Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_577

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_576 and PfGW456L13_577 overlap by 19 nucleotidesPfGW456L13_577 and PfGW456L13_578 are separated by 189 nucleotides PfGW456L13_576 - PUTATIVE ZINC PROTEASE PROTEIN, at 669,922 to 670,947 _576 PfGW456L13_577 - Fused spore maturation proteins A and B, at 670,929 to 672,158 _577 PfGW456L13_578 - Glutamate-aspartate carrier protein, at 672,348 to 673,679 _578 Position (kb) 670 671 672 673Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 669.952 kb on + strandat 669.952 kb on + strandat 669.952 kb on + strandat 669.952 kb on + strandat 669.952 kb on + strandat 669.953 kb on - strandat 669.953 kb on - strandat 669.953 kb on - strandat 669.953 kb on - strandat 669.953 kb on - strandat 669.953 kb on - strandat 669.953 kb on - strandat 669.953 kb on - strandat 669.953 kb on - strandat 669.953 kb on - strandat 669.953 kb on - strandat 669.955 kb on + strandat 669.955 kb on + strandat 669.956 kb on - strandat 669.956 kb on - strandat 669.956 kb on - strandat 669.956 kb on - strandat 669.956 kb on - strandat 670.114 kb on - strand, within PfGW456L13_576at 670.123 kb on + strand, within PfGW456L13_576at 670.132 kb on + strand, within PfGW456L13_576at 670.133 kb on - strand, within PfGW456L13_576at 670.246 kb on + strand, within PfGW456L13_576at 670.249 kb on + strand, within PfGW456L13_576at 670.249 kb on + strand, within PfGW456L13_576at 670.249 kb on + strand, within PfGW456L13_576at 670.249 kb on + strand, within PfGW456L13_576at 670.249 kb on + strand, within PfGW456L13_576at 670.249 kb on + strand, within PfGW456L13_576at 670.250 kb on - strand, within PfGW456L13_576at 670.250 kb on - strand, within PfGW456L13_576at 670.250 kb on - strand, within PfGW456L13_576at 670.250 kb on - strand, within PfGW456L13_576at 670.250 kb on - strand, within PfGW456L13_576at 670.330 kb on + strand, within PfGW456L13_576at 670.331 kb on - strand, within PfGW456L13_576at 670.438 kb on + strand, within PfGW456L13_576at 670.438 kb on + strand, within PfGW456L13_576at 670.438 kb on + strand, within PfGW456L13_576at 670.438 kb on + strand, within PfGW456L13_576at 670.438 kb on + strand, within PfGW456L13_576at 670.438 kb on + strand, within PfGW456L13_576at 670.438 kb on + strand, within PfGW456L13_576at 670.438 kb on + strand, within PfGW456L13_576at 670.439 kb on - strand, within PfGW456L13_576at 670.439 kb on - strand, within PfGW456L13_576at 670.439 kb on - strand, within PfGW456L13_576at 670.439 kb on - strand, within PfGW456L13_576at 670.498 kb on - strand, within PfGW456L13_576at 670.612 kb on + strand, within PfGW456L13_576at 670.612 kb on + strand, within PfGW456L13_576at 670.613 kb on - strand, within PfGW456L13_576at 670.613 kb on - strand, within PfGW456L13_576at 670.684 kb on + strand, within PfGW456L13_576at 670.684 kb on + strand, within PfGW456L13_576at 670.727 kb on - strand, within PfGW456L13_576at 670.783 kb on + strand, within PfGW456L13_576at 670.783 kb on + strand, within PfGW456L13_576at 670.784 kb on - strand, within PfGW456L13_576at 670.784 kb on - strand, within PfGW456L13_576at 670.784 kb on - strand, within PfGW456L13_576at 670.784 kb on - strand, within PfGW456L13_576at 670.784 kb on - strand, within PfGW456L13_576at 670.849 kb on + strandat 670.958 kb on + strandat 671.041 kb on + strandat 671.042 kb on - strandat 671.042 kb on - strandat 671.042 kb on - strandat 671.056 kb on + strand, within PfGW456L13_577at 671.056 kb on + strand, within PfGW456L13_577at 671.056 kb on + strand, within PfGW456L13_577at 671.056 kb on + strand, within PfGW456L13_577at 671.056 kb on + strand, within PfGW456L13_577at 671.056 kb on + strand, within PfGW456L13_577at 671.056 kb on + strand, within PfGW456L13_577at 671.056 kb on + strand, within PfGW456L13_577at 671.056 kb on + strand, within PfGW456L13_577at 671.056 kb on + strand, within PfGW456L13_577at 671.056 kb on + strand, within PfGW456L13_577at 671.056 kb on + strand, within PfGW456L13_577at 671.056 kb on + strand, within PfGW456L13_577at 671.056 kb on + strand, within PfGW456L13_577at 671.057 kb on - strand, within PfGW456L13_577at 671.057 kb on - strand, within PfGW456L13_577at 671.057 kb on - strand, within PfGW456L13_577at 671.057 kb on - strand, within PfGW456L13_577at 671.057 kb on - strand, within PfGW456L13_577at 671.057 kb on - strand, within PfGW456L13_577at 671.057 kb on - strand, within PfGW456L13_577at 671.057 kb on - strand, within PfGW456L13_577at 671.057 kb on - strand, within PfGW456L13_577at 671.057 kb on - strand, within PfGW456L13_577at 671.057 kb on - strand, within PfGW456L13_577at 671.057 kb on - strand, within PfGW456L13_577at 671.057 kb on - strand, within PfGW456L13_577at 671.057 kb on - strand, within PfGW456L13_577at 671.377 kb on + strand, within PfGW456L13_577at 671.377 kb on + strand, within PfGW456L13_577at 671.377 kb on + strand, within PfGW456L13_577at 671.378 kb on - strand, within PfGW456L13_577at 671.539 kb on + strand, within PfGW456L13_577at 671.539 kb on + strand, within PfGW456L13_577at 671.680 kb on + strand, within PfGW456L13_577at 671.680 kb on + strand, within PfGW456L13_577at 671.680 kb on + strand, within PfGW456L13_577at 671.681 kb on - strand, within PfGW456L13_577at 671.730 kb on + strand, within PfGW456L13_577at 671.731 kb on - strand, within PfGW456L13_577at 671.855 kb on + strand, within PfGW456L13_577at 671.855 kb on + strand, within PfGW456L13_577at 671.856 kb on - strand, within PfGW456L13_577at 671.856 kb on - strand, within PfGW456L13_577at 672.115 kb on - strandat 672.115 kb on - strandat 672.241 kb on + strandat 672.241 kb on + strandat 672.242 kb on - strandat 672.242 kb on - strandat 672.242 kb on - strandat 672.242 kb on - strandat 672.439 kb on + strandat 672.439 kb on + strandat 672.439 kb on + strandat 672.439 kb on + strandat 672.440 kb on - strandat 672.440 kb on - strandat 672.440 kb on - strandat 672.440 kb on - strandat 672.564 kb on - strand, within PfGW456L13_578at 672.591 kb on + strand, within PfGW456L13_578at 672.613 kb on - strand, within PfGW456L13_578at 672.691 kb on + strand, within PfGW456L13_578at 672.692 kb on - strand, within PfGW456L13_578at 672.692 kb on - strand, within PfGW456L13_578at 672.692 kb on - strand, within PfGW456L13_578at 672.859 kb on + strand, within PfGW456L13_578at 672.860 kb on - strand, within PfGW456L13_578at 672.860 kb on - strand, within PfGW456L13_578at 672.860 kb on - strand, within PfGW456L13_578at 672.860 kb on - strand, within PfGW456L13_578at 672.867 kb on + strand, within PfGW456L13_578at 672.868 kb on - strand, within PfGW456L13_578at 672.971 kb on - strand, within PfGW456L13_578at 672.971 kb on - strand, within PfGW456L13_578at 672.971 kb on - strand, within PfGW456L13_578at 673.066 kb on + strand, within PfGW456L13_578at 673.066 kb on + strand, within PfGW456L13_578at 673.066 kb on + strand, within PfGW456L13_578at 673.067 kb on - strand, within PfGW456L13_578at 673.067 kb on - strand, within PfGW456L13_578at 673.067 kb on - strand, within PfGW456L13_578at 673.067 kb on - strand, within PfGW456L13_578at 673.067 kb on - strand, within PfGW456L13_578

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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669,952 + +0.1
669,952 + +0.7
669,952 + -1.1
669,952 + -0.2
669,952 + +0.7
669,953 - +2.0
669,953 - +1.2
669,953 - -0.3
669,953 - +0.6
669,953 - +0.8
669,953 - +0.8
669,953 - -1.9
669,953 - -1.7
669,953 - +0.2
669,953 - -1.2
669,953 - +0.7
669,955 + +0.9
669,955 + -0.9
669,956 - -0.8
669,956 - -0.5
669,956 - -1.0
669,956 - -1.3
669,956 - -3.5
670,114 - PfGW456L13_576 0.19 +0.7
670,123 + PfGW456L13_576 0.20 -0.6
670,132 + PfGW456L13_576 0.20 -1.1
670,133 - PfGW456L13_576 0.21 -0.9
670,246 + PfGW456L13_576 0.32 -0.1
670,249 + PfGW456L13_576 0.32 -0.9
670,249 + PfGW456L13_576 0.32 -0.5
670,249 + PfGW456L13_576 0.32 +1.3
670,249 + PfGW456L13_576 0.32 -0.4
670,249 + PfGW456L13_576 0.32 +2.3
670,249 + PfGW456L13_576 0.32 -1.3
670,250 - PfGW456L13_576 0.32 +0.2
670,250 - PfGW456L13_576 0.32 -0.6
670,250 - PfGW456L13_576 0.32 -0.5
670,250 - PfGW456L13_576 0.32 -2.0
670,250 - PfGW456L13_576 0.32 -0.4
670,330 + PfGW456L13_576 0.40 +0.5
670,331 - PfGW456L13_576 0.40 -0.2
670,438 + PfGW456L13_576 0.50 +0.6
670,438 + PfGW456L13_576 0.50 -0.3
670,438 + PfGW456L13_576 0.50 +0.9
670,438 + PfGW456L13_576 0.50 +0.6
670,438 + PfGW456L13_576 0.50 +1.2
670,438 + PfGW456L13_576 0.50 +0.1
670,438 + PfGW456L13_576 0.50 +2.2
670,438 + PfGW456L13_576 0.50 +0.8
670,439 - PfGW456L13_576 0.50 +0.3
670,439 - PfGW456L13_576 0.50 +1.1
670,439 - PfGW456L13_576 0.50 +0.7
670,439 - PfGW456L13_576 0.50 -0.3
670,498 - PfGW456L13_576 0.56 -0.9
670,612 + PfGW456L13_576 0.67 +1.5
670,612 + PfGW456L13_576 0.67 -0.2
670,613 - PfGW456L13_576 0.67 +1.5
670,613 - PfGW456L13_576 0.67 -0.3
670,684 + PfGW456L13_576 0.74 -0.5
670,684 + PfGW456L13_576 0.74 -1.0
670,727 - PfGW456L13_576 0.78 -0.6
670,783 + PfGW456L13_576 0.84 +0.9
670,783 + PfGW456L13_576 0.84 +0.2
670,784 - PfGW456L13_576 0.84 -0.1
670,784 - PfGW456L13_576 0.84 +0.8
670,784 - PfGW456L13_576 0.84 +0.6
670,784 - PfGW456L13_576 0.84 +1.3
670,784 - PfGW456L13_576 0.84 +1.1
670,849 + -0.8
670,958 + +2.0
671,041 + +1.0
671,042 - +1.6
671,042 - -0.1
671,042 - +1.2
671,056 + PfGW456L13_577 0.10 +0.8
671,056 + PfGW456L13_577 0.10 +0.8
671,056 + PfGW456L13_577 0.10 +1.4
671,056 + PfGW456L13_577 0.10 +1.1
671,056 + PfGW456L13_577 0.10 +0.3
671,056 + PfGW456L13_577 0.10 +2.1
671,056 + PfGW456L13_577 0.10 +2.1
671,056 + PfGW456L13_577 0.10 +0.2
671,056 + PfGW456L13_577 0.10 +0.4
671,056 + PfGW456L13_577 0.10 +0.8
671,056 + PfGW456L13_577 0.10 +1.5
671,056 + PfGW456L13_577 0.10 -0.5
671,056 + PfGW456L13_577 0.10 +1.4
671,056 + PfGW456L13_577 0.10 +0.8
671,057 - PfGW456L13_577 0.10 +0.9
671,057 - PfGW456L13_577 0.10 +1.0
671,057 - PfGW456L13_577 0.10 -2.1
671,057 - PfGW456L13_577 0.10 +1.6
671,057 - PfGW456L13_577 0.10 +1.1
671,057 - PfGW456L13_577 0.10 +1.3
671,057 - PfGW456L13_577 0.10 +1.4
671,057 - PfGW456L13_577 0.10 +0.6
671,057 - PfGW456L13_577 0.10 +0.6
671,057 - PfGW456L13_577 0.10 +0.4
671,057 - PfGW456L13_577 0.10 +1.1
671,057 - PfGW456L13_577 0.10 +1.1
671,057 - PfGW456L13_577 0.10 +1.3
671,057 - PfGW456L13_577 0.10 +1.5
671,377 + PfGW456L13_577 0.36 +0.8
671,377 + PfGW456L13_577 0.36 +2.5
671,377 + PfGW456L13_577 0.36 +0.3
671,378 - PfGW456L13_577 0.37 +0.7
671,539 + PfGW456L13_577 0.50 +0.6
671,539 + PfGW456L13_577 0.50 -0.6
671,680 + PfGW456L13_577 0.61 +1.1
671,680 + PfGW456L13_577 0.61 +0.9
671,680 + PfGW456L13_577 0.61 +1.6
671,681 - PfGW456L13_577 0.61 +0.8
671,730 + PfGW456L13_577 0.65 +0.6
671,731 - PfGW456L13_577 0.65 +0.3
671,855 + PfGW456L13_577 0.75 +0.2
671,855 + PfGW456L13_577 0.75 +0.5
671,856 - PfGW456L13_577 0.75 +0.9
671,856 - PfGW456L13_577 0.75 +1.6
672,115 - +0.5
672,115 - +0.1
672,241 + -0.3
672,241 + +0.9
672,242 - -1.0
672,242 - -0.3
672,242 - -0.5
672,242 - +0.7
672,439 + +0.6
672,439 + +0.7
672,439 + +0.3
672,439 + +0.4
672,440 - -1.9
672,440 - +0.8
672,440 - +0.1
672,440 - -2.3
672,564 - PfGW456L13_578 0.16 +0.5
672,591 + PfGW456L13_578 0.18 +0.3
672,613 - PfGW456L13_578 0.20 -0.5
672,691 + PfGW456L13_578 0.26 -1.9
672,692 - PfGW456L13_578 0.26 -1.3
672,692 - PfGW456L13_578 0.26 +1.7
672,692 - PfGW456L13_578 0.26 -0.3
672,859 + PfGW456L13_578 0.38 +0.3
672,860 - PfGW456L13_578 0.38 -0.8
672,860 - PfGW456L13_578 0.38 -0.7
672,860 - PfGW456L13_578 0.38 -2.0
672,860 - PfGW456L13_578 0.38 +0.6
672,867 + PfGW456L13_578 0.39 -0.2
672,868 - PfGW456L13_578 0.39 -0.1
672,971 - PfGW456L13_578 0.47 +0.2
672,971 - PfGW456L13_578 0.47 -0.7
672,971 - PfGW456L13_578 0.47 -1.5
673,066 + PfGW456L13_578 0.54 +0.8
673,066 + PfGW456L13_578 0.54 +0.1
673,066 + PfGW456L13_578 0.54 +1.2
673,067 - PfGW456L13_578 0.54 -0.2
673,067 - PfGW456L13_578 0.54 +0.3
673,067 - PfGW456L13_578 0.54 -0.9
673,067 - PfGW456L13_578 0.54 -1.0
673,067 - PfGW456L13_578 0.54 -2.2

Or see this region's nucleotide sequence