Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_619

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_618 and PfGW456L13_619 are separated by 91 nucleotidesPfGW456L13_619 and PfGW456L13_620 are separated by 244 nucleotides PfGW456L13_618 - Sulfate transporter family protein in cluster with carbonic anhydrase, at 708,052 to 709,578 _618 PfGW456L13_619 - Carbonic anhydrase (EC 4.2.1.1), at 709,670 to 710,401 _619 PfGW456L13_620 - Radical SAM domain protein, at 710,646 to 711,704 _620 Position (kb) 709 710 711Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 708.730 kb on - strand, within PfGW456L13_618at 708.780 kb on + strand, within PfGW456L13_618at 708.780 kb on + strand, within PfGW456L13_618at 708.780 kb on + strand, within PfGW456L13_618at 708.780 kb on + strand, within PfGW456L13_618at 708.780 kb on + strand, within PfGW456L13_618at 708.781 kb on - strand, within PfGW456L13_618at 708.781 kb on - strand, within PfGW456L13_618at 708.781 kb on - strand, within PfGW456L13_618at 708.781 kb on - strand, within PfGW456L13_618at 708.781 kb on - strand, within PfGW456L13_618at 708.781 kb on - strand, within PfGW456L13_618at 708.781 kb on - strand, within PfGW456L13_618at 708.991 kb on + strand, within PfGW456L13_618at 708.991 kb on + strand, within PfGW456L13_618at 708.992 kb on - strand, within PfGW456L13_618at 709.033 kb on - strand, within PfGW456L13_618at 709.202 kb on - strand, within PfGW456L13_618at 709.226 kb on + strand, within PfGW456L13_618at 709.227 kb on - strand, within PfGW456L13_618at 709.313 kb on - strand, within PfGW456L13_618at 709.662 kb on - strandat 709.671 kb on + strandat 709.671 kb on + strandat 709.672 kb on - strandat 709.672 kb on - strandat 709.672 kb on - strandat 709.672 kb on - strandat 709.749 kb on + strand, within PfGW456L13_619at 709.749 kb on + strand, within PfGW456L13_619at 709.749 kb on + strand, within PfGW456L13_619at 709.779 kb on + strand, within PfGW456L13_619at 709.780 kb on - strand, within PfGW456L13_619at 709.780 kb on - strand, within PfGW456L13_619at 709.795 kb on + strand, within PfGW456L13_619at 709.795 kb on + strand, within PfGW456L13_619at 709.795 kb on + strand, within PfGW456L13_619at 709.795 kb on + strand, within PfGW456L13_619at 709.795 kb on + strand, within PfGW456L13_619at 709.795 kb on + strand, within PfGW456L13_619at 709.796 kb on - strand, within PfGW456L13_619at 709.796 kb on - strand, within PfGW456L13_619at 709.799 kb on + strand, within PfGW456L13_619at 709.799 kb on + strand, within PfGW456L13_619at 709.799 kb on + strand, within PfGW456L13_619at 709.799 kb on + strand, within PfGW456L13_619at 709.799 kb on + strand, within PfGW456L13_619at 709.800 kb on - strand, within PfGW456L13_619at 709.800 kb on - strand, within PfGW456L13_619at 709.800 kb on - strand, within PfGW456L13_619at 709.800 kb on - strand, within PfGW456L13_619at 709.800 kb on - strand, within PfGW456L13_619at 709.800 kb on - strand, within PfGW456L13_619at 710.079 kb on + strand, within PfGW456L13_619at 710.143 kb on + strand, within PfGW456L13_619at 710.317 kb on + strand, within PfGW456L13_619at 710.318 kb on - strand, within PfGW456L13_619at 710.318 kb on - strand, within PfGW456L13_619at 710.318 kb on - strand, within PfGW456L13_619at 710.386 kb on + strandat 710.386 kb on + strandat 710.386 kb on + strandat 710.387 kb on - strandat 710.536 kb on + strandat 710.550 kb on + strandat 710.560 kb on + strandat 710.560 kb on + strandat 710.560 kb on + strandat 710.560 kb on + strandat 710.560 kb on + strandat 710.560 kb on + strandat 710.560 kb on + strandat 710.561 kb on - strandat 710.561 kb on - strandat 710.599 kb on + strandat 710.599 kb on + strandat 710.632 kb on + strandat 710.812 kb on + strand, within PfGW456L13_620at 710.812 kb on + strand, within PfGW456L13_620at 710.812 kb on + strand, within PfGW456L13_620at 710.812 kb on + strand, within PfGW456L13_620at 710.812 kb on + strand, within PfGW456L13_620at 710.813 kb on - strand, within PfGW456L13_620at 710.813 kb on - strand, within PfGW456L13_620at 710.813 kb on - strand, within PfGW456L13_620at 710.935 kb on + strand, within PfGW456L13_620at 710.936 kb on - strand, within PfGW456L13_620at 710.936 kb on - strand, within PfGW456L13_620at 710.936 kb on - strand, within PfGW456L13_620at 710.936 kb on - strand, within PfGW456L13_620at 710.936 kb on - strand, within PfGW456L13_620at 711.204 kb on + strand, within PfGW456L13_620at 711.204 kb on + strand, within PfGW456L13_620at 711.204 kb on + strand, within PfGW456L13_620at 711.205 kb on - strand, within PfGW456L13_620at 711.205 kb on - strand, within PfGW456L13_620at 711.255 kb on + strand, within PfGW456L13_620at 711.255 kb on + strand, within PfGW456L13_620at 711.255 kb on + strand, within PfGW456L13_620at 711.256 kb on - strand, within PfGW456L13_620at 711.256 kb on - strand, within PfGW456L13_620at 711.256 kb on - strand, within PfGW456L13_620at 711.256 kb on - strand, within PfGW456L13_620at 711.256 kb on - strand, within PfGW456L13_620at 711.256 kb on - strand, within PfGW456L13_620at 711.267 kb on - strand, within PfGW456L13_620at 711.283 kb on + strand, within PfGW456L13_620at 711.283 kb on + strand, within PfGW456L13_620at 711.284 kb on - strand, within PfGW456L13_620at 711.284 kb on - strand, within PfGW456L13_620at 711.284 kb on - strand, within PfGW456L13_620at 711.284 kb on - strand, within PfGW456L13_620at 711.346 kb on + strand, within PfGW456L13_620

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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708,730 - PfGW456L13_618 0.44 -0.1
708,780 + PfGW456L13_618 0.48 -0.2
708,780 + PfGW456L13_618 0.48 -0.1
708,780 + PfGW456L13_618 0.48 +0.7
708,780 + PfGW456L13_618 0.48 -1.5
708,780 + PfGW456L13_618 0.48 -0.2
708,781 - PfGW456L13_618 0.48 -0.1
708,781 - PfGW456L13_618 0.48 +1.1
708,781 - PfGW456L13_618 0.48 +1.0
708,781 - PfGW456L13_618 0.48 +0.0
708,781 - PfGW456L13_618 0.48 -0.0
708,781 - PfGW456L13_618 0.48 -0.3
708,781 - PfGW456L13_618 0.48 +1.1
708,991 + PfGW456L13_618 0.61 +1.1
708,991 + PfGW456L13_618 0.61 +1.1
708,992 - PfGW456L13_618 0.62 +0.5
709,033 - PfGW456L13_618 0.64 +0.5
709,202 - PfGW456L13_618 0.75 +1.3
709,226 + PfGW456L13_618 0.77 +0.1
709,227 - PfGW456L13_618 0.77 +0.6
709,313 - PfGW456L13_618 0.83 +0.4
709,662 - -1.9
709,671 + +0.6
709,671 + -1.0
709,672 - -0.3
709,672 - -0.2
709,672 - -1.1
709,672 - -0.3
709,749 + PfGW456L13_619 0.11 +0.6
709,749 + PfGW456L13_619 0.11 +1.2
709,749 + PfGW456L13_619 0.11 +0.2
709,779 + PfGW456L13_619 0.15 -0.1
709,780 - PfGW456L13_619 0.15 -1.0
709,780 - PfGW456L13_619 0.15 -0.3
709,795 + PfGW456L13_619 0.17 -0.3
709,795 + PfGW456L13_619 0.17 +1.2
709,795 + PfGW456L13_619 0.17 +1.0
709,795 + PfGW456L13_619 0.17 -0.7
709,795 + PfGW456L13_619 0.17 +1.0
709,795 + PfGW456L13_619 0.17 +0.9
709,796 - PfGW456L13_619 0.17 +0.2
709,796 - PfGW456L13_619 0.17 -0.4
709,799 + PfGW456L13_619 0.18 +0.7
709,799 + PfGW456L13_619 0.18 -0.9
709,799 + PfGW456L13_619 0.18 +0.2
709,799 + PfGW456L13_619 0.18 +2.7
709,799 + PfGW456L13_619 0.18 -0.3
709,800 - PfGW456L13_619 0.18 -1.1
709,800 - PfGW456L13_619 0.18 -0.2
709,800 - PfGW456L13_619 0.18 -0.9
709,800 - PfGW456L13_619 0.18 -1.9
709,800 - PfGW456L13_619 0.18 +0.1
709,800 - PfGW456L13_619 0.18 +0.8
710,079 + PfGW456L13_619 0.56 -0.7
710,143 + PfGW456L13_619 0.65 +1.1
710,317 + PfGW456L13_619 0.88 -3.0
710,318 - PfGW456L13_619 0.89 -0.8
710,318 - PfGW456L13_619 0.89 +1.1
710,318 - PfGW456L13_619 0.89 +0.3
710,386 + -0.6
710,386 + +0.7
710,386 + -0.1
710,387 - +0.7
710,536 + +0.9
710,550 + +0.2
710,560 + +0.4
710,560 + -1.4
710,560 + -3.0
710,560 + -1.0
710,560 + +0.8
710,560 + -1.6
710,560 + +0.1
710,561 - -0.3
710,561 - +0.4
710,599 + +0.3
710,599 + +1.3
710,632 + +0.4
710,812 + PfGW456L13_620 0.16 -0.5
710,812 + PfGW456L13_620 0.16 +0.2
710,812 + PfGW456L13_620 0.16 -1.9
710,812 + PfGW456L13_620 0.16 -1.3
710,812 + PfGW456L13_620 0.16 +1.2
710,813 - PfGW456L13_620 0.16 +0.6
710,813 - PfGW456L13_620 0.16 -0.5
710,813 - PfGW456L13_620 0.16 +0.5
710,935 + PfGW456L13_620 0.27 -1.0
710,936 - PfGW456L13_620 0.27 -1.0
710,936 - PfGW456L13_620 0.27 -0.2
710,936 - PfGW456L13_620 0.27 -0.1
710,936 - PfGW456L13_620 0.27 +0.9
710,936 - PfGW456L13_620 0.27 -0.3
711,204 + PfGW456L13_620 0.53 -2.7
711,204 + PfGW456L13_620 0.53 +0.7
711,204 + PfGW456L13_620 0.53 -2.5
711,205 - PfGW456L13_620 0.53 +0.4
711,205 - PfGW456L13_620 0.53 +0.3
711,255 + PfGW456L13_620 0.58 -1.3
711,255 + PfGW456L13_620 0.58 +0.4
711,255 + PfGW456L13_620 0.58 +0.1
711,256 - PfGW456L13_620 0.58 +0.2
711,256 - PfGW456L13_620 0.58 +0.4
711,256 - PfGW456L13_620 0.58 -0.2
711,256 - PfGW456L13_620 0.58 +0.4
711,256 - PfGW456L13_620 0.58 +0.9
711,256 - PfGW456L13_620 0.58 +0.9
711,267 - PfGW456L13_620 0.59 -1.9
711,283 + PfGW456L13_620 0.60 -1.5
711,283 + PfGW456L13_620 0.60 +0.1
711,284 - PfGW456L13_620 0.60 +0.6
711,284 - PfGW456L13_620 0.60 -0.8
711,284 - PfGW456L13_620 0.60 -1.7
711,284 - PfGW456L13_620 0.60 +0.2
711,346 + PfGW456L13_620 0.66 +0.4

Or see this region's nucleotide sequence