Strain Fitness in Pseudomonas putida KT2440 around PP_2613

Experiment: Butyrolactam 2 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butyrolactam 2 vol%
2,988,392	+				+0.2
2,988,596	-		PP_2613	0.22	-0.2
2,988,596	-		PP_2613	0.22	-0.4
2,988,596	-		PP_2613	0.22	-0.1
2,988,602	-		PP_2613	0.22	-1.0
2,988,607	+		PP_2613	0.23	-0.0
2,988,607	+		PP_2613	0.23	+0.5
2,988,607	+		PP_2613	0.23	-1.0
2,988,607	+		PP_2613	0.23	-0.2
2,988,607	+		PP_2613	0.23	-0.8
2,988,608	-				-0.5
2,988,608	-		PP_2613	0.23	-0.2
2,988,621	+		PP_2613	0.24	-0.1
2,988,622	-		PP_2613	0.24	-0.3
2,988,622	-		PP_2613	0.24	+0.6
2,989,153	+		PP_2613	0.80	+0.0
2,989,153	+		PP_2613	0.80	-0.9
2,989,154	-		PP_2613	0.80	-1.2
2,989,155	+		PP_2613	0.80	-1.2
2,989,155	+		PP_2613	0.80	-0.7
2,989,178	+		PP_2613	0.83	+0.1
2,989,179	-				-0.5
2,989,571	-		PP_2614	0.12	+0.4
2,989,580	+		PP_2614	0.12	-0.6
2,989,580	+		PP_2614	0.12	+0.2
2,989,581	-		PP_2614	0.12	-0.3
2,989,653	-		PP_2614	0.16	-0.8
2,989,806	-		PP_2614	0.23	+0.5
2,989,874	+		PP_2614	0.26	-1.3
2,989,875	-		PP_2614	0.26	+0.1
2,990,032	+				+0.4
2,990,032	+		PP_2614	0.33	-0.4
2,990,056	+		PP_2614	0.34	+1.9
2,990,102	-		PP_2614	0.36	+0.1
2,990,102	-		PP_2614	0.36	-1.7
2,990,102	-		PP_2614	0.36	-1.2