Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0886

Experiment: m.b. pH6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_0885 and B158DRAFT_0886 are separated by 288 nucleotidesB158DRAFT_0886 and B158DRAFT_0887 are separated by 54 nucleotidesB158DRAFT_0887 and B158DRAFT_0888 are separated by 61 nucleotides B158DRAFT_0885: B158DRAFT_0885 - excinuclease ABC, A subunit, at 902,777 to 905,602 _0885 B158DRAFT_0886: B158DRAFT_0886 - Arabinose efflux permease, at 905,891 to 907,255 _0886 B158DRAFT_0887: B158DRAFT_0887 - single-strand binding protein, at 907,310 to 907,771 _0887 B158DRAFT_0888: B158DRAFT_0888 - Integral membrane protein, interacts with FtsH, at 907,833 to 908,537 _0888 Position (kb) 905 906 907 908Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 904.935 kb on + strand, within B158DRAFT_0885at 904.943 kb on - strand, within B158DRAFT_0885at 904.977 kb on + strand, within B158DRAFT_0885at 904.999 kb on + strand, within B158DRAFT_0885at 904.999 kb on + strand, within B158DRAFT_0885at 905.007 kb on - strand, within B158DRAFT_0885at 905.007 kb on - strand, within B158DRAFT_0885at 905.061 kb on + strand, within B158DRAFT_0885at 905.086 kb on - strand, within B158DRAFT_0885at 905.086 kb on - strand, within B158DRAFT_0885at 905.117 kb on + strand, within B158DRAFT_0885at 905.124 kb on + strand, within B158DRAFT_0885at 905.124 kb on + strand, within B158DRAFT_0885at 905.132 kb on - strand, within B158DRAFT_0885at 905.132 kb on - strand, within B158DRAFT_0885at 905.161 kb on + strand, within B158DRAFT_0885at 905.161 kb on + strand, within B158DRAFT_0885at 905.161 kb on + strand, within B158DRAFT_0885at 905.161 kb on - strand, within B158DRAFT_0885at 905.169 kb on + strand, within B158DRAFT_0885at 905.169 kb on - strand, within B158DRAFT_0885at 905.169 kb on - strand, within B158DRAFT_0885at 905.169 kb on - strand, within B158DRAFT_0885at 905.169 kb on - strand, within B158DRAFT_0885at 905.169 kb on - strand, within B158DRAFT_0885at 905.169 kb on - strand, within B158DRAFT_0885at 905.177 kb on - strand, within B158DRAFT_0885at 905.205 kb on - strand, within B158DRAFT_0885at 905.205 kb on - strand, within B158DRAFT_0885at 905.217 kb on + strand, within B158DRAFT_0885at 905.248 kb on - strand, within B158DRAFT_0885at 905.253 kb on + strand, within B158DRAFT_0885at 905.256 kb on - strand, within B158DRAFT_0885at 905.264 kb on + strand, within B158DRAFT_0885at 905.304 kb on - strand, within B158DRAFT_0885at 905.370 kb on + strandat 905.370 kb on + strandat 905.370 kb on + strandat 905.378 kb on - strandat 905.378 kb on - strandat 905.378 kb on - strandat 905.471 kb on - strandat 905.489 kb on + strandat 905.497 kb on - strandat 905.570 kb on + strandat 905.595 kb on - strandat 905.609 kb on + strandat 905.619 kb on + strandat 905.645 kb on - strandat 905.684 kb on + strandat 905.689 kb on - strandat 905.729 kb on - strandat 905.729 kb on - strandat 905.731 kb on - strandat 905.731 kb on - strandat 905.782 kb on + strandat 905.803 kb on + strandat 905.803 kb on + strandat 905.803 kb on + strandat 905.811 kb on - strandat 905.818 kb on + strandat 905.819 kb on - strandat 905.864 kb on + strandat 905.872 kb on - strandat 906.011 kb on + strandat 906.011 kb on + strandat 906.011 kb on + strandat 906.011 kb on + strandat 906.011 kb on + strandat 906.019 kb on - strandat 906.095 kb on + strand, within B158DRAFT_0886at 906.125 kb on + strand, within B158DRAFT_0886at 906.213 kb on + strand, within B158DRAFT_0886at 906.256 kb on - strand, within B158DRAFT_0886at 906.266 kb on + strand, within B158DRAFT_0886at 906.266 kb on + strand, within B158DRAFT_0886at 906.266 kb on + strand, within B158DRAFT_0886at 906.274 kb on - strand, within B158DRAFT_0886at 906.336 kb on - strand, within B158DRAFT_0886at 906.349 kb on + strand, within B158DRAFT_0886at 906.504 kb on + strand, within B158DRAFT_0886at 906.583 kb on + strand, within B158DRAFT_0886at 906.618 kb on + strand, within B158DRAFT_0886at 906.674 kb on + strand, within B158DRAFT_0886at 906.764 kb on + strand, within B158DRAFT_0886at 906.764 kb on + strand, within B158DRAFT_0886at 906.772 kb on - strand, within B158DRAFT_0886at 906.800 kb on - strand, within B158DRAFT_0886at 906.867 kb on - strand, within B158DRAFT_0886at 906.867 kb on - strand, within B158DRAFT_0886at 906.869 kb on - strand, within B158DRAFT_0886at 906.880 kb on + strand, within B158DRAFT_0886at 906.885 kb on + strand, within B158DRAFT_0886at 906.885 kb on + strand, within B158DRAFT_0886at 906.887 kb on + strand, within B158DRAFT_0886at 906.887 kb on + strand, within B158DRAFT_0886at 906.893 kb on - strand, within B158DRAFT_0886at 906.893 kb on - strand, within B158DRAFT_0886at 906.893 kb on - strand, within B158DRAFT_0886at 906.893 kb on - strand, within B158DRAFT_0886at 906.895 kb on - strand, within B158DRAFT_0886at 906.895 kb on - strand, within B158DRAFT_0886at 906.913 kb on - strand, within B158DRAFT_0886at 906.913 kb on - strand, within B158DRAFT_0886at 906.924 kb on - strand, within B158DRAFT_0886at 906.998 kb on - strand, within B158DRAFT_0886at 907.042 kb on - strand, within B158DRAFT_0886at 907.048 kb on - strand, within B158DRAFT_0886at 907.048 kb on - strand, within B158DRAFT_0886at 907.093 kb on + strand, within B158DRAFT_0886at 907.130 kb on + strandat 907.765 kb on + strandat 907.805 kb on + strandat 907.849 kb on + strandat 907.875 kb on + strandat 907.949 kb on + strand, within B158DRAFT_0888at 907.957 kb on - strand, within B158DRAFT_0888at 907.957 kb on - strand, within B158DRAFT_0888at 907.962 kb on - strand, within B158DRAFT_0888at 908.009 kb on + strand, within B158DRAFT_0888at 908.152 kb on + strand, within B158DRAFT_0888at 908.199 kb on - strand, within B158DRAFT_0888at 908.243 kb on - strand, within B158DRAFT_0888

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. pH6
remove
904,935 + B158DRAFT_0885 0.76 -0.0
904,943 - B158DRAFT_0885 0.77 -0.2
904,977 + B158DRAFT_0885 0.78 -0.4
904,999 + B158DRAFT_0885 0.79 -0.1
904,999 + B158DRAFT_0885 0.79 +0.5
905,007 - B158DRAFT_0885 0.79 -0.6
905,007 - B158DRAFT_0885 0.79 +0.2
905,061 + B158DRAFT_0885 0.81 -0.0
905,086 - B158DRAFT_0885 0.82 -0.3
905,086 - B158DRAFT_0885 0.82 -0.4
905,117 + B158DRAFT_0885 0.83 +0.0
905,124 + B158DRAFT_0885 0.83 -0.1
905,124 + B158DRAFT_0885 0.83 +0.1
905,132 - B158DRAFT_0885 0.83 -0.2
905,132 - B158DRAFT_0885 0.83 -0.3
905,161 + B158DRAFT_0885 0.84 +0.1
905,161 + B158DRAFT_0885 0.84 -0.4
905,161 + B158DRAFT_0885 0.84 +0.2
905,161 - B158DRAFT_0885 0.84 -0.1
905,169 + B158DRAFT_0885 0.85 +0.2
905,169 - B158DRAFT_0885 0.85 -0.5
905,169 - B158DRAFT_0885 0.85 -0.1
905,169 - B158DRAFT_0885 0.85 +0.2
905,169 - B158DRAFT_0885 0.85 -0.6
905,169 - B158DRAFT_0885 0.85 +0.3
905,169 - B158DRAFT_0885 0.85 +0.4
905,177 - B158DRAFT_0885 0.85 +0.2
905,205 - B158DRAFT_0885 0.86 -0.3
905,205 - B158DRAFT_0885 0.86 +0.6
905,217 + B158DRAFT_0885 0.86 -0.6
905,248 - B158DRAFT_0885 0.87 -0.4
905,253 + B158DRAFT_0885 0.88 -0.1
905,256 - B158DRAFT_0885 0.88 -0.3
905,264 + B158DRAFT_0885 0.88 -0.4
905,304 - B158DRAFT_0885 0.89 +0.7
905,370 + +0.0
905,370 + +0.2
905,370 + -0.4
905,378 - +0.1
905,378 - +0.0
905,378 - -0.0
905,471 - -0.3
905,489 + -1.3
905,497 - +0.1
905,570 + -0.9
905,595 - -0.1
905,609 + -0.4
905,619 + +0.4
905,645 - +0.1
905,684 + -0.1
905,689 - +0.0
905,729 - +0.2
905,729 - -0.1
905,731 - +0.0
905,731 - +0.2
905,782 + +2.3
905,803 + -0.2
905,803 + -0.3
905,803 + +0.1
905,811 - -1.1
905,818 + -0.6
905,819 - -0.9
905,864 + +0.0
905,872 - -0.6
906,011 + -2.4
906,011 + +0.1
906,011 + -0.7
906,011 + -1.0
906,011 + -1.6
906,019 - -2.7
906,095 + B158DRAFT_0886 0.15 +0.1
906,125 + B158DRAFT_0886 0.17 -2.3
906,213 + B158DRAFT_0886 0.24 -1.9
906,256 - B158DRAFT_0886 0.27 -2.1
906,266 + B158DRAFT_0886 0.27 -2.5
906,266 + B158DRAFT_0886 0.27 -0.0
906,266 + B158DRAFT_0886 0.27 -0.7
906,274 - B158DRAFT_0886 0.28 -1.5
906,336 - B158DRAFT_0886 0.33 -1.5
906,349 + B158DRAFT_0886 0.34 -1.6
906,504 + B158DRAFT_0886 0.45 +0.5
906,583 + B158DRAFT_0886 0.51 -1.9
906,618 + B158DRAFT_0886 0.53 -2.2
906,674 + B158DRAFT_0886 0.57 -1.2
906,764 + B158DRAFT_0886 0.64 -1.5
906,764 + B158DRAFT_0886 0.64 -0.7
906,772 - B158DRAFT_0886 0.65 -2.0
906,800 - B158DRAFT_0886 0.67 -0.4
906,867 - B158DRAFT_0886 0.72 -1.3
906,867 - B158DRAFT_0886 0.72 -0.9
906,869 - B158DRAFT_0886 0.72 -2.3
906,880 + B158DRAFT_0886 0.72 -2.1
906,885 + B158DRAFT_0886 0.73 -2.2
906,885 + B158DRAFT_0886 0.73 -1.8
906,887 + B158DRAFT_0886 0.73 -0.2
906,887 + B158DRAFT_0886 0.73 -1.9
906,893 - B158DRAFT_0886 0.73 -0.7
906,893 - B158DRAFT_0886 0.73 -1.7
906,893 - B158DRAFT_0886 0.73 -2.0
906,893 - B158DRAFT_0886 0.73 -0.5
906,895 - B158DRAFT_0886 0.74 +0.2
906,895 - B158DRAFT_0886 0.74 +0.2
906,913 - B158DRAFT_0886 0.75 -2.5
906,913 - B158DRAFT_0886 0.75 -0.5
906,924 - B158DRAFT_0886 0.76 -0.4
906,998 - B158DRAFT_0886 0.81 -4.1
907,042 - B158DRAFT_0886 0.84 +0.2
907,048 - B158DRAFT_0886 0.85 -0.3
907,048 - B158DRAFT_0886 0.85 -0.2
907,093 + B158DRAFT_0886 0.88 -0.6
907,130 + -1.2
907,765 + +0.2
907,805 + -0.1
907,849 + -0.3
907,875 + +0.0
907,949 + B158DRAFT_0888 0.16 -0.0
907,957 - B158DRAFT_0888 0.18 -0.2
907,957 - B158DRAFT_0888 0.18 -0.7
907,962 - B158DRAFT_0888 0.18 -0.2
908,009 + B158DRAFT_0888 0.25 -0.1
908,152 + B158DRAFT_0888 0.45 -0.0
908,199 - B158DRAFT_0888 0.52 +0.3
908,243 - B158DRAFT_0888 0.58 +0.0

Or see this region's nucleotide sequence