Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_707

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_706 and PfGW456L13_707 are separated by 194 nucleotidesPfGW456L13_707 and PfGW456L13_708 overlap by 4 nucleotidesPfGW456L13_708 and PfGW456L13_709 are separated by 11 nucleotides PfGW456L13_706 - Threonyl-tRNA synthetase (EC 6.1.1.3), at 804,729 to 805,616 _706 PfGW456L13_707 - Carbonic anhydrase, gamma class (EC 4.2.1.1), at 805,811 to 806,371 _707 PfGW456L13_708 - Zinc ABC transporter, periplasmic-binding protein ZnuA, at 806,368 to 807,243 _708 PfGW456L13_709 - Zinc ABC transporter, inner membrane permease protein ZnuB, at 807,255 to 808,121 _709 Position (kb) 805 806 807Strain fitness (log2 ratio) -3 -2 -1 0 1at 804.898 kb on + strand, within PfGW456L13_706at 804.976 kb on + strand, within PfGW456L13_706at 804.976 kb on + strand, within PfGW456L13_706at 804.976 kb on + strand, within PfGW456L13_706at 804.976 kb on + strand, within PfGW456L13_706at 804.976 kb on + strand, within PfGW456L13_706at 804.976 kb on + strand, within PfGW456L13_706at 804.976 kb on + strand, within PfGW456L13_706at 804.976 kb on + strand, within PfGW456L13_706at 804.977 kb on - strand, within PfGW456L13_706at 804.977 kb on - strand, within PfGW456L13_706at 804.977 kb on - strand, within PfGW456L13_706at 804.977 kb on - strand, within PfGW456L13_706at 804.977 kb on - strand, within PfGW456L13_706at 804.977 kb on - strand, within PfGW456L13_706at 804.977 kb on - strand, within PfGW456L13_706at 804.977 kb on - strand, within PfGW456L13_706at 805.069 kb on + strand, within PfGW456L13_706at 805.070 kb on - strand, within PfGW456L13_706at 805.070 kb on - strand, within PfGW456L13_706at 805.160 kb on - strand, within PfGW456L13_706at 805.160 kb on - strand, within PfGW456L13_706at 805.160 kb on - strand, within PfGW456L13_706at 805.180 kb on + strand, within PfGW456L13_706at 805.180 kb on + strand, within PfGW456L13_706at 805.260 kb on + strand, within PfGW456L13_706at 805.260 kb on + strand, within PfGW456L13_706at 805.309 kb on + strand, within PfGW456L13_706at 805.310 kb on - strand, within PfGW456L13_706at 805.310 kb on - strand, within PfGW456L13_706at 805.310 kb on - strand, within PfGW456L13_706at 805.471 kb on + strand, within PfGW456L13_706at 805.471 kb on + strand, within PfGW456L13_706at 805.489 kb on - strand, within PfGW456L13_706at 805.576 kb on + strandat 805.577 kb on - strandat 805.625 kb on + strandat 805.626 kb on - strandat 805.626 kb on - strandat 805.626 kb on - strandat 805.640 kb on - strandat 805.640 kb on - strandat 805.650 kb on - strandat 805.677 kb on + strandat 805.678 kb on - strandat 805.802 kb on + strandat 805.802 kb on + strandat 805.803 kb on - strandat 805.803 kb on - strandat 805.803 kb on - strandat 805.803 kb on - strandat 805.837 kb on - strandat 805.955 kb on + strand, within PfGW456L13_707at 805.956 kb on - strand, within PfGW456L13_707at 805.956 kb on - strand, within PfGW456L13_707at 805.959 kb on + strand, within PfGW456L13_707at 805.959 kb on + strand, within PfGW456L13_707at 805.959 kb on + strand, within PfGW456L13_707at 805.959 kb on + strand, within PfGW456L13_707at 805.960 kb on - strand, within PfGW456L13_707at 805.960 kb on - strand, within PfGW456L13_707at 805.960 kb on - strand, within PfGW456L13_707at 805.960 kb on - strand, within PfGW456L13_707at 805.960 kb on - strand, within PfGW456L13_707at 806.243 kb on + strand, within PfGW456L13_707at 806.243 kb on + strand, within PfGW456L13_707at 806.244 kb on - strand, within PfGW456L13_707at 806.244 kb on - strand, within PfGW456L13_707at 806.244 kb on - strand, within PfGW456L13_707at 806.244 kb on - strand, within PfGW456L13_707at 806.244 kb on - strand, within PfGW456L13_707at 806.244 kb on - strand, within PfGW456L13_707at 806.244 kb on - strand, within PfGW456L13_707at 806.244 kb on - strand, within PfGW456L13_707at 806.319 kb on + strandat 806.319 kb on + strandat 806.320 kb on - strandat 806.390 kb on + strandat 806.390 kb on + strandat 806.390 kb on + strandat 806.390 kb on + strandat 806.391 kb on - strandat 806.391 kb on - strandat 806.391 kb on - strandat 806.391 kb on - strandat 806.391 kb on - strandat 806.391 kb on - strandat 806.391 kb on - strandat 806.465 kb on + strand, within PfGW456L13_708at 806.465 kb on + strand, within PfGW456L13_708at 806.466 kb on - strand, within PfGW456L13_708at 806.555 kb on - strand, within PfGW456L13_708at 806.655 kb on - strand, within PfGW456L13_708at 806.669 kb on + strand, within PfGW456L13_708at 806.756 kb on + strand, within PfGW456L13_708at 806.756 kb on + strand, within PfGW456L13_708at 806.757 kb on - strand, within PfGW456L13_708at 806.771 kb on + strand, within PfGW456L13_708at 806.771 kb on + strand, within PfGW456L13_708at 806.772 kb on - strand, within PfGW456L13_708at 806.772 kb on - strand, within PfGW456L13_708at 806.772 kb on - strand, within PfGW456L13_708at 806.792 kb on + strand, within PfGW456L13_708at 806.793 kb on - strand, within PfGW456L13_708at 806.849 kb on + strand, within PfGW456L13_708at 806.849 kb on + strand, within PfGW456L13_708at 806.849 kb on + strand, within PfGW456L13_708at 806.849 kb on + strand, within PfGW456L13_708at 806.849 kb on + strand, within PfGW456L13_708at 806.849 kb on + strand, within PfGW456L13_708at 806.850 kb on - strand, within PfGW456L13_708at 806.850 kb on - strand, within PfGW456L13_708at 806.850 kb on - strand, within PfGW456L13_708at 806.850 kb on - strand, within PfGW456L13_708at 806.850 kb on - strand, within PfGW456L13_708at 806.850 kb on - strand, within PfGW456L13_708at 806.850 kb on - strand, within PfGW456L13_708at 806.871 kb on + strand, within PfGW456L13_708at 806.872 kb on - strand, within PfGW456L13_708at 806.926 kb on + strand, within PfGW456L13_708at 806.926 kb on + strand, within PfGW456L13_708at 807.071 kb on + strand, within PfGW456L13_708at 807.071 kb on + strand, within PfGW456L13_708at 807.072 kb on - strand, within PfGW456L13_708at 807.072 kb on - strand, within PfGW456L13_708at 807.072 kb on - strand, within PfGW456L13_708at 807.232 kb on + strandat 807.232 kb on + strandat 807.232 kb on + strandat 807.233 kb on - strandat 807.233 kb on - strandat 807.289 kb on - strandat 807.326 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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804,898 + PfGW456L13_706 0.19 -0.8
804,976 + PfGW456L13_706 0.28 -0.1
804,976 + PfGW456L13_706 0.28 +0.0
804,976 + PfGW456L13_706 0.28 -2.2
804,976 + PfGW456L13_706 0.28 +0.7
804,976 + PfGW456L13_706 0.28 -0.6
804,976 + PfGW456L13_706 0.28 -0.1
804,976 + PfGW456L13_706 0.28 -0.5
804,976 + PfGW456L13_706 0.28 +0.5
804,977 - PfGW456L13_706 0.28 +0.2
804,977 - PfGW456L13_706 0.28 +1.1
804,977 - PfGW456L13_706 0.28 +0.3
804,977 - PfGW456L13_706 0.28 -1.1
804,977 - PfGW456L13_706 0.28 -0.8
804,977 - PfGW456L13_706 0.28 +1.2
804,977 - PfGW456L13_706 0.28 +0.4
804,977 - PfGW456L13_706 0.28 -0.5
805,069 + PfGW456L13_706 0.38 -0.7
805,070 - PfGW456L13_706 0.38 -0.1
805,070 - PfGW456L13_706 0.38 +0.1
805,160 - PfGW456L13_706 0.49 -1.4
805,160 - PfGW456L13_706 0.49 -3.2
805,160 - PfGW456L13_706 0.49 -1.4
805,180 + PfGW456L13_706 0.51 -0.9
805,180 + PfGW456L13_706 0.51 -1.0
805,260 + PfGW456L13_706 0.60 +0.3
805,260 + PfGW456L13_706 0.60 +0.7
805,309 + PfGW456L13_706 0.65 -0.3
805,310 - PfGW456L13_706 0.65 -0.1
805,310 - PfGW456L13_706 0.65 +0.2
805,310 - PfGW456L13_706 0.65 -0.0
805,471 + PfGW456L13_706 0.84 +0.3
805,471 + PfGW456L13_706 0.84 -0.3
805,489 - PfGW456L13_706 0.86 +1.2
805,576 + -1.4
805,577 - -0.8
805,625 + -0.6
805,626 - -0.3
805,626 - -0.1
805,626 - -0.6
805,640 - +0.8
805,640 - -1.3
805,650 - +0.4
805,677 + +0.2
805,678 - -0.5
805,802 + +1.3
805,802 + -0.9
805,803 - +1.5
805,803 - +0.8
805,803 - +0.6
805,803 - -0.4
805,837 - +0.6
805,955 + PfGW456L13_707 0.26 -1.2
805,956 - PfGW456L13_707 0.26 +0.8
805,956 - PfGW456L13_707 0.26 +1.4
805,959 + PfGW456L13_707 0.26 -0.9
805,959 + PfGW456L13_707 0.26 -0.1
805,959 + PfGW456L13_707 0.26 -0.2
805,959 + PfGW456L13_707 0.26 -0.9
805,960 - PfGW456L13_707 0.27 +0.6
805,960 - PfGW456L13_707 0.27 -0.4
805,960 - PfGW456L13_707 0.27 +1.1
805,960 - PfGW456L13_707 0.27 +0.5
805,960 - PfGW456L13_707 0.27 -0.5
806,243 + PfGW456L13_707 0.77 +1.3
806,243 + PfGW456L13_707 0.77 +1.0
806,244 - PfGW456L13_707 0.77 +0.9
806,244 - PfGW456L13_707 0.77 +0.9
806,244 - PfGW456L13_707 0.77 +0.3
806,244 - PfGW456L13_707 0.77 +0.6
806,244 - PfGW456L13_707 0.77 +0.2
806,244 - PfGW456L13_707 0.77 -1.0
806,244 - PfGW456L13_707 0.77 -1.2
806,244 - PfGW456L13_707 0.77 +0.0
806,319 + -2.5
806,319 + +0.1
806,320 - +1.0
806,390 + -0.5
806,390 + -3.0
806,390 + +1.2
806,390 + +0.5
806,391 - +0.6
806,391 - +1.1
806,391 - -0.3
806,391 - -1.7
806,391 - -0.1
806,391 - +0.5
806,391 - +0.8
806,465 + PfGW456L13_708 0.11 +0.3
806,465 + PfGW456L13_708 0.11 +0.7
806,466 - PfGW456L13_708 0.11 +0.3
806,555 - PfGW456L13_708 0.21 -2.9
806,655 - PfGW456L13_708 0.33 -0.3
806,669 + PfGW456L13_708 0.34 +0.3
806,756 + PfGW456L13_708 0.44 +0.5
806,756 + PfGW456L13_708 0.44 -0.9
806,757 - PfGW456L13_708 0.44 +0.3
806,771 + PfGW456L13_708 0.46 +0.6
806,771 + PfGW456L13_708 0.46 -0.0
806,772 - PfGW456L13_708 0.46 +0.1
806,772 - PfGW456L13_708 0.46 -0.5
806,772 - PfGW456L13_708 0.46 +0.5
806,792 + PfGW456L13_708 0.48 -1.2
806,793 - PfGW456L13_708 0.49 +0.1
806,849 + PfGW456L13_708 0.55 -0.7
806,849 + PfGW456L13_708 0.55 +0.6
806,849 + PfGW456L13_708 0.55 +0.2
806,849 + PfGW456L13_708 0.55 +0.6
806,849 + PfGW456L13_708 0.55 +0.6
806,849 + PfGW456L13_708 0.55 +1.4
806,850 - PfGW456L13_708 0.55 +0.5
806,850 - PfGW456L13_708 0.55 -0.0
806,850 - PfGW456L13_708 0.55 -0.3
806,850 - PfGW456L13_708 0.55 +1.4
806,850 - PfGW456L13_708 0.55 -0.2
806,850 - PfGW456L13_708 0.55 +1.6
806,850 - PfGW456L13_708 0.55 -0.6
806,871 + PfGW456L13_708 0.57 -0.6
806,872 - PfGW456L13_708 0.58 +1.1
806,926 + PfGW456L13_708 0.64 -0.5
806,926 + PfGW456L13_708 0.64 -0.3
807,071 + PfGW456L13_708 0.80 -0.6
807,071 + PfGW456L13_708 0.80 +0.1
807,072 - PfGW456L13_708 0.80 -0.2
807,072 - PfGW456L13_708 0.80 -1.7
807,072 - PfGW456L13_708 0.80 +0.4
807,232 + -0.5
807,232 + +0.7
807,232 + -0.3
807,233 - -0.8
807,233 - +0.1
807,289 - -0.7
807,326 - +0.9

Or see this region's nucleotide sequence