Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_5112

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_5111 and PfGW456L13_5112 are separated by 229 nucleotidesPfGW456L13_5112 and PfGW456L13_5113 are separated by 115 nucleotides PfGW456L13_5111 - Sodium-dependent transporter family protein, at 5,701,176 to 5,702,468 _5111 PfGW456L13_5112 - tmRNA-binding protein SmpB, at 5,702,698 to 5,703,180 _5112 PfGW456L13_5113 - Lactate-responsive regulator LldR in Enterobacteria, GntR family, at 5,703,296 to 5,704,063 _5113 Position (kb) 5702 5703 5704Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5701.840 kb on + strand, within PfGW456L13_5111at 5701.840 kb on + strand, within PfGW456L13_5111at 5701.841 kb on - strand, within PfGW456L13_5111at 5701.841 kb on - strand, within PfGW456L13_5111at 5701.841 kb on - strand, within PfGW456L13_5111at 5701.841 kb on - strand, within PfGW456L13_5111at 5701.841 kb on - strand, within PfGW456L13_5111at 5701.841 kb on - strand, within PfGW456L13_5111at 5701.841 kb on - strand, within PfGW456L13_5111at 5701.841 kb on - strand, within PfGW456L13_5111at 5701.841 kb on - strand, within PfGW456L13_5111at 5701.841 kb on - strand, within PfGW456L13_5111at 5701.841 kb on - strand, within PfGW456L13_5111at 5701.841 kb on - strand, within PfGW456L13_5111at 5701.841 kb on - strand, within PfGW456L13_5111at 5701.841 kb on - strand, within PfGW456L13_5111at 5701.841 kb on - strand, within PfGW456L13_5111at 5701.849 kb on + strand, within PfGW456L13_5111at 5701.850 kb on - strand, within PfGW456L13_5111at 5701.850 kb on - strand, within PfGW456L13_5111at 5701.850 kb on - strand, within PfGW456L13_5111at 5701.991 kb on - strand, within PfGW456L13_5111at 5702.156 kb on - strand, within PfGW456L13_5111at 5702.156 kb on - strand, within PfGW456L13_5111at 5702.216 kb on - strand, within PfGW456L13_5111at 5702.216 kb on - strand, within PfGW456L13_5111at 5702.216 kb on - strand, within PfGW456L13_5111at 5702.216 kb on - strand, within PfGW456L13_5111at 5702.216 kb on - strand, within PfGW456L13_5111at 5702.216 kb on - strand, within PfGW456L13_5111at 5702.216 kb on - strand, within PfGW456L13_5111at 5702.216 kb on - strand, within PfGW456L13_5111at 5702.246 kb on - strand, within PfGW456L13_5111at 5702.246 kb on - strand, within PfGW456L13_5111at 5702.471 kb on - strandat 5702.471 kb on - strandat 5702.471 kb on - strandat 5702.471 kb on - strandat 5702.487 kb on - strandat 5702.487 kb on - strandat 5702.490 kb on - strandat 5702.524 kb on - strandat 5702.524 kb on - strandat 5702.584 kb on - strandat 5702.649 kb on + strandat 5702.649 kb on + strandat 5702.649 kb on + strandat 5702.649 kb on + strandat 5702.649 kb on + strandat 5702.649 kb on + strandat 5702.683 kb on + strandat 5702.683 kb on + strandat 5702.683 kb on + strandat 5702.683 kb on + strandat 5702.858 kb on + strand, within PfGW456L13_5112at 5703.237 kb on - strandat 5703.297 kb on + strandat 5703.298 kb on - strandat 5703.372 kb on + strandat 5703.372 kb on + strandat 5703.372 kb on + strandat 5703.373 kb on - strand, within PfGW456L13_5113at 5703.373 kb on - strand, within PfGW456L13_5113at 5703.373 kb on - strand, within PfGW456L13_5113at 5703.373 kb on - strand, within PfGW456L13_5113at 5703.435 kb on + strand, within PfGW456L13_5113at 5703.435 kb on + strand, within PfGW456L13_5113at 5703.435 kb on + strand, within PfGW456L13_5113at 5703.436 kb on - strand, within PfGW456L13_5113at 5703.436 kb on - strand, within PfGW456L13_5113at 5703.489 kb on + strand, within PfGW456L13_5113at 5703.489 kb on + strand, within PfGW456L13_5113at 5703.489 kb on + strand, within PfGW456L13_5113at 5703.489 kb on + strand, within PfGW456L13_5113at 5703.489 kb on + strand, within PfGW456L13_5113at 5703.489 kb on + strand, within PfGW456L13_5113at 5703.489 kb on + strand, within PfGW456L13_5113at 5703.490 kb on - strand, within PfGW456L13_5113at 5703.490 kb on - strand, within PfGW456L13_5113at 5703.490 kb on - strand, within PfGW456L13_5113at 5703.490 kb on - strand, within PfGW456L13_5113at 5703.490 kb on - strand, within PfGW456L13_5113at 5703.490 kb on - strand, within PfGW456L13_5113at 5703.490 kb on - strand, within PfGW456L13_5113at 5703.490 kb on - strand, within PfGW456L13_5113at 5703.500 kb on + strand, within PfGW456L13_5113at 5703.500 kb on + strand, within PfGW456L13_5113at 5703.500 kb on + strand, within PfGW456L13_5113at 5703.500 kb on + strand, within PfGW456L13_5113at 5703.500 kb on + strand, within PfGW456L13_5113at 5703.500 kb on + strand, within PfGW456L13_5113at 5703.500 kb on + strand, within PfGW456L13_5113at 5703.500 kb on + strand, within PfGW456L13_5113at 5703.500 kb on + strand, within PfGW456L13_5113at 5703.500 kb on + strand, within PfGW456L13_5113at 5703.500 kb on + strand, within PfGW456L13_5113at 5703.500 kb on + strand, within PfGW456L13_5113at 5703.500 kb on + strand, within PfGW456L13_5113at 5703.500 kb on + strand, within PfGW456L13_5113at 5703.500 kb on + strand, within PfGW456L13_5113at 5703.500 kb on + strand, within PfGW456L13_5113at 5703.500 kb on + strand, within PfGW456L13_5113at 5703.500 kb on + strand, within PfGW456L13_5113at 5703.500 kb on + strand, within PfGW456L13_5113at 5703.501 kb on - strand, within PfGW456L13_5113at 5703.501 kb on - strand, within PfGW456L13_5113at 5703.501 kb on - strand, within PfGW456L13_5113at 5703.501 kb on - strand, within PfGW456L13_5113at 5703.501 kb on - strand, within PfGW456L13_5113at 5703.501 kb on - strand, within PfGW456L13_5113at 5703.501 kb on - strand, within PfGW456L13_5113at 5703.501 kb on - strand, within PfGW456L13_5113at 5703.501 kb on - strand, within PfGW456L13_5113at 5703.501 kb on - strand, within PfGW456L13_5113at 5703.501 kb on - strand, within PfGW456L13_5113at 5703.501 kb on - strand, within PfGW456L13_5113at 5703.501 kb on - strand, within PfGW456L13_5113at 5703.501 kb on - strand, within PfGW456L13_5113at 5703.501 kb on - strand, within PfGW456L13_5113at 5703.501 kb on - strand, within PfGW456L13_5113at 5703.501 kb on - strand, within PfGW456L13_5113at 5703.501 kb on - strand, within PfGW456L13_5113at 5703.501 kb on - strand, within PfGW456L13_5113at 5703.651 kb on + strand, within PfGW456L13_5113at 5703.652 kb on - strand, within PfGW456L13_5113at 5703.652 kb on - strand, within PfGW456L13_5113at 5703.662 kb on + strand, within PfGW456L13_5113at 5703.663 kb on - strand, within PfGW456L13_5113at 5703.724 kb on - strand, within PfGW456L13_5113at 5703.724 kb on - strand, within PfGW456L13_5113at 5703.724 kb on - strand, within PfGW456L13_5113at 5703.748 kb on + strand, within PfGW456L13_5113at 5703.748 kb on + strand, within PfGW456L13_5113at 5703.749 kb on - strand, within PfGW456L13_5113at 5703.749 kb on - strand, within PfGW456L13_5113at 5703.846 kb on + strand, within PfGW456L13_5113at 5703.846 kb on + strand, within PfGW456L13_5113at 5703.846 kb on + strand, within PfGW456L13_5113at 5703.846 kb on + strand, within PfGW456L13_5113at 5703.846 kb on + strand, within PfGW456L13_5113at 5703.846 kb on + strand, within PfGW456L13_5113at 5703.846 kb on + strand, within PfGW456L13_5113at 5703.846 kb on + strand, within PfGW456L13_5113at 5703.846 kb on + strand, within PfGW456L13_5113at 5703.846 kb on + strand, within PfGW456L13_5113at 5703.846 kb on + strand, within PfGW456L13_5113at 5703.847 kb on - strand, within PfGW456L13_5113at 5703.847 kb on - strand, within PfGW456L13_5113at 5703.847 kb on - strand, within PfGW456L13_5113at 5703.847 kb on - strand, within PfGW456L13_5113at 5703.847 kb on - strand, within PfGW456L13_5113at 5703.847 kb on - strand, within PfGW456L13_5113at 5703.847 kb on - strand, within PfGW456L13_5113at 5703.847 kb on - strand, within PfGW456L13_5113at 5703.847 kb on - strand, within PfGW456L13_5113at 5703.847 kb on - strand, within PfGW456L13_5113at 5703.847 kb on - strand, within PfGW456L13_5113at 5703.847 kb on - strand, within PfGW456L13_5113at 5703.847 kb on - strand, within PfGW456L13_5113at 5703.847 kb on - strand, within PfGW456L13_5113at 5703.847 kb on - strand, within PfGW456L13_5113at 5703.847 kb on - strand, within PfGW456L13_5113at 5704.021 kb on + strandat 5704.064 kb on - strandat 5704.072 kb on + strandat 5704.072 kb on + strandat 5704.073 kb on - strandat 5704.073 kb on - strandat 5704.154 kb on + strandat 5704.154 kb on + strandat 5704.155 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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5,701,840 + PfGW456L13_5111 0.51 +3.3
5,701,840 + PfGW456L13_5111 0.51 +0.9
5,701,841 - PfGW456L13_5111 0.51 -3.5
5,701,841 - PfGW456L13_5111 0.51 -0.5
5,701,841 - PfGW456L13_5111 0.51 -0.2
5,701,841 - PfGW456L13_5111 0.51 +1.9
5,701,841 - PfGW456L13_5111 0.51 -0.3
5,701,841 - PfGW456L13_5111 0.51 -0.5
5,701,841 - PfGW456L13_5111 0.51 -0.1
5,701,841 - PfGW456L13_5111 0.51 +0.5
5,701,841 - PfGW456L13_5111 0.51 +0.7
5,701,841 - PfGW456L13_5111 0.51 +0.3
5,701,841 - PfGW456L13_5111 0.51 +0.2
5,701,841 - PfGW456L13_5111 0.51 -2.4
5,701,841 - PfGW456L13_5111 0.51 -0.3
5,701,841 - PfGW456L13_5111 0.51 -1.5
5,701,841 - PfGW456L13_5111 0.51 +0.1
5,701,849 + PfGW456L13_5111 0.52 -0.3
5,701,850 - PfGW456L13_5111 0.52 +0.6
5,701,850 - PfGW456L13_5111 0.52 +0.9
5,701,850 - PfGW456L13_5111 0.52 -2.5
5,701,991 - PfGW456L13_5111 0.63 -0.8
5,702,156 - PfGW456L13_5111 0.76 +0.2
5,702,156 - PfGW456L13_5111 0.76 -0.3
5,702,216 - PfGW456L13_5111 0.80 +0.2
5,702,216 - PfGW456L13_5111 0.80 -0.0
5,702,216 - PfGW456L13_5111 0.80 +1.4
5,702,216 - PfGW456L13_5111 0.80 +1.0
5,702,216 - PfGW456L13_5111 0.80 +0.5
5,702,216 - PfGW456L13_5111 0.80 +0.3
5,702,216 - PfGW456L13_5111 0.80 -0.2
5,702,216 - PfGW456L13_5111 0.80 -0.0
5,702,246 - PfGW456L13_5111 0.83 -0.4
5,702,246 - PfGW456L13_5111 0.83 +1.9
5,702,471 - +0.8
5,702,471 - -0.2
5,702,471 - -2.2
5,702,471 - -0.7
5,702,487 - -0.8
5,702,487 - -0.4
5,702,490 - -1.3
5,702,524 - +0.4
5,702,524 - -1.2
5,702,584 - -0.0
5,702,649 + -2.2
5,702,649 + +0.0
5,702,649 + +1.4
5,702,649 + +0.6
5,702,649 + +0.3
5,702,649 + +2.3
5,702,683 + +0.2
5,702,683 + +1.4
5,702,683 + +1.0
5,702,683 + +0.2
5,702,858 + PfGW456L13_5112 0.33 -0.2
5,703,237 - +0.2
5,703,297 + +0.6
5,703,298 - -3.0
5,703,372 + +0.7
5,703,372 + +1.7
5,703,372 + +1.0
5,703,373 - PfGW456L13_5113 0.10 -0.8
5,703,373 - PfGW456L13_5113 0.10 +0.4
5,703,373 - PfGW456L13_5113 0.10 -0.8
5,703,373 - PfGW456L13_5113 0.10 +1.2
5,703,435 + PfGW456L13_5113 0.18 +1.3
5,703,435 + PfGW456L13_5113 0.18 +0.1
5,703,435 + PfGW456L13_5113 0.18 +0.2
5,703,436 - PfGW456L13_5113 0.18 +0.5
5,703,436 - PfGW456L13_5113 0.18 +3.3
5,703,489 + PfGW456L13_5113 0.25 +1.1
5,703,489 + PfGW456L13_5113 0.25 -0.5
5,703,489 + PfGW456L13_5113 0.25 -0.8
5,703,489 + PfGW456L13_5113 0.25 +0.1
5,703,489 + PfGW456L13_5113 0.25 +1.0
5,703,489 + PfGW456L13_5113 0.25 +0.3
5,703,489 + PfGW456L13_5113 0.25 +0.5
5,703,490 - PfGW456L13_5113 0.25 +1.5
5,703,490 - PfGW456L13_5113 0.25 +3.1
5,703,490 - PfGW456L13_5113 0.25 +1.3
5,703,490 - PfGW456L13_5113 0.25 +1.0
5,703,490 - PfGW456L13_5113 0.25 +1.3
5,703,490 - PfGW456L13_5113 0.25 +1.2
5,703,490 - PfGW456L13_5113 0.25 +0.2
5,703,490 - PfGW456L13_5113 0.25 -0.1
5,703,500 + PfGW456L13_5113 0.27 +0.1
5,703,500 + PfGW456L13_5113 0.27 +0.5
5,703,500 + PfGW456L13_5113 0.27 +0.5
5,703,500 + PfGW456L13_5113 0.27 -0.7
5,703,500 + PfGW456L13_5113 0.27 +1.3
5,703,500 + PfGW456L13_5113 0.27 +1.5
5,703,500 + PfGW456L13_5113 0.27 +0.9
5,703,500 + PfGW456L13_5113 0.27 +1.3
5,703,500 + PfGW456L13_5113 0.27 +0.6
5,703,500 + PfGW456L13_5113 0.27 +0.0
5,703,500 + PfGW456L13_5113 0.27 +1.0
5,703,500 + PfGW456L13_5113 0.27 +0.3
5,703,500 + PfGW456L13_5113 0.27 +2.0
5,703,500 + PfGW456L13_5113 0.27 +1.0
5,703,500 + PfGW456L13_5113 0.27 -0.4
5,703,500 + PfGW456L13_5113 0.27 +1.4
5,703,500 + PfGW456L13_5113 0.27 +1.5
5,703,500 + PfGW456L13_5113 0.27 +0.4
5,703,500 + PfGW456L13_5113 0.27 -1.1
5,703,501 - PfGW456L13_5113 0.27 +0.5
5,703,501 - PfGW456L13_5113 0.27 +0.2
5,703,501 - PfGW456L13_5113 0.27 +0.4
5,703,501 - PfGW456L13_5113 0.27 +0.9
5,703,501 - PfGW456L13_5113 0.27 +1.0
5,703,501 - PfGW456L13_5113 0.27 +0.9
5,703,501 - PfGW456L13_5113 0.27 +2.0
5,703,501 - PfGW456L13_5113 0.27 +0.3
5,703,501 - PfGW456L13_5113 0.27 +0.6
5,703,501 - PfGW456L13_5113 0.27 +1.7
5,703,501 - PfGW456L13_5113 0.27 +1.1
5,703,501 - PfGW456L13_5113 0.27 -0.2
5,703,501 - PfGW456L13_5113 0.27 -0.5
5,703,501 - PfGW456L13_5113 0.27 +0.9
5,703,501 - PfGW456L13_5113 0.27 +0.9
5,703,501 - PfGW456L13_5113 0.27 +0.6
5,703,501 - PfGW456L13_5113 0.27 +0.3
5,703,501 - PfGW456L13_5113 0.27 +1.7
5,703,501 - PfGW456L13_5113 0.27 -0.5
5,703,651 + PfGW456L13_5113 0.46 +1.7
5,703,652 - PfGW456L13_5113 0.46 -1.2
5,703,652 - PfGW456L13_5113 0.46 +0.3
5,703,662 + PfGW456L13_5113 0.48 +0.5
5,703,663 - PfGW456L13_5113 0.48 -0.7
5,703,724 - PfGW456L13_5113 0.56 +0.4
5,703,724 - PfGW456L13_5113 0.56 -0.8
5,703,724 - PfGW456L13_5113 0.56 +0.3
5,703,748 + PfGW456L13_5113 0.59 +0.2
5,703,748 + PfGW456L13_5113 0.59 +2.5
5,703,749 - PfGW456L13_5113 0.59 +1.0
5,703,749 - PfGW456L13_5113 0.59 +0.4
5,703,846 + PfGW456L13_5113 0.72 -2.4
5,703,846 + PfGW456L13_5113 0.72 -0.1
5,703,846 + PfGW456L13_5113 0.72 +1.9
5,703,846 + PfGW456L13_5113 0.72 +1.7
5,703,846 + PfGW456L13_5113 0.72 +0.8
5,703,846 + PfGW456L13_5113 0.72 -0.1
5,703,846 + PfGW456L13_5113 0.72 +1.2
5,703,846 + PfGW456L13_5113 0.72 +0.7
5,703,846 + PfGW456L13_5113 0.72 +0.6
5,703,846 + PfGW456L13_5113 0.72 +2.6
5,703,846 + PfGW456L13_5113 0.72 +0.1
5,703,847 - PfGW456L13_5113 0.72 +0.4
5,703,847 - PfGW456L13_5113 0.72 +0.6
5,703,847 - PfGW456L13_5113 0.72 +0.0
5,703,847 - PfGW456L13_5113 0.72 -0.0
5,703,847 - PfGW456L13_5113 0.72 +2.1
5,703,847 - PfGW456L13_5113 0.72 +1.1
5,703,847 - PfGW456L13_5113 0.72 +0.7
5,703,847 - PfGW456L13_5113 0.72 +0.9
5,703,847 - PfGW456L13_5113 0.72 +0.0
5,703,847 - PfGW456L13_5113 0.72 +0.2
5,703,847 - PfGW456L13_5113 0.72 +0.4
5,703,847 - PfGW456L13_5113 0.72 -0.2
5,703,847 - PfGW456L13_5113 0.72 +0.5
5,703,847 - PfGW456L13_5113 0.72 -0.7
5,703,847 - PfGW456L13_5113 0.72 +1.3
5,703,847 - PfGW456L13_5113 0.72 +0.4
5,704,021 + -2.2
5,704,064 - -0.6
5,704,072 + +1.4
5,704,072 + +0.2
5,704,073 - +2.1
5,704,073 - +0.8
5,704,154 + +0.9
5,704,154 + -0.5
5,704,155 - -0.3

Or see this region's nucleotide sequence