Strain Fitness in Pseudomonas putida KT2440 around PP_0012

Experiment: Butyrolactam 2 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butyrolactam 2 vol%
12,211	+				-0.8
12,211	+				+0.0
12,236	+				-0.8
12,236	+				-1.0
12,236	+				-0.7
12,280	+				-0.4
12,280	+				-1.0
12,280	+				+0.1
12,281	-				-0.1
12,307	-				+1.4
12,401	+		PP_0012	0.16	-0.4
12,408	+		PP_0012	0.17	+0.5
12,425	+		PP_0012	0.18	+0.7
12,425	+		PP_0012	0.18	-1.2
12,425	+		PP_0012	0.18	+1.2
12,425	+		PP_0012	0.18	+1.6
12,425	+		PP_0012	0.18	-0.2
12,426	-		PP_0012	0.18	-0.2
12,426	-		PP_0012	0.18	-0.9
12,426	-		PP_0012	0.18	+0.7
12,426	-		PP_0012	0.18	+0.5
12,462	-		PP_0012	0.22	-0.7
12,503	+				-0.6
12,503	+		PP_0012	0.25	+1.6
12,503	+		PP_0012	0.25	+0.1
12,504	-		PP_0012	0.26	-0.1
12,504	-		PP_0012	0.26	-0.2
12,504	-		PP_0012	0.26	-0.1
12,504	-		PP_0012	0.26	-0.3
12,504	-		PP_0012	0.26	-0.8
12,504	-		PP_0012	0.26	-0.2
12,504	-		PP_0012	0.26	+0.0
12,504	-		PP_0012	0.26	-1.4
12,504	-		PP_0012	0.26	+0.1
12,504	-		PP_0012	0.26	-0.4
12,556	+		PP_0012	0.30	+0.4
12,556	+		PP_0012	0.30	-0.4
12,556	+		PP_0012	0.30	+0.5
12,728	+		PP_0012	0.46	-3.2
12,885	+		PP_0012	0.60	-0.9
12,965	+		PP_0012	0.67	-0.5
13,118	+		PP_0012	0.81	+0.4
13,118	+		PP_0012	0.81	-2.2
13,118	+		PP_0012	0.81	+0.5
13,118	+		PP_0012	0.81	+0.4
13,118	+		PP_0012	0.81	-1.0
13,118	+		PP_0012	0.81	+0.6
13,118	+		PP_0012	0.81	+0.9
13,122	+		PP_0012	0.82	+0.7
13,122	+		PP_0012	0.82	-1.0
13,122	+		PP_0012	0.82	+0.4
13,122	+		PP_0012	0.82	-1.3
13,222	+				-0.7
13,222	+				-0.5