Strain Fitness in Pseudomonas putida KT2440 around PP_2853

Experiment: Butyrolactam 2 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butyrolactam 2 vol%
3,254,890	+		PP_2852	0.61	+0.9
3,254,891	-		PP_2852	0.62	-0.8
3,254,926	+		PP_2852	0.63	-1.7
3,254,927	-		PP_2852	0.63	-1.8
3,255,051	-		PP_2852	0.69	-1.9
3,255,051	-		PP_2852	0.69	-1.7
3,255,051	-		PP_2852	0.69	-1.8
3,255,051	-		PP_2852	0.69	-1.1
3,255,229	+		PP_2852	0.77	+0.9
3,255,229	+		PP_2852	0.77	-0.6
3,255,230	-		PP_2852	0.77	+0.5
3,255,230	-		PP_2852	0.77	-0.2
3,255,258	+				-0.5
3,255,259	-		PP_2852	0.78	-1.4
3,255,259	-		PP_2852	0.78	-0.3
3,255,297	+		PP_2852	0.80	-0.8
3,255,463	+		PP_2852	0.88	-1.3
3,255,464	-		PP_2852	0.88	-0.6
3,255,467	+		PP_2852	0.88	-0.9
3,255,467	+				-1.2
3,255,467	+		PP_2852	0.88	-0.1
3,255,468	-		PP_2852	0.88	-0.8
3,255,468	-		PP_2852	0.88	-0.3
3,255,505	-		PP_2852	0.89	-0.8
3,255,591	+				-0.3
3,255,816	+				-0.0
3,255,816	+				+0.2
3,255,816	+				-0.1
3,255,817	-				+0.6
3,255,817	-				-0.5
3,255,817	-				+1.8
3,255,990	-				-1.7
3,256,009	+		PP_2853	0.11	-0.8
3,256,009	+		PP_2853	0.11	+0.7
3,256,010	-		PP_2853	0.11	-0.1
3,256,010	-		PP_2853	0.11	-0.3
3,256,225	+		PP_2853	0.27	-0.2
3,256,225	+		PP_2853	0.27	-0.3
3,256,225	+		PP_2853	0.27	-0.3
3,256,225	+		PP_2853	0.27	+0.7
3,256,226	-		PP_2853	0.28	+0.2
3,256,226	-		PP_2853	0.28	-1.3
3,256,226	-		PP_2853	0.28	+0.1
3,256,232	-		PP_2853	0.28	+0.3
3,256,232	-		PP_2853	0.28	-0.4
3,256,302	+		PP_2853	0.33	-0.6
3,256,302	+		PP_2853	0.33	+0.5
3,256,302	+		PP_2853	0.33	-0.8
3,256,302	+		PP_2853	0.33	-1.5
3,256,302	+		PP_2853	0.33	-0.2
3,256,302	+		PP_2853	0.33	-1.0
3,256,303	-		PP_2853	0.34	-1.0
3,256,303	-		PP_2853	0.34	+0.4
3,256,303	-		PP_2853	0.34	-1.6
3,256,303	-		PP_2853	0.34	+1.3
3,256,303	-		PP_2853	0.34	-0.4
3,256,378	+		PP_2853	0.39	-0.4
3,256,555	+		PP_2853	0.53	+0.1
3,256,555	+		PP_2853	0.53	-0.8
3,256,575	+		PP_2853	0.55	-0.5
3,256,616	+		PP_2853	0.58	-0.6
3,256,616	+		PP_2853	0.58	-1.3
3,256,618	+		PP_2853	0.58	+0.7
3,256,619	-		PP_2853	0.58	-0.9
3,256,619	-		PP_2853	0.58	+0.4
3,256,736	-		PP_2853	0.67	+0.2
3,256,736	-		PP_2853	0.67	+0.6
3,256,736	-		PP_2853	0.67	-1.2
3,256,744	+		PP_2853	0.68	-0.5
3,256,744	+		PP_2853	0.68	-0.8
3,256,744	+		PP_2853	0.68	-0.5
3,256,744	+		PP_2853	0.68	-0.7
3,256,744	+		PP_2853	0.68	-0.1
3,256,744	+		PP_2853	0.68	+0.0
3,256,744	+		PP_2853	0.68	-0.9
3,256,745	-		PP_2853	0.68	-1.3
3,256,745	-		PP_2853	0.68	+0.4
3,256,745	-		PP_2853	0.68	-0.0
3,256,745	-		PP_2853	0.68	-1.6
3,256,745	-		PP_2853	0.68	+0.1
3,256,804	+		PP_2853	0.73	-0.2
3,256,805	-		PP_2853	0.73	+0.7
3,257,024	-		PP_2853	0.90	-0.8
3,257,150	-				-0.9
3,257,175	+				-2.6
3,257,176	-				+3.6
3,257,176	-				+0.0
3,257,196	+				+0.0
3,257,488	+		PP_2854	0.38	+0.2
3,257,541	+		PP_2854	0.45	-1.3
3,257,556	-		PP_2854	0.47	-3.7
3,257,705	+		PP_2854	0.67	-1.2
3,257,705	+		PP_2854	0.67	-0.2
3,257,706	-				+1.4
3,257,706	-		PP_2854	0.67	-0.5
3,257,788	-		PP_2854	0.78	-0.5
3,257,788	-		PP_2854	0.78	-0.5
3,257,834	+		PP_2854	0.84	+0.7
3,257,953	-				-0.7
3,257,987	+				+0.7