Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_84

Experiment: D-Serine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_83 and PfGW456L13_84 overlap by 4 nucleotidesPfGW456L13_84 and PfGW456L13_85 are separated by 134 nucleotidesPfGW456L13_85 and PfGW456L13_86 are separated by 161 nucleotides PfGW456L13_83 - Urea ABC transporter, permease protein UrtC, at 95,393 to 96,472 _83 PfGW456L13_84 - Urea ABC transporter, ATPase protein UrtD, at 96,469 to 97,341 _84 PfGW456L13_85 - Urea ABC transporter, ATPase protein UrtE, at 97,476 to 98,174 _85 PfGW456L13_86 - Urease accessory protein UreD, at 98,336 to 99,175 _86 Position (kb) 96 97 98Strain fitness (log2 ratio) -2 -1 0 1 2at 95.476 kb on - strandat 95.476 kb on - strandat 95.476 kb on - strandat 95.537 kb on + strand, within PfGW456L13_83at 95.538 kb on - strand, within PfGW456L13_83at 95.538 kb on - strand, within PfGW456L13_83at 95.538 kb on - strand, within PfGW456L13_83at 95.539 kb on + strand, within PfGW456L13_83at 95.540 kb on - strand, within PfGW456L13_83at 95.540 kb on - strand, within PfGW456L13_83at 95.540 kb on - strand, within PfGW456L13_83at 95.570 kb on + strand, within PfGW456L13_83at 95.571 kb on - strand, within PfGW456L13_83at 95.660 kb on + strand, within PfGW456L13_83at 95.675 kb on + strand, within PfGW456L13_83at 95.675 kb on + strand, within PfGW456L13_83at 95.675 kb on + strand, within PfGW456L13_83at 95.675 kb on + strand, within PfGW456L13_83at 95.675 kb on + strand, within PfGW456L13_83at 95.675 kb on + strand, within PfGW456L13_83at 95.675 kb on + strand, within PfGW456L13_83at 95.675 kb on + strand, within PfGW456L13_83at 95.675 kb on + strand, within PfGW456L13_83at 95.676 kb on - strand, within PfGW456L13_83at 95.676 kb on - strand, within PfGW456L13_83at 95.676 kb on - strandat 95.676 kb on - strand, within PfGW456L13_83at 95.864 kb on + strand, within PfGW456L13_83at 95.865 kb on - strand, within PfGW456L13_83at 96.209 kb on + strand, within PfGW456L13_83at 96.209 kb on + strand, within PfGW456L13_83at 96.209 kb on + strand, within PfGW456L13_83at 96.210 kb on - strand, within PfGW456L13_83at 96.210 kb on - strand, within PfGW456L13_83at 96.210 kb on - strand, within PfGW456L13_83at 96.262 kb on + strand, within PfGW456L13_83at 96.378 kb on - strandat 96.378 kb on - strandat 96.422 kb on + strandat 96.423 kb on - strandat 96.423 kb on - strandat 96.679 kb on + strand, within PfGW456L13_84at 96.679 kb on + strand, within PfGW456L13_84at 96.680 kb on - strand, within PfGW456L13_84at 96.680 kb on - strand, within PfGW456L13_84at 96.680 kb on - strand, within PfGW456L13_84at 96.992 kb on + strand, within PfGW456L13_84at 96.992 kb on + strand, within PfGW456L13_84at 96.992 kb on + strand, within PfGW456L13_84at 97.327 kb on + strandat 97.327 kb on + strandat 97.327 kb on + strandat 97.327 kb on + strandat 97.328 kb on - strandat 97.328 kb on - strandat 97.328 kb on - strandat 97.328 kb on - strandat 97.328 kb on - strandat 97.328 kb on - strandat 97.328 kb on - strandat 97.328 kb on - strandat 97.355 kb on + strandat 97.356 kb on - strandat 97.356 kb on - strandat 97.356 kb on - strandat 97.356 kb on - strandat 97.356 kb on - strandat 97.394 kb on + strandat 97.394 kb on + strandat 97.394 kb on + strandat 97.394 kb on + strandat 97.395 kb on - strandat 97.411 kb on - strandat 97.411 kb on - strandat 97.503 kb on + strandat 97.504 kb on - strandat 97.504 kb on - strandat 97.504 kb on - strandat 97.504 kb on - strandat 97.506 kb on + strandat 97.507 kb on - strandat 97.713 kb on + strand, within PfGW456L13_85at 97.713 kb on + strand, within PfGW456L13_85at 97.713 kb on + strand, within PfGW456L13_85at 97.714 kb on - strand, within PfGW456L13_85at 97.714 kb on - strand, within PfGW456L13_85at 97.714 kb on - strand, within PfGW456L13_85at 97.714 kb on - strand, within PfGW456L13_85at 97.714 kb on - strand, within PfGW456L13_85at 97.714 kb on - strand, within PfGW456L13_85at 97.714 kb on - strand, within PfGW456L13_85at 97.824 kb on + strand, within PfGW456L13_85at 97.824 kb on + strand, within PfGW456L13_85at 98.000 kb on - strand, within PfGW456L13_85at 98.055 kb on + strand, within PfGW456L13_85at 98.056 kb on - strand, within PfGW456L13_85at 98.056 kb on - strand, within PfGW456L13_85at 98.056 kb on - strand, within PfGW456L13_85at 98.085 kb on + strand, within PfGW456L13_85at 98.085 kb on + strand, within PfGW456L13_85at 98.085 kb on + strand, within PfGW456L13_85at 98.135 kb on + strandat 98.136 kb on - strandat 98.136 kb on - strandat 98.136 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
remove
95,476 - +1.0
95,476 - +0.7
95,476 - -0.2
95,537 + PfGW456L13_83 0.13 -0.1
95,538 - PfGW456L13_83 0.13 +1.4
95,538 - PfGW456L13_83 0.13 +1.6
95,538 - PfGW456L13_83 0.13 -2.0
95,539 + PfGW456L13_83 0.14 +0.1
95,540 - PfGW456L13_83 0.14 -0.1
95,540 - PfGW456L13_83 0.14 +0.5
95,540 - PfGW456L13_83 0.14 +0.2
95,570 + PfGW456L13_83 0.16 -1.7
95,571 - PfGW456L13_83 0.16 -1.5
95,660 + PfGW456L13_83 0.25 +0.0
95,675 + PfGW456L13_83 0.26 -0.3
95,675 + PfGW456L13_83 0.26 -1.1
95,675 + PfGW456L13_83 0.26 -0.9
95,675 + PfGW456L13_83 0.26 +0.4
95,675 + PfGW456L13_83 0.26 -0.5
95,675 + PfGW456L13_83 0.26 -2.6
95,675 + PfGW456L13_83 0.26 +0.6
95,675 + PfGW456L13_83 0.26 -2.3
95,675 + PfGW456L13_83 0.26 -0.3
95,676 - PfGW456L13_83 0.26 -0.2
95,676 - PfGW456L13_83 0.26 +0.3
95,676 - +1.1
95,676 - PfGW456L13_83 0.26 +0.2
95,864 + PfGW456L13_83 0.44 -0.2
95,865 - PfGW456L13_83 0.44 -1.3
96,209 + PfGW456L13_83 0.76 -2.4
96,209 + PfGW456L13_83 0.76 -0.7
96,209 + PfGW456L13_83 0.76 +0.1
96,210 - PfGW456L13_83 0.76 +0.1
96,210 - PfGW456L13_83 0.76 +0.5
96,210 - PfGW456L13_83 0.76 -0.0
96,262 + PfGW456L13_83 0.80 -1.0
96,378 - -0.6
96,378 - +0.4
96,422 + -2.7
96,423 - +0.1
96,423 - -0.1
96,679 + PfGW456L13_84 0.24 +1.4
96,679 + PfGW456L13_84 0.24 -0.0
96,680 - PfGW456L13_84 0.24 +0.2
96,680 - PfGW456L13_84 0.24 +0.3
96,680 - PfGW456L13_84 0.24 -0.4
96,992 + PfGW456L13_84 0.60 +1.1
96,992 + PfGW456L13_84 0.60 +1.4
96,992 + PfGW456L13_84 0.60 +1.3
97,327 + +0.6
97,327 + -2.4
97,327 + -1.2
97,327 + -0.8
97,328 - +0.6
97,328 - -0.0
97,328 - +0.6
97,328 - -2.3
97,328 - -0.3
97,328 - -0.3
97,328 - +0.7
97,328 - -1.3
97,355 + +0.8
97,356 - -1.3
97,356 - -2.3
97,356 - +0.3
97,356 - +0.6
97,356 - -0.9
97,394 + -0.3
97,394 + -0.3
97,394 + +1.2
97,394 + +1.3
97,395 - +0.7
97,411 - -0.1
97,411 - +2.2
97,503 + +0.6
97,504 - -1.3
97,504 - -0.5
97,504 - +0.8
97,504 - +0.2
97,506 + +0.8
97,507 - +0.7
97,713 + PfGW456L13_85 0.34 +1.3
97,713 + PfGW456L13_85 0.34 -0.4
97,713 + PfGW456L13_85 0.34 -1.3
97,714 - PfGW456L13_85 0.34 +1.2
97,714 - PfGW456L13_85 0.34 +0.6
97,714 - PfGW456L13_85 0.34 -1.0
97,714 - PfGW456L13_85 0.34 +0.2
97,714 - PfGW456L13_85 0.34 +0.5
97,714 - PfGW456L13_85 0.34 +0.9
97,714 - PfGW456L13_85 0.34 -1.2
97,824 + PfGW456L13_85 0.50 -0.9
97,824 + PfGW456L13_85 0.50 +0.3
98,000 - PfGW456L13_85 0.75 -0.3
98,055 + PfGW456L13_85 0.83 -1.2
98,056 - PfGW456L13_85 0.83 +0.8
98,056 - PfGW456L13_85 0.83 +0.3
98,056 - PfGW456L13_85 0.83 -0.0
98,085 + PfGW456L13_85 0.87 +0.7
98,085 + PfGW456L13_85 0.87 +0.6
98,085 + PfGW456L13_85 0.87 -0.6
98,135 + +0.3
98,136 - -0.6
98,136 - +0.5
98,136 - -0.6

Or see this region's nucleotide sequence