Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_728

Experiment: D-Serine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_727 and PfGW456L13_728 are separated by 205 nucleotidesPfGW456L13_728 and PfGW456L13_729 are separated by 11 nucleotides PfGW456L13_727 - LysR family transcriptional regulator PA5437, at 825,944 to 826,891 _727 PfGW456L13_728 - Pyruvate carboxyl transferase subunit A (EC 6.4.1.1), at 827,097 to 828,512 _728 PfGW456L13_729 - Pyruvate carboxyl transferase subunit B (EC 6.4.1.1), at 828,524 to 830,332 _729 Position (kb) 827 828 829Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 826.196 kb on + strand, within PfGW456L13_727at 826.196 kb on + strand, within PfGW456L13_727at 826.196 kb on + strand, within PfGW456L13_727at 826.197 kb on - strand, within PfGW456L13_727at 826.197 kb on - strand, within PfGW456L13_727at 826.197 kb on - strand, within PfGW456L13_727at 826.269 kb on + strand, within PfGW456L13_727at 826.269 kb on + strand, within PfGW456L13_727at 826.269 kb on + strand, within PfGW456L13_727at 826.269 kb on + strand, within PfGW456L13_727at 826.269 kb on + strand, within PfGW456L13_727at 826.270 kb on - strand, within PfGW456L13_727at 826.323 kb on + strand, within PfGW456L13_727at 826.324 kb on - strand, within PfGW456L13_727at 826.324 kb on - strand, within PfGW456L13_727at 826.324 kb on - strand, within PfGW456L13_727at 826.694 kb on + strand, within PfGW456L13_727at 826.719 kb on + strand, within PfGW456L13_727at 826.720 kb on - strand, within PfGW456L13_727at 826.720 kb on - strand, within PfGW456L13_727at 826.737 kb on + strand, within PfGW456L13_727at 826.737 kb on + strand, within PfGW456L13_727at 826.738 kb on - strand, within PfGW456L13_727at 826.738 kb on - strand, within PfGW456L13_727at 826.833 kb on + strandat 826.833 kb on + strandat 826.833 kb on + strandat 826.833 kb on + strandat 826.833 kb on + strandat 826.833 kb on + strandat 826.834 kb on - strandat 826.946 kb on - strandat 827.006 kb on - strandat 827.057 kb on + strandat 827.057 kb on + strandat 827.058 kb on - strandat 827.058 kb on - strandat 827.058 kb on - strandat 827.058 kb on - strandat 827.149 kb on + strandat 827.150 kb on - strandat 827.150 kb on - strandat 827.150 kb on - strandat 827.191 kb on - strandat 827.476 kb on + strand, within PfGW456L13_728at 827.699 kb on + strand, within PfGW456L13_728at 827.699 kb on + strand, within PfGW456L13_728at 827.699 kb on + strand, within PfGW456L13_728at 827.699 kb on + strand, within PfGW456L13_728at 827.700 kb on - strand, within PfGW456L13_728at 827.700 kb on - strand, within PfGW456L13_728at 827.700 kb on - strand, within PfGW456L13_728at 827.853 kb on + strand, within PfGW456L13_728at 827.853 kb on + strand, within PfGW456L13_728at 827.853 kb on + strand, within PfGW456L13_728at 827.853 kb on + strand, within PfGW456L13_728at 827.853 kb on + strand, within PfGW456L13_728at 827.854 kb on - strand, within PfGW456L13_728at 827.854 kb on - strand, within PfGW456L13_728at 827.854 kb on - strand, within PfGW456L13_728at 827.854 kb on - strand, within PfGW456L13_728at 827.854 kb on - strand, within PfGW456L13_728at 827.854 kb on - strand, within PfGW456L13_728at 827.854 kb on - strand, within PfGW456L13_728at 827.895 kb on + strand, within PfGW456L13_728at 827.943 kb on + strand, within PfGW456L13_728at 827.943 kb on + strand, within PfGW456L13_728at 827.943 kb on + strand, within PfGW456L13_728at 827.943 kb on + strand, within PfGW456L13_728at 827.943 kb on + strand, within PfGW456L13_728at 827.943 kb on + strand, within PfGW456L13_728at 827.943 kb on + strand, within PfGW456L13_728at 827.943 kb on + strand, within PfGW456L13_728at 827.944 kb on - strand, within PfGW456L13_728at 827.944 kb on - strand, within PfGW456L13_728at 827.944 kb on - strand, within PfGW456L13_728at 827.944 kb on - strand, within PfGW456L13_728at 827.944 kb on - strand, within PfGW456L13_728at 828.165 kb on + strand, within PfGW456L13_728at 828.165 kb on + strand, within PfGW456L13_728at 828.165 kb on + strand, within PfGW456L13_728at 828.166 kb on - strand, within PfGW456L13_728at 828.166 kb on - strand, within PfGW456L13_728at 828.166 kb on - strand, within PfGW456L13_728at 828.166 kb on - strand, within PfGW456L13_728at 828.166 kb on - strand, within PfGW456L13_728at 828.207 kb on + strand, within PfGW456L13_728at 828.207 kb on + strand, within PfGW456L13_728at 828.208 kb on - strand, within PfGW456L13_728at 828.208 kb on - strand, within PfGW456L13_728at 828.208 kb on - strand, within PfGW456L13_728at 828.208 kb on - strand, within PfGW456L13_728at 828.208 kb on - strand, within PfGW456L13_728at 828.235 kb on - strand, within PfGW456L13_728at 828.235 kb on - strand, within PfGW456L13_728at 828.351 kb on + strand, within PfGW456L13_728at 828.352 kb on - strand, within PfGW456L13_728at 828.354 kb on + strand, within PfGW456L13_728at 828.355 kb on - strand, within PfGW456L13_728at 828.355 kb on - strand, within PfGW456L13_728at 828.355 kb on - strand, within PfGW456L13_728at 828.355 kb on - strand, within PfGW456L13_728at 828.438 kb on + strandat 828.438 kb on + strandat 828.438 kb on + strandat 828.438 kb on + strandat 828.438 kb on + strandat 828.517 kb on + strandat 828.517 kb on + strandat 828.517 kb on + strandat 828.517 kb on + strandat 828.517 kb on + strandat 828.517 kb on + strandat 828.517 kb on + strandat 828.518 kb on - strandat 828.518 kb on - strandat 828.518 kb on - strandat 828.518 kb on - strandat 828.554 kb on - strandat 828.554 kb on - strandat 828.554 kb on - strandat 828.645 kb on - strandat 828.690 kb on + strandat 828.690 kb on + strandat 828.690 kb on + strandat 828.690 kb on + strandat 828.690 kb on + strandat 828.691 kb on - strandat 828.748 kb on + strand, within PfGW456L13_729at 828.895 kb on + strand, within PfGW456L13_729at 828.895 kb on + strand, within PfGW456L13_729at 828.959 kb on + strand, within PfGW456L13_729at 828.959 kb on + strand, within PfGW456L13_729at 829.331 kb on + strand, within PfGW456L13_729at 829.331 kb on + strand, within PfGW456L13_729at 829.331 kb on + strand, within PfGW456L13_729at 829.331 kb on + strand, within PfGW456L13_729at 829.331 kb on + strand, within PfGW456L13_729at 829.331 kb on + strand, within PfGW456L13_729at 829.332 kb on - strand, within PfGW456L13_729at 829.332 kb on - strand, within PfGW456L13_729at 829.332 kb on - strand, within PfGW456L13_729at 829.332 kb on - strand, within PfGW456L13_729at 829.337 kb on + strand, within PfGW456L13_729at 829.337 kb on + strand, within PfGW456L13_729at 829.337 kb on + strand, within PfGW456L13_729at 829.338 kb on - strand, within PfGW456L13_729at 829.338 kb on - strand, within PfGW456L13_729at 829.338 kb on - strand, within PfGW456L13_729at 829.355 kb on + strand, within PfGW456L13_729at 829.355 kb on + strand, within PfGW456L13_729at 829.355 kb on + strand, within PfGW456L13_729at 829.355 kb on + strand, within PfGW456L13_729at 829.356 kb on - strand, within PfGW456L13_729at 829.356 kb on - strand, within PfGW456L13_729at 829.356 kb on - strand, within PfGW456L13_729

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
remove
826,196 + PfGW456L13_727 0.27 -3.2
826,196 + PfGW456L13_727 0.27 -2.5
826,196 + PfGW456L13_727 0.27 -4.0
826,197 - PfGW456L13_727 0.27 -3.5
826,197 - PfGW456L13_727 0.27 -4.6
826,197 - PfGW456L13_727 0.27 -2.1
826,269 + PfGW456L13_727 0.34 -3.2
826,269 + PfGW456L13_727 0.34 -3.5
826,269 + PfGW456L13_727 0.34 -0.1
826,269 + PfGW456L13_727 0.34 -2.9
826,269 + PfGW456L13_727 0.34 +2.3
826,270 - PfGW456L13_727 0.34 -4.0
826,323 + PfGW456L13_727 0.40 -2.5
826,324 - PfGW456L13_727 0.40 -4.1
826,324 - PfGW456L13_727 0.40 -3.6
826,324 - PfGW456L13_727 0.40 -2.4
826,694 + PfGW456L13_727 0.79 -0.9
826,719 + PfGW456L13_727 0.82 -2.3
826,720 - PfGW456L13_727 0.82 -3.0
826,720 - PfGW456L13_727 0.82 -2.7
826,737 + PfGW456L13_727 0.84 -3.4
826,737 + PfGW456L13_727 0.84 -3.7
826,738 - PfGW456L13_727 0.84 -4.0
826,738 - PfGW456L13_727 0.84 -2.4
826,833 + -4.6
826,833 + -1.9
826,833 + -4.3
826,833 + -2.5
826,833 + -3.2
826,833 + -2.8
826,834 - -3.6
826,946 - -1.9
827,006 - -3.6
827,057 + -1.6
827,057 + -2.7
827,058 - -1.4
827,058 - -2.1
827,058 - -1.0
827,058 - -2.6
827,149 + -4.3
827,150 - -3.8
827,150 - -4.2
827,150 - -2.4
827,191 - -1.2
827,476 + PfGW456L13_728 0.27 -1.3
827,699 + PfGW456L13_728 0.43 -2.1
827,699 + PfGW456L13_728 0.43 -3.4
827,699 + PfGW456L13_728 0.43 -4.8
827,699 + PfGW456L13_728 0.43 -2.3
827,700 - PfGW456L13_728 0.43 -3.1
827,700 - PfGW456L13_728 0.43 -3.4
827,700 - PfGW456L13_728 0.43 -3.4
827,853 + PfGW456L13_728 0.53 -2.7
827,853 + PfGW456L13_728 0.53 -2.1
827,853 + PfGW456L13_728 0.53 -3.0
827,853 + PfGW456L13_728 0.53 -0.9
827,853 + PfGW456L13_728 0.53 -4.0
827,854 - PfGW456L13_728 0.53 -2.4
827,854 - PfGW456L13_728 0.53 -3.2
827,854 - PfGW456L13_728 0.53 -0.7
827,854 - PfGW456L13_728 0.53 -2.9
827,854 - PfGW456L13_728 0.53 -1.9
827,854 - PfGW456L13_728 0.53 -3.7
827,854 - PfGW456L13_728 0.53 -2.1
827,895 + PfGW456L13_728 0.56 -1.4
827,943 + PfGW456L13_728 0.60 -3.2
827,943 + PfGW456L13_728 0.60 -2.8
827,943 + PfGW456L13_728 0.60 -0.3
827,943 + PfGW456L13_728 0.60 -4.2
827,943 + PfGW456L13_728 0.60 -3.6
827,943 + PfGW456L13_728 0.60 -2.5
827,943 + PfGW456L13_728 0.60 -2.2
827,943 + PfGW456L13_728 0.60 -3.8
827,944 - PfGW456L13_728 0.60 -2.7
827,944 - PfGW456L13_728 0.60 -2.2
827,944 - PfGW456L13_728 0.60 -3.9
827,944 - PfGW456L13_728 0.60 -2.6
827,944 - PfGW456L13_728 0.60 -4.4
828,165 + PfGW456L13_728 0.75 -3.7
828,165 + PfGW456L13_728 0.75 -1.6
828,165 + PfGW456L13_728 0.75 -2.9
828,166 - PfGW456L13_728 0.75 +0.7
828,166 - PfGW456L13_728 0.75 -2.8
828,166 - PfGW456L13_728 0.75 -3.1
828,166 - PfGW456L13_728 0.75 -1.4
828,166 - PfGW456L13_728 0.75 -2.5
828,207 + PfGW456L13_728 0.78 -4.4
828,207 + PfGW456L13_728 0.78 -2.1
828,208 - PfGW456L13_728 0.78 -2.1
828,208 - PfGW456L13_728 0.78 -2.3
828,208 - PfGW456L13_728 0.78 -0.9
828,208 - PfGW456L13_728 0.78 -2.0
828,208 - PfGW456L13_728 0.78 -2.0
828,235 - PfGW456L13_728 0.80 -3.0
828,235 - PfGW456L13_728 0.80 -3.3
828,351 + PfGW456L13_728 0.89 -3.4
828,352 - PfGW456L13_728 0.89 -3.2
828,354 + PfGW456L13_728 0.89 -2.8
828,355 - PfGW456L13_728 0.89 -3.3
828,355 - PfGW456L13_728 0.89 -2.6
828,355 - PfGW456L13_728 0.89 -3.2
828,355 - PfGW456L13_728 0.89 -2.7
828,438 + -1.1
828,438 + -2.6
828,438 + -2.5
828,438 + -2.7
828,438 + -2.0
828,517 + -1.4
828,517 + -2.4
828,517 + -1.9
828,517 + -4.3
828,517 + -4.5
828,517 + -1.7
828,517 + -4.0
828,518 - -4.1
828,518 - -2.6
828,518 - -3.9
828,518 - -2.6
828,554 - -2.9
828,554 - -2.2
828,554 - -2.0
828,645 - -2.1
828,690 + -2.1
828,690 + -1.4
828,690 + -2.4
828,690 + -1.6
828,690 + -3.0
828,691 - -3.4
828,748 + PfGW456L13_729 0.12 -3.2
828,895 + PfGW456L13_729 0.21 -4.1
828,895 + PfGW456L13_729 0.21 -0.7
828,959 + PfGW456L13_729 0.24 -2.3
828,959 + PfGW456L13_729 0.24 +0.5
829,331 + PfGW456L13_729 0.45 -2.9
829,331 + PfGW456L13_729 0.45 -2.1
829,331 + PfGW456L13_729 0.45 -3.1
829,331 + PfGW456L13_729 0.45 -2.7
829,331 + PfGW456L13_729 0.45 -1.9
829,331 + PfGW456L13_729 0.45 -1.9
829,332 - PfGW456L13_729 0.45 -2.1
829,332 - PfGW456L13_729 0.45 -3.1
829,332 - PfGW456L13_729 0.45 -1.6
829,332 - PfGW456L13_729 0.45 -2.4
829,337 + PfGW456L13_729 0.45 -1.3
829,337 + PfGW456L13_729 0.45 -2.9
829,337 + PfGW456L13_729 0.45 -0.0
829,338 - PfGW456L13_729 0.45 -0.1
829,338 - PfGW456L13_729 0.45 -1.7
829,338 - PfGW456L13_729 0.45 -3.7
829,355 + PfGW456L13_729 0.46 -0.9
829,355 + PfGW456L13_729 0.46 -2.7
829,355 + PfGW456L13_729 0.46 -3.0
829,355 + PfGW456L13_729 0.46 -3.7
829,356 - PfGW456L13_729 0.46 -3.4
829,356 - PfGW456L13_729 0.46 -3.2
829,356 - PfGW456L13_729 0.46 -2.9

Or see this region's nucleotide sequence