Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_5100

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_5099 and PfGW456L13_5100 are separated by 116 nucleotidesPfGW456L13_5100 and PfGW456L13_5101 are separated by 259 nucleotides PfGW456L13_5099 - Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), at 5,687,792 to 5,691,013 _5099 PfGW456L13_5100 - Carbamoyl-phosphate synthase small chain (EC 6.3.5.5), at 5,691,130 to 5,692,266 _5100 PfGW456L13_5101 - 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8), at 5,692,526 to 5,693,329 _5101 Position (kb) 5691 5692 5693Strain fitness (log2 ratio) -3 -2 -1 0 1at 5690.466 kb on + strand, within PfGW456L13_5099at 5690.993 kb on - strandat 5691.114 kb on - strandat 5691.114 kb on - strandat 5691.114 kb on - strandat 5691.114 kb on - strandat 5691.114 kb on - strandat 5691.114 kb on - strandat 5691.114 kb on - strandat 5691.114 kb on - strandat 5691.114 kb on - strandat 5691.114 kb on - strandat 5691.114 kb on - strandat 5691.114 kb on - strandat 5692.280 kb on - strandat 5692.284 kb on - strandat 5692.284 kb on - strandat 5692.312 kb on - strandat 5692.312 kb on - strandat 5692.330 kb on - strandat 5692.330 kb on - strandat 5692.330 kb on - strandat 5692.330 kb on - strandat 5692.362 kb on - strandat 5692.362 kb on - strandat 5692.362 kb on - strandat 5692.527 kb on + strandat 5692.541 kb on + strandat 5692.541 kb on + strandat 5692.541 kb on + strandat 5692.542 kb on - strandat 5692.542 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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5,690,466 + PfGW456L13_5099 0.83 -2.2
5,690,993 - -2.9
5,691,114 - -1.0
5,691,114 - -2.0
5,691,114 - -0.0
5,691,114 - -2.9
5,691,114 - +1.2
5,691,114 - +0.4
5,691,114 - -1.5
5,691,114 - -0.5
5,691,114 - +1.2
5,691,114 - -1.4
5,691,114 - -1.1
5,691,114 - +1.4
5,692,280 - +0.9
5,692,284 - -1.9
5,692,284 - +0.2
5,692,312 - -1.3
5,692,312 - -0.0
5,692,330 - +0.1
5,692,330 - -0.6
5,692,330 - -0.9
5,692,330 - -0.4
5,692,362 - -2.0
5,692,362 - -3.2
5,692,362 - -2.6
5,692,527 + -0.3
5,692,541 + +0.3
5,692,541 + -0.7
5,692,541 + -0.4
5,692,542 - -1.3
5,692,542 - -1.3

Or see this region's nucleotide sequence