Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4705

Experiment: D-Serine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_4703 and PfGW456L13_4704 overlap by 1 nucleotidesPfGW456L13_4704 and PfGW456L13_4705 are separated by 13 nucleotidesPfGW456L13_4705 and PfGW456L13_4706 overlap by 4 nucleotidesPfGW456L13_4706 and PfGW456L13_4707 are separated by 215 nucleotides PfGW456L13_4703 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 5,242,955 to 5,243,761 _4703 PfGW456L13_4704 - Undecaprenyl diphosphate synthase (EC 2.5.1.31), at 5,243,761 to 5,244,516 _4704 PfGW456L13_4705 - Ribosome recycling factor, at 5,244,530 to 5,245,087 _4705 PfGW456L13_4706 - Uridine monophosphate kinase (EC 2.7.4.22), at 5,245,084 to 5,245,827 _4706 PfGW456L13_4707 - Translation elongation factor Ts, at 5,246,043 to 5,246,906 _4707 Position (kb) 5244 5245 5246Strain fitness (log2 ratio) -2 -1 0 1at 5244.534 kb on - strandat 5245.854 kb on - strandat 5245.881 kb on - strandat 5245.881 kb on - strandat 5245.899 kb on - strandat 5245.939 kb on - strandat 5246.045 kb on - strandat 5246.045 kb on - strandat 5246.045 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
remove
5,244,534 - +1.0
5,245,854 - -2.0
5,245,881 - -1.9
5,245,881 - -0.8
5,245,899 - -0.9
5,245,939 - -1.1
5,246,045 - -0.6
5,246,045 - -2.3
5,246,045 - -1.4

Or see this region's nucleotide sequence