Strain Fitness in Pseudomonas putida KT2440 around PP_5026

Experiment: Butyrolactam 2 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butyrolactam 2 vol%
5,726,020	-		PP_5025	0.63	-0.5
5,726,284	-		PP_5025	0.74	-1.1
5,726,284	-		PP_5025	0.74	-0.7
5,726,397	+		PP_5025	0.78	+0.4
5,726,476	-		PP_5025	0.81	+0.2
5,726,496	+		PP_5025	0.82	-0.4
5,726,497	-		PP_5025	0.82	-2.0
5,726,544	+		PP_5025	0.84	+0.7
5,726,856	-				+0.9
5,726,856	-				-0.9
5,726,856	-				+0.4
5,726,856	-				+0.1
5,726,912	+				+1.6
5,726,912	+				-0.5
5,726,913	-				+0.1
5,726,913	-				+1.4
5,726,913	-				+0.2
5,726,913	-				-0.0
5,726,913	-				+0.9
5,726,913	-				-2.3
5,726,913	-				-1.2
5,726,925	+				+1.6
5,726,926	-				-0.6
5,726,980	+				+0.1
5,726,980	+				-0.9
5,726,981	-				+1.4
5,726,981	-				-0.5
5,726,981	-				+0.8
5,727,260	+		PP_5026	0.18	+0.5
5,727,261	-		PP_5026	0.18	-0.2
5,727,262	+		PP_5026	0.18	+0.1
5,727,262	+		PP_5026	0.18	+0.3
5,727,263	-		PP_5026	0.18	+1.5
5,727,566	+		PP_5026	0.36	+1.5
5,727,566	+		PP_5026	0.36	+0.4
5,727,567	-		PP_5026	0.36	+0.2
5,727,667	+		PP_5026	0.42	-0.0
5,727,668	-		PP_5026	0.42	-1.0
5,727,668	-		PP_5026	0.42	-0.5
5,727,668	-		PP_5026	0.42	+0.3
5,727,853	+		PP_5026	0.53	-0.5
5,727,854	-		PP_5026	0.53	-1.6
5,727,892	+		PP_5026	0.56	+0.7
5,727,897	-		PP_5026	0.56	-1.4
5,728,001	-		PP_5026	0.62	+0.7
5,728,001	-		PP_5026	0.62	+1.1
5,728,036	+		PP_5026	0.64	-0.1
5,728,037	-		PP_5026	0.64	+0.7
5,728,037	-		PP_5026	0.64	-0.1
5,728,037	-		PP_5026	0.64	-1.2
5,728,156	+		PP_5026	0.71	+0.8
5,728,243	+		PP_5026	0.76	+0.1
5,728,264	+		PP_5026	0.78	-0.4
5,728,330	+		PP_5026	0.82	+0.4
5,728,330	+		PP_5026	0.82	-0.3
5,728,330	+		PP_5026	0.82	+0.3
5,728,405	+		PP_5026	0.86	-0.3
5,728,405	+		PP_5026	0.86	+0.4
5,728,406	-		PP_5026	0.86	-0.3
5,728,406	-		PP_5026	0.86	-1.1
5,728,650	+				+1.2
5,728,688	+				+0.2
5,728,787	-				-0.9
5,728,839	+				-1.0
5,728,839	+				-1.3
5,728,840	-				-0.1
5,728,840	-				-0.2
5,728,909	+				-0.3
5,728,909	+				+1.0
5,728,909	+				+0.1
5,728,910	-				+0.5
5,728,910	-				-0.3
5,728,910	-				+1.1
5,728,910	-				+0.4
5,728,910	-				+0.0
5,728,913	+				-0.0
5,728,918	+				+0.1
5,728,964	+				+0.1
5,728,965	-				-0.4
5,728,965	-				+1.5
5,728,975	+				+1.1
5,728,975	+				+0.5
5,729,039	+		PP_5027	0.18	+0.9
5,729,077	-		PP_5027	0.26	+0.2
5,729,177	+		PP_5027	0.49	+0.3
5,729,576	+		PP_5028	0.17	-0.3