Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_813

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_812 and PfGW456L13_813 overlap by 29 nucleotidesPfGW456L13_813 and PfGW456L13_814 are separated by 99 nucleotides PfGW456L13_812 - D-amino acid dehydrogenase small subunit (EC 1.4.99.1), at 910,358 to 911,668 _812 PfGW456L13_813 - Translation initiation inhibitor, at 911,640 to 911,993 _813 PfGW456L13_814 - Alanine racemase (EC 5.1.1.1), at 912,093 to 913,166 _814 Position (kb) 911 912Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 910.771 kb on + strand, within PfGW456L13_812at 910.876 kb on + strand, within PfGW456L13_812at 911.129 kb on + strand, within PfGW456L13_812at 911.175 kb on - strand, within PfGW456L13_812at 911.256 kb on - strand, within PfGW456L13_812at 911.599 kb on + strandat 911.599 kb on + strandat 911.599 kb on + strandat 911.600 kb on - strandat 911.706 kb on + strand, within PfGW456L13_813at 911.838 kb on + strand, within PfGW456L13_813at 911.838 kb on + strand, within PfGW456L13_813at 911.991 kb on + strandat 911.991 kb on + strandat 911.991 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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910,771 + PfGW456L13_812 0.32 +3.3
910,876 + PfGW456L13_812 0.40 +2.3
911,129 + PfGW456L13_812 0.59 +2.7
911,175 - PfGW456L13_812 0.62 +3.8
911,256 - PfGW456L13_812 0.68 +1.7
911,599 + +1.5
911,599 + -0.2
911,599 + -0.6
911,600 - +3.1
911,706 + PfGW456L13_813 0.19 +0.5
911,838 + PfGW456L13_813 0.56 +0.6
911,838 + PfGW456L13_813 0.56 -1.2
911,991 + -2.6
911,991 + +0.1
911,991 + -0.6

Or see this region's nucleotide sequence