Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4999

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4998 and PfGW456L13_4999 are separated by 137 nucleotidesPfGW456L13_4999 and PfGW456L13_5000 are separated by 2 nucleotides PfGW456L13_4998 - Outer membrane stress sensor protease DegS, at 5,575,933 to 5,577,093 _4998 PfGW456L13_4999 - Histidinol-phosphate aminotransferase (EC 2.6.1.9), at 5,577,231 to 5,578,283 _4999 PfGW456L13_5000 - Histidinol dehydrogenase (EC 1.1.1.23), at 5,578,286 to 5,579,623 _5000 Position (kb) 5577 5578 5579Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5576.281 kb on + strand, within PfGW456L13_4998at 5576.281 kb on + strand, within PfGW456L13_4998at 5576.281 kb on + strand, within PfGW456L13_4998at 5576.281 kb on + strand, within PfGW456L13_4998at 5576.566 kb on + strand, within PfGW456L13_4998at 5576.566 kb on + strand, within PfGW456L13_4998at 5576.566 kb on + strand, within PfGW456L13_4998at 5576.566 kb on + strand, within PfGW456L13_4998at 5576.566 kb on + strand, within PfGW456L13_4998at 5576.567 kb on - strand, within PfGW456L13_4998at 5576.567 kb on - strand, within PfGW456L13_4998at 5576.567 kb on - strand, within PfGW456L13_4998at 5577.157 kb on + strandat 5577.157 kb on + strandat 5577.158 kb on - strandat 5577.169 kb on + strandat 5577.169 kb on + strandat 5577.169 kb on + strandat 5577.170 kb on - strandat 5577.182 kb on + strandat 5577.183 kb on - strandat 5577.183 kb on - strandat 5577.232 kb on + strandat 5577.232 kb on + strandat 5577.233 kb on - strandat 5577.233 kb on - strandat 5577.502 kb on + strand, within PfGW456L13_4999at 5577.733 kb on + strand, within PfGW456L13_4999at 5577.733 kb on + strand, within PfGW456L13_4999at 5577.733 kb on + strand, within PfGW456L13_4999at 5577.733 kb on + strand, within PfGW456L13_4999at 5577.733 kb on + strand, within PfGW456L13_4999at 5577.734 kb on - strand, within PfGW456L13_4999at 5577.734 kb on - strand, within PfGW456L13_4999at 5577.734 kb on - strand, within PfGW456L13_4999at 5577.734 kb on - strand, within PfGW456L13_4999at 5577.734 kb on - strand, within PfGW456L13_4999at 5577.734 kb on - strand, within PfGW456L13_4999at 5577.734 kb on - strand, within PfGW456L13_4999at 5577.734 kb on - strand, within PfGW456L13_4999at 5577.862 kb on + strand, within PfGW456L13_4999at 5577.862 kb on + strand, within PfGW456L13_4999at 5577.863 kb on - strand, within PfGW456L13_4999at 5577.923 kb on - strand, within PfGW456L13_4999at 5577.934 kb on + strand, within PfGW456L13_4999at 5577.934 kb on + strand, within PfGW456L13_4999at 5577.935 kb on - strand, within PfGW456L13_4999at 5577.952 kb on + strand, within PfGW456L13_4999at 5577.952 kb on + strand, within PfGW456L13_4999at 5577.953 kb on - strand, within PfGW456L13_4999at 5577.953 kb on - strand, within PfGW456L13_4999at 5578.066 kb on + strand, within PfGW456L13_4999at 5578.066 kb on + strand, within PfGW456L13_4999at 5578.066 kb on + strand, within PfGW456L13_4999at 5578.067 kb on - strand, within PfGW456L13_4999at 5578.067 kb on - strand, within PfGW456L13_4999at 5578.067 kb on - strand, within PfGW456L13_4999at 5578.067 kb on - strand, within PfGW456L13_4999at 5578.070 kb on - strand, within PfGW456L13_4999at 5578.070 kb on - strand, within PfGW456L13_4999at 5578.197 kb on + strandat 5578.198 kb on - strandat 5578.240 kb on + strandat 5578.240 kb on + strandat 5578.240 kb on + strandat 5578.240 kb on + strandat 5578.240 kb on + strandat 5578.240 kb on + strandat 5578.240 kb on + strandat 5578.241 kb on - strandat 5578.241 kb on - strandat 5578.241 kb on - strandat 5578.241 kb on - strandat 5578.241 kb on - strandat 5578.241 kb on - strandat 5578.241 kb on - strandat 5578.241 kb on - strandat 5578.277 kb on + strandat 5578.452 kb on + strand, within PfGW456L13_5000at 5578.453 kb on - strand, within PfGW456L13_5000at 5578.453 kb on - strand, within PfGW456L13_5000at 5578.453 kb on - strand, within PfGW456L13_5000at 5578.453 kb on - strand, within PfGW456L13_5000at 5578.521 kb on + strand, within PfGW456L13_5000at 5578.522 kb on - strand, within PfGW456L13_5000at 5578.959 kb on + strand, within PfGW456L13_5000at 5578.959 kb on + strand, within PfGW456L13_5000at 5578.959 kb on + strand, within PfGW456L13_5000at 5578.959 kb on + strand, within PfGW456L13_5000at 5578.959 kb on + strand, within PfGW456L13_5000at 5578.959 kb on + strand, within PfGW456L13_5000at 5578.959 kb on + strand, within PfGW456L13_5000at 5578.959 kb on + strand, within PfGW456L13_5000at 5578.959 kb on + strand, within PfGW456L13_5000at 5578.959 kb on + strand, within PfGW456L13_5000at 5578.959 kb on + strand, within PfGW456L13_5000at 5578.959 kb on + strand, within PfGW456L13_5000at 5578.959 kb on + strand, within PfGW456L13_5000at 5578.960 kb on - strand, within PfGW456L13_5000at 5578.960 kb on - strand, within PfGW456L13_5000at 5578.960 kb on - strand, within PfGW456L13_5000at 5578.960 kb on - strand, within PfGW456L13_5000at 5578.960 kb on - strand, within PfGW456L13_5000at 5578.960 kb on - strand, within PfGW456L13_5000at 5578.960 kb on - strand, within PfGW456L13_5000at 5578.960 kb on - strand, within PfGW456L13_5000at 5578.960 kb on - strand, within PfGW456L13_5000at 5578.960 kb on - strand, within PfGW456L13_5000at 5578.960 kb on - strand, within PfGW456L13_5000at 5578.960 kb on - strand, within PfGW456L13_5000at 5578.960 kb on - strand, within PfGW456L13_5000at 5578.960 kb on - strand, within PfGW456L13_5000at 5578.984 kb on + strand, within PfGW456L13_5000at 5578.985 kb on - strand, within PfGW456L13_5000at 5579.213 kb on + strand, within PfGW456L13_5000at 5579.217 kb on + strand, within PfGW456L13_5000at 5579.217 kb on + strand, within PfGW456L13_5000at 5579.217 kb on + strand, within PfGW456L13_5000at 5579.217 kb on + strand, within PfGW456L13_5000at 5579.218 kb on - strand, within PfGW456L13_5000at 5579.218 kb on - strand, within PfGW456L13_5000at 5579.218 kb on - strand, within PfGW456L13_5000at 5579.281 kb on - strand, within PfGW456L13_5000

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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5,576,281 + PfGW456L13_4998 0.30 +2.0
5,576,281 + PfGW456L13_4998 0.30 -0.3
5,576,281 + PfGW456L13_4998 0.30 +0.4
5,576,281 + PfGW456L13_4998 0.30 -0.5
5,576,566 + PfGW456L13_4998 0.55 +0.3
5,576,566 + PfGW456L13_4998 0.55 +0.3
5,576,566 + PfGW456L13_4998 0.55 -0.0
5,576,566 + PfGW456L13_4998 0.55 -0.0
5,576,566 + PfGW456L13_4998 0.55 -0.2
5,576,567 - PfGW456L13_4998 0.55 -0.7
5,576,567 - PfGW456L13_4998 0.55 +2.2
5,576,567 - PfGW456L13_4998 0.55 -0.9
5,577,157 + -0.1
5,577,157 + +0.6
5,577,158 - +0.9
5,577,169 + +0.3
5,577,169 + -0.6
5,577,169 + -0.1
5,577,170 - +0.9
5,577,182 + -0.3
5,577,183 - -0.3
5,577,183 - -0.1
5,577,232 + -2.3
5,577,232 + -0.8
5,577,233 - -1.2
5,577,233 - -0.7
5,577,502 + PfGW456L13_4999 0.26 -3.1
5,577,733 + PfGW456L13_4999 0.48 -2.6
5,577,733 + PfGW456L13_4999 0.48 -2.1
5,577,733 + PfGW456L13_4999 0.48 -2.0
5,577,733 + PfGW456L13_4999 0.48 -4.3
5,577,733 + PfGW456L13_4999 0.48 -2.9
5,577,734 - PfGW456L13_4999 0.48 -2.7
5,577,734 - PfGW456L13_4999 0.48 -1.7
5,577,734 - PfGW456L13_4999 0.48 -2.7
5,577,734 - PfGW456L13_4999 0.48 -3.5
5,577,734 - PfGW456L13_4999 0.48 -4.1
5,577,734 - PfGW456L13_4999 0.48 -2.7
5,577,734 - PfGW456L13_4999 0.48 -3.0
5,577,734 - PfGW456L13_4999 0.48 -1.6
5,577,862 + PfGW456L13_4999 0.60 -3.1
5,577,862 + PfGW456L13_4999 0.60 -0.9
5,577,863 - PfGW456L13_4999 0.60 -1.0
5,577,923 - PfGW456L13_4999 0.66 -2.9
5,577,934 + PfGW456L13_4999 0.67 -0.9
5,577,934 + PfGW456L13_4999 0.67 -2.8
5,577,935 - PfGW456L13_4999 0.67 -1.8
5,577,952 + PfGW456L13_4999 0.68 -2.7
5,577,952 + PfGW456L13_4999 0.68 -2.8
5,577,953 - PfGW456L13_4999 0.69 -3.7
5,577,953 - PfGW456L13_4999 0.69 -3.5
5,578,066 + PfGW456L13_4999 0.79 -1.7
5,578,066 + PfGW456L13_4999 0.79 -2.8
5,578,066 + PfGW456L13_4999 0.79 -1.8
5,578,067 - PfGW456L13_4999 0.79 -3.6
5,578,067 - PfGW456L13_4999 0.79 -2.4
5,578,067 - PfGW456L13_4999 0.79 -1.3
5,578,067 - PfGW456L13_4999 0.79 -0.3
5,578,070 - PfGW456L13_4999 0.80 -3.7
5,578,070 - PfGW456L13_4999 0.80 -3.1
5,578,197 + -1.9
5,578,198 - -1.9
5,578,240 + -3.3
5,578,240 + -2.0
5,578,240 + -1.3
5,578,240 + -3.4
5,578,240 + -3.1
5,578,240 + -1.6
5,578,240 + -0.9
5,578,241 - -0.9
5,578,241 - -2.7
5,578,241 - -2.0
5,578,241 - -1.6
5,578,241 - -1.2
5,578,241 - -1.9
5,578,241 - -2.4
5,578,241 - -1.7
5,578,277 + -2.8
5,578,452 + PfGW456L13_5000 0.12 -1.3
5,578,453 - PfGW456L13_5000 0.12 -3.7
5,578,453 - PfGW456L13_5000 0.12 -3.0
5,578,453 - PfGW456L13_5000 0.12 -2.4
5,578,453 - PfGW456L13_5000 0.12 -1.3
5,578,521 + PfGW456L13_5000 0.18 -2.9
5,578,522 - PfGW456L13_5000 0.18 -3.5
5,578,959 + PfGW456L13_5000 0.50 -4.0
5,578,959 + PfGW456L13_5000 0.50 -3.4
5,578,959 + PfGW456L13_5000 0.50 -3.2
5,578,959 + PfGW456L13_5000 0.50 -2.7
5,578,959 + PfGW456L13_5000 0.50 -4.0
5,578,959 + PfGW456L13_5000 0.50 -1.8
5,578,959 + PfGW456L13_5000 0.50 -0.9
5,578,959 + PfGW456L13_5000 0.50 -1.9
5,578,959 + PfGW456L13_5000 0.50 -3.5
5,578,959 + PfGW456L13_5000 0.50 -3.5
5,578,959 + PfGW456L13_5000 0.50 -4.3
5,578,959 + PfGW456L13_5000 0.50 -2.2
5,578,959 + PfGW456L13_5000 0.50 -1.8
5,578,960 - PfGW456L13_5000 0.50 -1.7
5,578,960 - PfGW456L13_5000 0.50 -2.3
5,578,960 - PfGW456L13_5000 0.50 -2.9
5,578,960 - PfGW456L13_5000 0.50 -2.2
5,578,960 - PfGW456L13_5000 0.50 -2.2
5,578,960 - PfGW456L13_5000 0.50 -4.3
5,578,960 - PfGW456L13_5000 0.50 -3.8
5,578,960 - PfGW456L13_5000 0.50 -2.4
5,578,960 - PfGW456L13_5000 0.50 -3.1
5,578,960 - PfGW456L13_5000 0.50 -2.8
5,578,960 - PfGW456L13_5000 0.50 -2.7
5,578,960 - PfGW456L13_5000 0.50 -1.5
5,578,960 - PfGW456L13_5000 0.50 -3.4
5,578,960 - PfGW456L13_5000 0.50 -3.7
5,578,984 + PfGW456L13_5000 0.52 -1.3
5,578,985 - PfGW456L13_5000 0.52 -2.9
5,579,213 + PfGW456L13_5000 0.69 -3.0
5,579,217 + PfGW456L13_5000 0.70 -3.1
5,579,217 + PfGW456L13_5000 0.70 -4.0
5,579,217 + PfGW456L13_5000 0.70 -2.3
5,579,217 + PfGW456L13_5000 0.70 -3.2
5,579,218 - PfGW456L13_5000 0.70 -3.2
5,579,218 - PfGW456L13_5000 0.70 -3.7
5,579,218 - PfGW456L13_5000 0.70 -3.8
5,579,281 - PfGW456L13_5000 0.74 -3.7

Or see this region's nucleotide sequence