Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1909

Experiment: m.b. pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1908 and B158DRAFT_1909 are separated by 36 nucleotidesB158DRAFT_1909 and B158DRAFT_1910 are separated by 43 nucleotides B158DRAFT_1908: B158DRAFT_1908 - Glycine/serine hydroxymethyltransferase, at 43,760 to 45,013 _1908 B158DRAFT_1909: B158DRAFT_1909 - transcriptional regulator NrdR, at 45,050 to 45,508 _1909 B158DRAFT_1910: B158DRAFT_1910 - diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26), at 45,552 to 46,670 _1910 Position (kb) 45 46Strain fitness (log2 ratio) -2 -1 0 1at 44.055 kb on - strand, within B158DRAFT_1908at 44.069 kb on + strand, within B158DRAFT_1908at 44.080 kb on - strand, within B158DRAFT_1908at 44.080 kb on - strand, within B158DRAFT_1908at 44.081 kb on + strand, within B158DRAFT_1908at 44.086 kb on + strand, within B158DRAFT_1908at 44.086 kb on + strand, within B158DRAFT_1908at 44.086 kb on + strand, within B158DRAFT_1908at 44.094 kb on - strand, within B158DRAFT_1908at 44.094 kb on - strand, within B158DRAFT_1908at 44.122 kb on + strand, within B158DRAFT_1908at 44.124 kb on - strand, within B158DRAFT_1908at 44.130 kb on - strand, within B158DRAFT_1908at 44.130 kb on - strand, within B158DRAFT_1908at 44.201 kb on + strand, within B158DRAFT_1908at 44.215 kb on + strand, within B158DRAFT_1908at 44.231 kb on + strand, within B158DRAFT_1908at 44.238 kb on + strand, within B158DRAFT_1908at 44.239 kb on - strand, within B158DRAFT_1908at 44.239 kb on - strand, within B158DRAFT_1908at 44.285 kb on + strand, within B158DRAFT_1908at 44.292 kb on + strand, within B158DRAFT_1908at 44.375 kb on + strand, within B158DRAFT_1908at 44.375 kb on + strand, within B158DRAFT_1908at 44.383 kb on - strand, within B158DRAFT_1908at 44.397 kb on + strand, within B158DRAFT_1908at 44.499 kb on - strand, within B158DRAFT_1908at 44.517 kb on - strand, within B158DRAFT_1908at 44.542 kb on - strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.626 kb on + strand, within B158DRAFT_1908at 44.773 kb on + strand, within B158DRAFT_1908at 44.781 kb on - strand, within B158DRAFT_1908at 44.791 kb on + strand, within B158DRAFT_1908at 44.799 kb on - strand, within B158DRAFT_1908at 44.845 kb on - strand, within B158DRAFT_1908at 44.851 kb on - strand, within B158DRAFT_1908at 44.885 kb on + strand, within B158DRAFT_1908at 45.047 kb on + strandat 45.047 kb on + strandat 45.202 kb on + strand, within B158DRAFT_1909at 45.288 kb on + strand, within B158DRAFT_1909at 45.339 kb on + strand, within B158DRAFT_1909at 45.339 kb on + strand, within B158DRAFT_1909at 45.402 kb on + strand, within B158DRAFT_1909

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. pH6
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44,055 - B158DRAFT_1908 0.24 -0.2
44,069 + B158DRAFT_1908 0.25 -1.0
44,080 - B158DRAFT_1908 0.26 -1.2
44,080 - B158DRAFT_1908 0.26 -0.9
44,081 + B158DRAFT_1908 0.26 -0.8
44,086 + B158DRAFT_1908 0.26 -0.8
44,086 + B158DRAFT_1908 0.26 -1.3
44,086 + B158DRAFT_1908 0.26 -0.0
44,094 - B158DRAFT_1908 0.27 -0.4
44,094 - B158DRAFT_1908 0.27 -0.4
44,122 + B158DRAFT_1908 0.29 -1.8
44,124 - B158DRAFT_1908 0.29 -0.6
44,130 - B158DRAFT_1908 0.30 -0.8
44,130 - B158DRAFT_1908 0.30 -1.1
44,201 + B158DRAFT_1908 0.35 -0.4
44,215 + B158DRAFT_1908 0.36 -1.2
44,231 + B158DRAFT_1908 0.38 -1.2
44,238 + B158DRAFT_1908 0.38 -1.6
44,239 - B158DRAFT_1908 0.38 -1.0
44,239 - B158DRAFT_1908 0.38 -1.5
44,285 + B158DRAFT_1908 0.42 -0.9
44,292 + B158DRAFT_1908 0.42 -1.0
44,375 + B158DRAFT_1908 0.49 -0.8
44,375 + B158DRAFT_1908 0.49 -1.2
44,383 - B158DRAFT_1908 0.50 -1.1
44,397 + B158DRAFT_1908 0.51 -0.9
44,499 - B158DRAFT_1908 0.59 -0.6
44,517 - B158DRAFT_1908 0.60 -1.1
44,542 - B158DRAFT_1908 0.62 -1.0
44,605 + B158DRAFT_1908 0.67 -0.9
44,605 + B158DRAFT_1908 0.67 -2.2
44,605 + B158DRAFT_1908 0.67 -1.5
44,605 + B158DRAFT_1908 0.67 -1.7
44,605 + B158DRAFT_1908 0.67 -0.8
44,605 + B158DRAFT_1908 0.67 -0.3
44,605 + B158DRAFT_1908 0.67 -1.0
44,605 + B158DRAFT_1908 0.67 -0.8
44,605 + B158DRAFT_1908 0.67 -1.4
44,605 + B158DRAFT_1908 0.67 +0.7
44,605 + B158DRAFT_1908 0.67 -0.7
44,605 + B158DRAFT_1908 0.67 -1.3
44,605 + B158DRAFT_1908 0.67 -0.2
44,613 - B158DRAFT_1908 0.68 -1.2
44,613 - B158DRAFT_1908 0.68 -1.1
44,613 - B158DRAFT_1908 0.68 -1.0
44,613 - B158DRAFT_1908 0.68 -1.2
44,613 - B158DRAFT_1908 0.68 -0.9
44,613 - B158DRAFT_1908 0.68 -1.9
44,613 - B158DRAFT_1908 0.68 -1.7
44,613 - B158DRAFT_1908 0.68 -1.3
44,613 - B158DRAFT_1908 0.68 -0.3
44,613 - B158DRAFT_1908 0.68 -1.9
44,626 + B158DRAFT_1908 0.69 -0.8
44,773 + B158DRAFT_1908 0.81 -0.6
44,781 - B158DRAFT_1908 0.81 -0.6
44,791 + B158DRAFT_1908 0.82 -0.9
44,799 - B158DRAFT_1908 0.83 -0.8
44,845 - B158DRAFT_1908 0.87 -2.7
44,851 - B158DRAFT_1908 0.87 -1.3
44,885 + B158DRAFT_1908 0.90 -0.8
45,047 + +0.0
45,047 + -0.5
45,202 + B158DRAFT_1909 0.33 -1.0
45,288 + B158DRAFT_1909 0.52 -0.7
45,339 + B158DRAFT_1909 0.63 -0.8
45,339 + B158DRAFT_1909 0.63 -1.0
45,402 + B158DRAFT_1909 0.77 -1.7

Or see this region's nucleotide sequence