Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_494

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_493 and PfGW456L13_494 are separated by 136 nucleotidesPfGW456L13_494 and PfGW456L13_495 are separated by 184 nucleotides PfGW456L13_493 - response regulator, at 564,139 to 565,353 _493 PfGW456L13_494 - 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19), at 565,490 to 566,767 _494 PfGW456L13_495 - Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) (from data), at 566,952 to 568,394 _495 Position (kb) 565 566 567Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 564.504 kb on - strand, within PfGW456L13_493at 564.593 kb on + strand, within PfGW456L13_493at 564.593 kb on + strand, within PfGW456L13_493at 564.594 kb on - strand, within PfGW456L13_493at 565.002 kb on + strand, within PfGW456L13_493at 565.002 kb on + strand, within PfGW456L13_493at 565.002 kb on + strand, within PfGW456L13_493at 565.002 kb on + strand, within PfGW456L13_493at 565.022 kb on + strand, within PfGW456L13_493at 565.023 kb on - strand, within PfGW456L13_493at 565.141 kb on - strand, within PfGW456L13_493at 565.188 kb on - strand, within PfGW456L13_493at 565.258 kb on + strandat 565.258 kb on + strandat 565.258 kb on + strandat 565.258 kb on + strandat 565.259 kb on - strandat 565.259 kb on - strandat 565.259 kb on - strandat 565.259 kb on - strandat 565.353 kb on + strandat 565.353 kb on + strandat 565.353 kb on + strandat 565.353 kb on + strandat 565.353 kb on + strandat 565.354 kb on - strandat 565.354 kb on - strandat 565.354 kb on - strandat 565.411 kb on + strandat 565.587 kb on + strandat 565.740 kb on + strand, within PfGW456L13_494at 565.741 kb on - strand, within PfGW456L13_494at 565.872 kb on + strand, within PfGW456L13_494at 565.872 kb on + strand, within PfGW456L13_494at 565.873 kb on - strand, within PfGW456L13_494at 565.873 kb on - strand, within PfGW456L13_494at 565.873 kb on - strand, within PfGW456L13_494at 565.911 kb on + strand, within PfGW456L13_494at 565.911 kb on + strand, within PfGW456L13_494at 565.911 kb on + strand, within PfGW456L13_494at 565.911 kb on + strand, within PfGW456L13_494at 565.912 kb on - strand, within PfGW456L13_494at 565.912 kb on - strand, within PfGW456L13_494at 565.912 kb on - strand, within PfGW456L13_494at 565.912 kb on - strand, within PfGW456L13_494at 566.042 kb on + strand, within PfGW456L13_494at 566.042 kb on + strand, within PfGW456L13_494at 566.043 kb on - strand, within PfGW456L13_494at 566.043 kb on - strand, within PfGW456L13_494at 566.043 kb on - strand, within PfGW456L13_494at 566.121 kb on + strand, within PfGW456L13_494at 566.121 kb on + strand, within PfGW456L13_494at 566.121 kb on + strand, within PfGW456L13_494at 566.121 kb on + strand, within PfGW456L13_494at 566.121 kb on + strand, within PfGW456L13_494at 566.121 kb on + strand, within PfGW456L13_494at 566.121 kb on + strand, within PfGW456L13_494at 566.121 kb on + strand, within PfGW456L13_494at 566.121 kb on + strand, within PfGW456L13_494at 566.122 kb on - strand, within PfGW456L13_494at 566.122 kb on - strand, within PfGW456L13_494at 566.122 kb on - strand, within PfGW456L13_494at 566.122 kb on - strand, within PfGW456L13_494at 566.122 kb on - strand, within PfGW456L13_494at 566.122 kb on - strand, within PfGW456L13_494at 566.122 kb on - strand, within PfGW456L13_494at 566.122 kb on - strand, within PfGW456L13_494at 566.254 kb on - strand, within PfGW456L13_494at 566.255 kb on + strand, within PfGW456L13_494at 566.255 kb on + strand, within PfGW456L13_494at 566.255 kb on + strand, within PfGW456L13_494at 566.302 kb on - strand, within PfGW456L13_494at 566.504 kb on + strand, within PfGW456L13_494at 566.504 kb on + strand, within PfGW456L13_494at 566.504 kb on + strand, within PfGW456L13_494at 566.504 kb on + strand, within PfGW456L13_494at 566.505 kb on - strand, within PfGW456L13_494at 566.505 kb on - strand, within PfGW456L13_494at 566.505 kb on - strand, within PfGW456L13_494at 566.508 kb on + strand, within PfGW456L13_494at 566.508 kb on + strand, within PfGW456L13_494at 566.508 kb on + strand, within PfGW456L13_494at 566.509 kb on - strand, within PfGW456L13_494at 566.509 kb on - strand, within PfGW456L13_494at 566.509 kb on - strand, within PfGW456L13_494at 566.517 kb on + strand, within PfGW456L13_494at 566.517 kb on + strand, within PfGW456L13_494at 566.525 kb on + strand, within PfGW456L13_494at 566.767 kb on + strandat 566.767 kb on + strandat 566.768 kb on + strandat 566.768 kb on - strandat 566.768 kb on - strandat 566.768 kb on - strandat 566.768 kb on - strandat 566.768 kb on - strandat 566.768 kb on - strandat 566.768 kb on - strandat 566.768 kb on - strandat 566.811 kb on - strandat 566.954 kb on - strandat 566.971 kb on + strandat 566.971 kb on + strandat 566.971 kb on + strandat 566.971 kb on + strandat 566.971 kb on + strandat 566.972 kb on - strandat 566.972 kb on - strandat 566.972 kb on - strandat 566.972 kb on - strandat 566.986 kb on + strandat 566.986 kb on + strandat 566.986 kb on + strandat 567.001 kb on + strandat 567.001 kb on + strandat 567.145 kb on + strand, within PfGW456L13_495at 567.145 kb on + strand, within PfGW456L13_495at 567.145 kb on + strand, within PfGW456L13_495at 567.145 kb on + strand, within PfGW456L13_495at 567.145 kb on + strand, within PfGW456L13_495at 567.145 kb on + strand, within PfGW456L13_495at 567.145 kb on + strand, within PfGW456L13_495at 567.145 kb on + strand, within PfGW456L13_495at 567.145 kb on + strand, within PfGW456L13_495at 567.145 kb on + strand, within PfGW456L13_495at 567.146 kb on - strand, within PfGW456L13_495at 567.146 kb on - strand, within PfGW456L13_495at 567.146 kb on - strand, within PfGW456L13_495at 567.146 kb on - strand, within PfGW456L13_495at 567.146 kb on - strand, within PfGW456L13_495at 567.146 kb on - strand, within PfGW456L13_495at 567.146 kb on - strand, within PfGW456L13_495at 567.146 kb on - strand, within PfGW456L13_495at 567.146 kb on - strand, within PfGW456L13_495at 567.146 kb on - strand, within PfGW456L13_495at 567.146 kb on - strand, within PfGW456L13_495at 567.146 kb on - strand, within PfGW456L13_495at 567.146 kb on - strand, within PfGW456L13_495at 567.146 kb on - strand, within PfGW456L13_495at 567.146 kb on - strand, within PfGW456L13_495at 567.146 kb on - strand, within PfGW456L13_495at 567.146 kb on - strand, within PfGW456L13_495at 567.146 kb on - strand, within PfGW456L13_495at 567.151 kb on + strand, within PfGW456L13_495at 567.151 kb on + strand, within PfGW456L13_495at 567.152 kb on - strand, within PfGW456L13_495at 567.490 kb on + strand, within PfGW456L13_495at 567.490 kb on + strand, within PfGW456L13_495at 567.491 kb on - strand, within PfGW456L13_495at 567.508 kb on + strand, within PfGW456L13_495at 567.508 kb on + strand, within PfGW456L13_495at 567.508 kb on + strand, within PfGW456L13_495at 567.508 kb on + strand, within PfGW456L13_495at 567.508 kb on + strand, within PfGW456L13_495at 567.509 kb on - strand, within PfGW456L13_495at 567.509 kb on - strand, within PfGW456L13_495at 567.550 kb on + strand, within PfGW456L13_495at 567.550 kb on + strand, within PfGW456L13_495at 567.551 kb on - strand, within PfGW456L13_495

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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564,504 - PfGW456L13_493 0.30 -0.3
564,593 + PfGW456L13_493 0.37 +1.0
564,593 + PfGW456L13_493 0.37 -0.2
564,594 - PfGW456L13_493 0.37 +0.1
565,002 + PfGW456L13_493 0.71 +1.0
565,002 + PfGW456L13_493 0.71 -1.1
565,002 + PfGW456L13_493 0.71 -1.2
565,002 + PfGW456L13_493 0.71 -0.9
565,022 + PfGW456L13_493 0.73 +1.8
565,023 - PfGW456L13_493 0.73 +0.4
565,141 - PfGW456L13_493 0.82 +0.2
565,188 - PfGW456L13_493 0.86 -0.7
565,258 + -0.9
565,258 + -0.7
565,258 + -0.5
565,258 + +0.2
565,259 - -0.2
565,259 - -0.4
565,259 - +0.4
565,259 - +2.0
565,353 + +0.0
565,353 + +1.2
565,353 + +0.5
565,353 + -1.3
565,353 + -0.7
565,354 - -1.2
565,354 - +1.2
565,354 - -0.7
565,411 + -1.6
565,587 + -1.9
565,740 + PfGW456L13_494 0.20 -2.5
565,741 - PfGW456L13_494 0.20 -2.4
565,872 + PfGW456L13_494 0.30 -1.7
565,872 + PfGW456L13_494 0.30 -2.3
565,873 - PfGW456L13_494 0.30 -1.7
565,873 - PfGW456L13_494 0.30 -1.1
565,873 - PfGW456L13_494 0.30 -0.0
565,911 + PfGW456L13_494 0.33 -1.0
565,911 + PfGW456L13_494 0.33 -0.6
565,911 + PfGW456L13_494 0.33 -1.3
565,911 + PfGW456L13_494 0.33 -1.7
565,912 - PfGW456L13_494 0.33 -2.8
565,912 - PfGW456L13_494 0.33 -0.8
565,912 - PfGW456L13_494 0.33 -1.1
565,912 - PfGW456L13_494 0.33 -1.4
566,042 + PfGW456L13_494 0.43 -3.5
566,042 + PfGW456L13_494 0.43 -0.6
566,043 - PfGW456L13_494 0.43 -3.3
566,043 - PfGW456L13_494 0.43 -1.0
566,043 - PfGW456L13_494 0.43 -0.9
566,121 + PfGW456L13_494 0.49 -1.0
566,121 + PfGW456L13_494 0.49 -0.4
566,121 + PfGW456L13_494 0.49 -3.2
566,121 + PfGW456L13_494 0.49 -3.0
566,121 + PfGW456L13_494 0.49 +1.4
566,121 + PfGW456L13_494 0.49 -1.2
566,121 + PfGW456L13_494 0.49 -1.2
566,121 + PfGW456L13_494 0.49 -2.8
566,121 + PfGW456L13_494 0.49 -1.4
566,122 - PfGW456L13_494 0.49 -0.5
566,122 - PfGW456L13_494 0.49 -0.5
566,122 - PfGW456L13_494 0.49 -2.3
566,122 - PfGW456L13_494 0.49 -1.7
566,122 - PfGW456L13_494 0.49 -2.2
566,122 - PfGW456L13_494 0.49 -1.2
566,122 - PfGW456L13_494 0.49 -3.9
566,122 - PfGW456L13_494 0.49 -0.2
566,254 - PfGW456L13_494 0.60 -1.9
566,255 + PfGW456L13_494 0.60 +1.2
566,255 + PfGW456L13_494 0.60 -0.6
566,255 + PfGW456L13_494 0.60 -2.8
566,302 - PfGW456L13_494 0.64 -0.7
566,504 + PfGW456L13_494 0.79 +0.0
566,504 + PfGW456L13_494 0.79 -1.6
566,504 + PfGW456L13_494 0.79 -1.1
566,504 + PfGW456L13_494 0.79 -1.1
566,505 - PfGW456L13_494 0.79 +0.1
566,505 - PfGW456L13_494 0.79 -0.2
566,505 - PfGW456L13_494 0.79 -0.7
566,508 + PfGW456L13_494 0.80 -1.7
566,508 + PfGW456L13_494 0.80 -2.8
566,508 + PfGW456L13_494 0.80 -1.2
566,509 - PfGW456L13_494 0.80 -2.1
566,509 - PfGW456L13_494 0.80 -2.0
566,509 - PfGW456L13_494 0.80 -2.4
566,517 + PfGW456L13_494 0.80 -1.5
566,517 + PfGW456L13_494 0.80 -0.0
566,525 + PfGW456L13_494 0.81 -0.7
566,767 + +0.3
566,767 + -1.3
566,768 + +0.9
566,768 - -1.0
566,768 - -3.0
566,768 - -0.2
566,768 - +0.1
566,768 - -0.5
566,768 - -0.9
566,768 - -1.4
566,768 - -0.8
566,811 - -0.5
566,954 - -0.6
566,971 + -1.1
566,971 + -1.5
566,971 + -0.5
566,971 + -0.9
566,971 + -1.1
566,972 - -0.9
566,972 - -1.5
566,972 - +2.2
566,972 - -0.8
566,986 + -1.3
566,986 + -0.9
566,986 + -1.3
567,001 + -3.1
567,001 + -0.3
567,145 + PfGW456L13_495 0.13 +0.1
567,145 + PfGW456L13_495 0.13 +0.2
567,145 + PfGW456L13_495 0.13 -0.6
567,145 + PfGW456L13_495 0.13 +0.5
567,145 + PfGW456L13_495 0.13 -1.1
567,145 + PfGW456L13_495 0.13 -1.5
567,145 + PfGW456L13_495 0.13 -1.7
567,145 + PfGW456L13_495 0.13 -0.5
567,145 + PfGW456L13_495 0.13 +1.3
567,145 + PfGW456L13_495 0.13 -0.5
567,146 - PfGW456L13_495 0.13 -1.1
567,146 - PfGW456L13_495 0.13 -2.3
567,146 - PfGW456L13_495 0.13 -0.3
567,146 - PfGW456L13_495 0.13 -1.4
567,146 - PfGW456L13_495 0.13 -1.5
567,146 - PfGW456L13_495 0.13 -0.4
567,146 - PfGW456L13_495 0.13 -0.5
567,146 - PfGW456L13_495 0.13 -2.2
567,146 - PfGW456L13_495 0.13 +0.1
567,146 - PfGW456L13_495 0.13 -0.6
567,146 - PfGW456L13_495 0.13 -1.2
567,146 - PfGW456L13_495 0.13 -1.7
567,146 - PfGW456L13_495 0.13 -0.4
567,146 - PfGW456L13_495 0.13 -2.9
567,146 - PfGW456L13_495 0.13 -0.6
567,146 - PfGW456L13_495 0.13 +1.2
567,146 - PfGW456L13_495 0.13 -1.1
567,146 - PfGW456L13_495 0.13 -2.6
567,151 + PfGW456L13_495 0.14 -1.5
567,151 + PfGW456L13_495 0.14 -0.2
567,152 - PfGW456L13_495 0.14 -1.6
567,490 + PfGW456L13_495 0.37 -1.3
567,490 + PfGW456L13_495 0.37 +0.2
567,491 - PfGW456L13_495 0.37 -0.4
567,508 + PfGW456L13_495 0.39 -1.7
567,508 + PfGW456L13_495 0.39 +0.6
567,508 + PfGW456L13_495 0.39 -1.5
567,508 + PfGW456L13_495 0.39 -0.6
567,508 + PfGW456L13_495 0.39 -2.8
567,509 - PfGW456L13_495 0.39 +0.1
567,509 - PfGW456L13_495 0.39 -1.5
567,550 + PfGW456L13_495 0.41 +0.1
567,550 + PfGW456L13_495 0.41 -0.9
567,551 - PfGW456L13_495 0.42 -0.4

Or see this region's nucleotide sequence