Strain Fitness in Pseudomonas putida KT2440 around PP_1126

Experiment: Butyrolactam 2 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butyrolactam 2 vol%
1,288,485	-		PP_1125	0.87	+0.0
1,288,485	-		PP_1125	0.87	-0.7
1,288,485	-		PP_1125	0.87	-1.4
1,288,485	-		PP_1125	0.87	-0.0
1,288,672	+				+1.3
1,288,672	+				+0.5
1,288,720	+				+1.0
1,288,721	-				+1.6
1,288,797	-				-0.2
1,288,842	-				-0.3
1,288,980	+		PP_1126	0.11	-0.3
1,288,980	+		PP_1126	0.11	-2.8
1,289,442	+		PP_1126	0.30	+0.1
1,289,475	+		PP_1126	0.32	-0.7
1,289,475	+		PP_1126	0.32	-1.4
1,289,475	+		PP_1126	0.32	+0.1
1,289,475	+		PP_1126	0.32	-1.5
1,289,476	-		PP_1126	0.32	+0.4
1,289,476	-		PP_1126	0.32	-3.2
1,289,513	-		PP_1126	0.33	+0.5
1,289,608	+		PP_1126	0.37	+0.3
1,289,608	-		PP_1126	0.37	+0.0
1,289,608	-		PP_1126	0.37	-0.1
1,289,608	-		PP_1126	0.37	-2.2
1,289,683	-		PP_1126	0.41	+0.1
1,289,753	+		PP_1126	0.44	+0.2
1,289,753	+		PP_1126	0.44	-0.3
1,289,753	+		PP_1126	0.44	-0.4
1,289,753	+		PP_1126	0.44	-0.0
1,289,754	-		PP_1126	0.44	+0.6
1,289,757	+		PP_1126	0.44	+0.1
1,289,757	+		PP_1126	0.44	-0.7
1,289,758	-		PP_1126	0.44	-0.4
1,289,758	-		PP_1126	0.44	+0.9
1,289,758	-		PP_1126	0.44	-1.3
1,289,922	-		PP_1126	0.51	+0.3
1,289,925	+		PP_1126	0.51	-1.9
1,289,925	+		PP_1126	0.51	-1.1
1,289,926	-		PP_1126	0.51	-1.4
1,289,926	-		PP_1126	0.51	-1.3
1,290,096	+		PP_1126	0.58	-1.5
1,290,097	-		PP_1126	0.58	-1.0
1,290,097	-		PP_1126	0.58	-1.0
1,290,098	+		PP_1126	0.58	-1.3
1,290,098	+		PP_1126	0.58	-0.3
1,290,098	+		PP_1126	0.58	-1.3
1,290,099	-		PP_1126	0.58	-1.5
1,290,099	-		PP_1126	0.58	-0.5
1,290,099	-		PP_1126	0.58	-0.4
1,290,099	-		PP_1126	0.58	-1.8
1,290,099	-		PP_1126	0.58	+1.6
1,290,099	-		PP_1126	0.58	-0.4
1,290,099	-		PP_1126	0.58	-0.5
1,290,118	+		PP_1126	0.59	-1.5
1,290,523	-		PP_1126	0.76	-1.2
1,290,541	+		PP_1126	0.77	-0.6
1,290,555	+		PP_1126	0.78	-0.5
1,290,556	-		PP_1126	0.78	-1.4
1,290,632	+		PP_1126	0.81	-0.8
1,290,632	+		PP_1126	0.81	+0.9
1,290,632	+		PP_1126	0.81	-1.1
1,290,632	+		PP_1126	0.81	-0.6
1,290,633	-		PP_1126	0.81	-1.0
1,290,633	-		PP_1126	0.81	-0.7
1,290,673	+		PP_1126	0.83	-1.0
1,290,674	-		PP_1126	0.83	-1.2
1,290,674	-		PP_1126	0.83	-3.1
1,290,674	-		PP_1126	0.83	-3.7
1,290,690	+		PP_1126	0.84	+0.8
1,290,690	+		PP_1126	0.84	+1.0
1,290,691	-		PP_1126	0.84	-0.7
1,290,691	-		PP_1126	0.84	-1.0
1,290,691	-		PP_1126	0.84	-2.5
1,290,691	-		PP_1126	0.84	-0.1
1,290,692	+		PP_1126	0.84	-1.6
1,290,692	+		PP_1126	0.84	-2.5
1,290,693	-		PP_1126	0.84	-1.5
1,290,715	-		PP_1126	0.85	-0.8
1,290,846	+				-0.7
1,290,846	+				+0.3
1,290,847	-				-0.4
1,290,847	-				-1.5
1,290,910	-				-2.0
1,290,910	-				-2.3
1,290,983	+				+0.5
1,291,160	+				+1.6
1,291,160	+				-0.3
1,291,160	+				+0.0
1,291,161	-				-0.4
1,291,161	-				-1.7
1,291,161	-				-0.7
1,291,228	+				-0.5
1,291,228	+				-0.1
1,291,228	+				+0.7
1,291,229	-				-1.7
1,291,229	-				+0.6
1,291,229	-				+0.7
1,291,229	-				+0.0
1,291,229	-				-0.0
1,291,229	-				-1.5
1,291,389	+		PP_1127	0.16	-0.6
1,291,492	+		PP_1127	0.25	+1.2
1,291,493	-		PP_1127	0.25	-1.3
1,291,493	-		PP_1127	0.25	-0.1
1,291,493	-		PP_1127	0.25	-1.7
1,291,493	-		PP_1127	0.25	+0.5
1,291,493	-		PP_1127	0.25	-2.2
1,291,603	+		PP_1127	0.34	-0.3
1,291,603	+		PP_1127	0.34	+0.2
1,291,603	+		PP_1127	0.34	+0.6
1,291,603	+		PP_1127	0.34	-1.4
1,291,603	+		PP_1127	0.34	+0.1
1,291,603	+		PP_1127	0.34	+0.0
1,291,603	+		PP_1127	0.34	+0.6
1,291,603	+		PP_1127	0.34	-1.2
1,291,604	-		PP_1127	0.34	+1.6
1,291,604	-		PP_1127	0.34	-2.1
1,291,926	+		PP_1127	0.62	-2.1
1,291,926	+		PP_1127	0.62	-2.3
1,292,032	+		PP_1127	0.72	-0.5
1,292,032	+		PP_1127	0.72	-0.5
1,292,032	+		PP_1127	0.72	-0.2
1,292,032	+		PP_1127	0.72	-0.9
1,292,032	+		PP_1127	0.72	+1.3
1,292,033	-		PP_1127	0.72	+0.0
1,292,033	-		PP_1127	0.72	-0.1