Experiment: Nicotinamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3768 and Atu3769 are separated by 149 nucleotides Atu3769 and Atu3770 are separated by 215 nucleotides Atu3770 and Atu3771 are separated by 350 nucleotides
Atu3768: Atu3768 - homospermidine synthase, at 850,303 to 851,748
Atu3768
Atu3769: Atu3769 - outer membrane lipoprotein, at 851,898 to 852,272
Atu3769
Atu3770: Atu3770 - 5'-nucleotidase, at 852,488 to 854,398
Atu3770
Atu3771: Atu3771 - ferrochelatase, at 854,749 to 855,783
Atu3771
Position (kb) 852
853
854
855 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 851.527 kb on + strand, within Atu3768 at 851.527 kb on + strand, within Atu3768 at 851.535 kb on - strand, within Atu3768 at 851.549 kb on - strand, within Atu3768 at 851.553 kb on + strand, within Atu3768 at 851.559 kb on + strand, within Atu3768 at 851.584 kb on + strand, within Atu3768 at 851.622 kb on + strand at 851.622 kb on + strand at 851.646 kb on + strand at 851.654 kb on - strand at 851.654 kb on - strand at 851.673 kb on - strand at 851.678 kb on + strand at 851.686 kb on - strand at 851.709 kb on + strand at 851.717 kb on - strand at 851.770 kb on - strand at 851.880 kb on + strand at 852.248 kb on + strand at 852.322 kb on - strand at 852.391 kb on + strand at 852.470 kb on + strand at 852.475 kb on + strand at 852.483 kb on - strand at 852.519 kb on + strand at 852.576 kb on - strand at 852.675 kb on - strand at 852.718 kb on + strand, within Atu3770 at 852.781 kb on + strand, within Atu3770 at 852.799 kb on - strand, within Atu3770 at 852.828 kb on + strand, within Atu3770 at 852.908 kb on + strand, within Atu3770 at 852.976 kb on + strand, within Atu3770 at 853.059 kb on - strand, within Atu3770 at 853.070 kb on - strand, within Atu3770 at 853.153 kb on + strand, within Atu3770 at 853.155 kb on + strand, within Atu3770 at 853.243 kb on + strand, within Atu3770 at 853.243 kb on + strand, within Atu3770 at 853.248 kb on + strand, within Atu3770 at 853.251 kb on - strand, within Atu3770 at 853.251 kb on - strand, within Atu3770 at 853.251 kb on - strand, within Atu3770 at 853.261 kb on - strand, within Atu3770 at 853.275 kb on + strand, within Atu3770 at 853.354 kb on + strand, within Atu3770 at 853.354 kb on + strand, within Atu3770 at 853.362 kb on - strand, within Atu3770 at 853.404 kb on + strand, within Atu3770 at 853.465 kb on + strand, within Atu3770 at 853.517 kb on - strand, within Atu3770 at 853.525 kb on - strand, within Atu3770 at 853.533 kb on + strand, within Atu3770 at 853.606 kb on + strand, within Atu3770 at 853.614 kb on - strand, within Atu3770 at 853.690 kb on + strand, within Atu3770 at 853.695 kb on + strand, within Atu3770 at 853.703 kb on - strand, within Atu3770 at 853.705 kb on - strand, within Atu3770 at 853.740 kb on - strand, within Atu3770 at 853.740 kb on - strand, within Atu3770 at 853.838 kb on - strand, within Atu3770 at 853.875 kb on + strand, within Atu3770 at 853.918 kb on + strand, within Atu3770 at 853.918 kb on + strand, within Atu3770 at 853.926 kb on - strand, within Atu3770 at 853.926 kb on - strand, within Atu3770 at 853.958 kb on + strand, within Atu3770 at 853.965 kb on + strand, within Atu3770 at 853.973 kb on - strand, within Atu3770 at 854.036 kb on + strand, within Atu3770 at 854.044 kb on - strand, within Atu3770 at 854.073 kb on - strand, within Atu3770 at 854.128 kb on + strand, within Atu3770 at 854.134 kb on + strand, within Atu3770 at 854.230 kb on - strand at 854.340 kb on + strand at 854.342 kb on - strand at 854.490 kb on + strand at 854.623 kb on - strand at 854.630 kb on + strand at 854.684 kb on + strand at 854.684 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nicotinamide (N) remove 851,527 + Atu3768 0.85 -0.1 851,527 + Atu3768 0.85 +1.0 851,535 - Atu3768 0.85 +0.4 851,549 - Atu3768 0.86 -0.2 851,553 + Atu3768 0.86 +0.7 851,559 + Atu3768 0.87 +0.2 851,584 + Atu3768 0.89 +0.9 851,622 + -1.0 851,622 + -0.1 851,646 + -0.3 851,654 - +0.9 851,654 - -0.5 851,673 - +0.1 851,678 + +0.4 851,686 - -0.0 851,709 + +0.0 851,717 - -0.5 851,770 - +0.0 851,880 + +0.2 852,248 + -0.8 852,322 - +0.1 852,391 + -0.5 852,470 + +0.1 852,475 + -0.0 852,483 - +0.1 852,519 + +0.2 852,576 - +0.6 852,675 - +0.5 852,718 + Atu3770 0.12 +0.1 852,781 + Atu3770 0.15 -0.2 852,799 - Atu3770 0.16 +0.1 852,828 + Atu3770 0.18 -0.2 852,908 + Atu3770 0.22 +1.1 852,976 + Atu3770 0.26 +0.4 853,059 - Atu3770 0.30 -0.3 853,070 - Atu3770 0.30 -0.2 853,153 + Atu3770 0.35 -0.2 853,155 + Atu3770 0.35 +0.4 853,243 + Atu3770 0.40 +0.2 853,243 + Atu3770 0.40 -0.6 853,248 + Atu3770 0.40 -0.2 853,251 - Atu3770 0.40 -0.3 853,251 - Atu3770 0.40 +0.0 853,251 - Atu3770 0.40 +0.1 853,261 - Atu3770 0.40 +0.5 853,275 + Atu3770 0.41 -0.0 853,354 + Atu3770 0.45 -0.1 853,354 + Atu3770 0.45 +0.1 853,362 - Atu3770 0.46 -0.1 853,404 + Atu3770 0.48 -0.3 853,465 + Atu3770 0.51 -0.1 853,517 - Atu3770 0.54 +0.4 853,525 - Atu3770 0.54 +0.6 853,533 + Atu3770 0.55 -0.8 853,606 + Atu3770 0.59 +1.5 853,614 - Atu3770 0.59 +0.1 853,690 + Atu3770 0.63 +0.3 853,695 + Atu3770 0.63 +0.0 853,703 - Atu3770 0.64 -0.0 853,705 - Atu3770 0.64 +0.3 853,740 - Atu3770 0.66 -3.1 853,740 - Atu3770 0.66 -0.1 853,838 - Atu3770 0.71 -2.4 853,875 + Atu3770 0.73 +0.3 853,918 + Atu3770 0.75 +0.3 853,918 + Atu3770 0.75 +0.7 853,926 - Atu3770 0.75 -1.1 853,926 - Atu3770 0.75 +0.8 853,958 + Atu3770 0.77 +0.2 853,965 + Atu3770 0.77 +0.0 853,973 - Atu3770 0.78 -0.2 854,036 + Atu3770 0.81 -0.1 854,044 - Atu3770 0.81 +0.5 854,073 - Atu3770 0.83 +0.3 854,128 + Atu3770 0.86 -0.5 854,134 + Atu3770 0.86 +0.0 854,230 - -0.9 854,340 + +0.7 854,342 - -0.6 854,490 + -0.2 854,623 - +0.4 854,630 + +0.5 854,684 + -0.0 854,684 + +1.8
Or see this region's nucleotide sequence