Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4607

Experiment: D-Serine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_4606 and PfGW456L13_4607 are separated by 122 nucleotidesPfGW456L13_4607 and PfGW456L13_4608 overlap by 18 nucleotidesPfGW456L13_4608 and PfGW456L13_4609 overlap by 4 nucleotides PfGW456L13_4606 - High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1), at 5,143,627 to 5,144,754 _4606 PfGW456L13_4607 - hypothetical protein, at 5,144,877 to 5,145,005 _4607 PfGW456L13_4608 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 5,144,988 to 5,145,911 _4608 PfGW456L13_4609 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 5,145,908 to 5,147,164 _4609 Position (kb) 5144 5145 5146Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5143.972 kb on + strand, within PfGW456L13_4606at 5143.972 kb on + strand, within PfGW456L13_4606at 5143.972 kb on + strand, within PfGW456L13_4606at 5143.973 kb on - strand, within PfGW456L13_4606at 5143.973 kb on - strand, within PfGW456L13_4606at 5143.973 kb on - strand, within PfGW456L13_4606at 5143.973 kb on - strand, within PfGW456L13_4606at 5144.098 kb on + strand, within PfGW456L13_4606at 5144.098 kb on + strand, within PfGW456L13_4606at 5144.098 kb on + strand, within PfGW456L13_4606at 5144.098 kb on + strand, within PfGW456L13_4606at 5144.098 kb on + strand, within PfGW456L13_4606at 5144.098 kb on + strand, within PfGW456L13_4606at 5144.098 kb on + strand, within PfGW456L13_4606at 5144.098 kb on + strand, within PfGW456L13_4606at 5144.098 kb on + strand, within PfGW456L13_4606at 5144.099 kb on - strand, within PfGW456L13_4606at 5144.099 kb on - strand, within PfGW456L13_4606at 5144.099 kb on - strand, within PfGW456L13_4606at 5144.099 kb on - strand, within PfGW456L13_4606at 5144.099 kb on - strand, within PfGW456L13_4606at 5144.099 kb on - strand, within PfGW456L13_4606at 5144.099 kb on - strand, within PfGW456L13_4606at 5144.099 kb on - strand, within PfGW456L13_4606at 5144.099 kb on - strand, within PfGW456L13_4606at 5144.099 kb on - strand, within PfGW456L13_4606at 5144.099 kb on - strand, within PfGW456L13_4606at 5144.099 kb on - strand, within PfGW456L13_4606at 5144.099 kb on - strand, within PfGW456L13_4606at 5144.099 kb on - strand, within PfGW456L13_4606at 5144.099 kb on - strand, within PfGW456L13_4606at 5144.099 kb on - strand, within PfGW456L13_4606at 5144.099 kb on - strand, within PfGW456L13_4606at 5144.099 kb on - strand, within PfGW456L13_4606at 5144.099 kb on - strand, within PfGW456L13_4606at 5144.099 kb on - strand, within PfGW456L13_4606at 5144.114 kb on + strand, within PfGW456L13_4606at 5144.114 kb on + strand, within PfGW456L13_4606at 5144.155 kb on + strand, within PfGW456L13_4606at 5144.156 kb on - strand, within PfGW456L13_4606at 5144.156 kb on - strand, within PfGW456L13_4606at 5144.302 kb on + strand, within PfGW456L13_4606at 5144.302 kb on + strand, within PfGW456L13_4606at 5144.303 kb on - strand, within PfGW456L13_4606at 5144.549 kb on - strand, within PfGW456L13_4606at 5144.650 kb on - strandat 5144.707 kb on + strandat 5144.707 kb on + strandat 5144.707 kb on + strandat 5144.708 kb on - strandat 5144.708 kb on - strandat 5144.753 kb on - strandat 5144.779 kb on - strandat 5144.817 kb on + strandat 5144.817 kb on + strandat 5144.817 kb on + strandat 5144.817 kb on + strandat 5144.817 kb on + strandat 5144.817 kb on + strandat 5144.817 kb on + strandat 5144.818 kb on - strandat 5144.818 kb on - strandat 5144.818 kb on - strandat 5144.818 kb on - strandat 5144.818 kb on - strandat 5144.818 kb on - strandat 5144.818 kb on - strandat 5144.818 kb on - strandat 5144.965 kb on - strand, within PfGW456L13_4607at 5144.986 kb on + strand, within PfGW456L13_4607at 5145.000 kb on + strandat 5145.000 kb on + strandat 5145.000 kb on + strandat 5145.000 kb on + strandat 5145.001 kb on - strandat 5145.001 kb on - strandat 5145.001 kb on - strandat 5145.001 kb on - strandat 5145.001 kb on - strandat 5145.048 kb on + strandat 5145.048 kb on + strandat 5145.048 kb on + strandat 5145.048 kb on + strandat 5145.048 kb on + strandat 5145.048 kb on + strandat 5145.048 kb on + strandat 5145.048 kb on + strandat 5145.048 kb on + strandat 5145.048 kb on + strandat 5145.048 kb on + strandat 5145.049 kb on - strandat 5145.049 kb on - strandat 5145.049 kb on - strandat 5145.049 kb on - strandat 5145.049 kb on - strandat 5145.049 kb on - strandat 5145.049 kb on - strandat 5145.071 kb on + strandat 5145.071 kb on + strandat 5145.071 kb on + strandat 5145.072 kb on - strandat 5145.072 kb on - strandat 5145.072 kb on - strandat 5145.081 kb on + strand, within PfGW456L13_4608at 5145.123 kb on + strand, within PfGW456L13_4608at 5145.123 kb on + strand, within PfGW456L13_4608at 5145.123 kb on + strand, within PfGW456L13_4608at 5145.123 kb on + strand, within PfGW456L13_4608at 5145.123 kb on + strand, within PfGW456L13_4608at 5145.123 kb on + strand, within PfGW456L13_4608at 5145.123 kb on + strand, within PfGW456L13_4608at 5145.123 kb on + strand, within PfGW456L13_4608at 5145.124 kb on - strand, within PfGW456L13_4608at 5145.124 kb on - strand, within PfGW456L13_4608at 5145.124 kb on - strand, within PfGW456L13_4608at 5145.124 kb on - strand, within PfGW456L13_4608at 5145.124 kb on - strand, within PfGW456L13_4608at 5145.124 kb on - strand, within PfGW456L13_4608at 5145.124 kb on - strand, within PfGW456L13_4608at 5145.124 kb on - strand, within PfGW456L13_4608at 5145.138 kb on + strand, within PfGW456L13_4608at 5145.138 kb on + strand, within PfGW456L13_4608at 5145.139 kb on - strand, within PfGW456L13_4608at 5145.139 kb on - strand, within PfGW456L13_4608at 5145.139 kb on - strand, within PfGW456L13_4608at 5145.139 kb on - strand, within PfGW456L13_4608at 5145.139 kb on - strand, within PfGW456L13_4608at 5145.139 kb on - strand, within PfGW456L13_4608at 5145.232 kb on + strand, within PfGW456L13_4608at 5145.232 kb on + strand, within PfGW456L13_4608at 5145.233 kb on - strand, within PfGW456L13_4608at 5145.233 kb on - strand, within PfGW456L13_4608at 5145.233 kb on - strand, within PfGW456L13_4608at 5145.243 kb on + strand, within PfGW456L13_4608at 5145.250 kb on - strand, within PfGW456L13_4608at 5145.447 kb on + strand, within PfGW456L13_4608at 5145.448 kb on - strand, within PfGW456L13_4608at 5145.448 kb on - strand, within PfGW456L13_4608at 5145.448 kb on - strand, within PfGW456L13_4608at 5145.448 kb on - strand, within PfGW456L13_4608at 5145.579 kb on - strand, within PfGW456L13_4608at 5145.663 kb on + strand, within PfGW456L13_4608at 5145.664 kb on - strand, within PfGW456L13_4608at 5145.772 kb on + strand, within PfGW456L13_4608at 5145.803 kb on + strand, within PfGW456L13_4608at 5145.819 kb on + strandat 5145.820 kb on - strandat 5145.820 kb on - strandat 5145.820 kb on - strandat 5145.907 kb on + strandat 5145.907 kb on + strandat 5145.907 kb on + strandat 5145.908 kb on - strandat 5145.908 kb on - strandat 5145.908 kb on - strandat 5145.908 kb on - strandat 5145.908 kb on - strandat 5145.913 kb on + strandat 5145.913 kb on + strandat 5145.913 kb on + strandat 5145.914 kb on - strandat 5145.914 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
remove
5,143,972 + PfGW456L13_4606 0.31 -0.2
5,143,972 + PfGW456L13_4606 0.31 +0.3
5,143,972 + PfGW456L13_4606 0.31 +3.1
5,143,973 - PfGW456L13_4606 0.31 -1.5
5,143,973 - PfGW456L13_4606 0.31 +1.2
5,143,973 - PfGW456L13_4606 0.31 +0.3
5,143,973 - PfGW456L13_4606 0.31 -1.0
5,144,098 + PfGW456L13_4606 0.42 -0.7
5,144,098 + PfGW456L13_4606 0.42 -0.4
5,144,098 + PfGW456L13_4606 0.42 +0.0
5,144,098 + PfGW456L13_4606 0.42 +0.4
5,144,098 + PfGW456L13_4606 0.42 +0.1
5,144,098 + PfGW456L13_4606 0.42 +0.0
5,144,098 + PfGW456L13_4606 0.42 +0.6
5,144,098 + PfGW456L13_4606 0.42 -2.2
5,144,098 + PfGW456L13_4606 0.42 +1.5
5,144,099 - PfGW456L13_4606 0.42 +0.4
5,144,099 - PfGW456L13_4606 0.42 -1.7
5,144,099 - PfGW456L13_4606 0.42 -0.1
5,144,099 - PfGW456L13_4606 0.42 -0.2
5,144,099 - PfGW456L13_4606 0.42 +0.5
5,144,099 - PfGW456L13_4606 0.42 +1.0
5,144,099 - PfGW456L13_4606 0.42 +0.0
5,144,099 - PfGW456L13_4606 0.42 +0.4
5,144,099 - PfGW456L13_4606 0.42 -0.3
5,144,099 - PfGW456L13_4606 0.42 +0.9
5,144,099 - PfGW456L13_4606 0.42 +1.0
5,144,099 - PfGW456L13_4606 0.42 +0.3
5,144,099 - PfGW456L13_4606 0.42 -0.1
5,144,099 - PfGW456L13_4606 0.42 -0.6
5,144,099 - PfGW456L13_4606 0.42 +0.7
5,144,099 - PfGW456L13_4606 0.42 -2.0
5,144,099 - PfGW456L13_4606 0.42 +0.2
5,144,099 - PfGW456L13_4606 0.42 +0.4
5,144,099 - PfGW456L13_4606 0.42 +2.1
5,144,099 - PfGW456L13_4606 0.42 +1.9
5,144,114 + PfGW456L13_4606 0.43 -0.5
5,144,114 + PfGW456L13_4606 0.43 +0.5
5,144,155 + PfGW456L13_4606 0.47 -1.5
5,144,156 - PfGW456L13_4606 0.47 +2.1
5,144,156 - PfGW456L13_4606 0.47 +0.3
5,144,302 + PfGW456L13_4606 0.60 -0.4
5,144,302 + PfGW456L13_4606 0.60 -0.0
5,144,303 - PfGW456L13_4606 0.60 -1.0
5,144,549 - PfGW456L13_4606 0.82 -0.1
5,144,650 - -1.8
5,144,707 + +0.5
5,144,707 + -3.1
5,144,707 + +1.1
5,144,708 - -2.5
5,144,708 - +1.2
5,144,753 - +1.0
5,144,779 - +0.7
5,144,817 + -0.3
5,144,817 + -0.2
5,144,817 + -0.1
5,144,817 + -1.7
5,144,817 + -0.4
5,144,817 + -0.5
5,144,817 + -1.3
5,144,818 - -0.3
5,144,818 - +0.6
5,144,818 - -0.6
5,144,818 - +0.5
5,144,818 - -0.6
5,144,818 - +0.2
5,144,818 - -0.7
5,144,818 - -0.2
5,144,965 - PfGW456L13_4607 0.68 +0.2
5,144,986 + PfGW456L13_4607 0.84 +2.6
5,145,000 + +1.1
5,145,000 + -0.5
5,145,000 + -2.0
5,145,000 + +0.5
5,145,001 - +0.5
5,145,001 - +0.5
5,145,001 - +0.2
5,145,001 - -2.5
5,145,001 - -1.7
5,145,048 + +0.0
5,145,048 + +0.1
5,145,048 + -0.3
5,145,048 + +0.2
5,145,048 + +0.1
5,145,048 + +0.5
5,145,048 + -0.5
5,145,048 + +0.0
5,145,048 + -1.2
5,145,048 + +0.4
5,145,048 + +0.1
5,145,049 - +0.3
5,145,049 - +0.8
5,145,049 - -1.1
5,145,049 - +0.3
5,145,049 - +1.0
5,145,049 - +0.4
5,145,049 - -0.1
5,145,071 + +1.0
5,145,071 + +0.2
5,145,071 + +1.3
5,145,072 - -0.1
5,145,072 - -1.2
5,145,072 - -0.7
5,145,081 + PfGW456L13_4608 0.10 -0.4
5,145,123 + PfGW456L13_4608 0.15 -0.4
5,145,123 + PfGW456L13_4608 0.15 +0.3
5,145,123 + PfGW456L13_4608 0.15 +0.8
5,145,123 + PfGW456L13_4608 0.15 -2.0
5,145,123 + PfGW456L13_4608 0.15 +0.8
5,145,123 + PfGW456L13_4608 0.15 +0.3
5,145,123 + PfGW456L13_4608 0.15 +0.5
5,145,123 + PfGW456L13_4608 0.15 +0.3
5,145,124 - PfGW456L13_4608 0.15 +0.6
5,145,124 - PfGW456L13_4608 0.15 +0.2
5,145,124 - PfGW456L13_4608 0.15 +0.5
5,145,124 - PfGW456L13_4608 0.15 +0.8
5,145,124 - PfGW456L13_4608 0.15 +0.3
5,145,124 - PfGW456L13_4608 0.15 -1.6
5,145,124 - PfGW456L13_4608 0.15 +0.0
5,145,124 - PfGW456L13_4608 0.15 -2.2
5,145,138 + PfGW456L13_4608 0.16 -0.7
5,145,138 + PfGW456L13_4608 0.16 +0.6
5,145,139 - PfGW456L13_4608 0.16 -1.8
5,145,139 - PfGW456L13_4608 0.16 +0.6
5,145,139 - PfGW456L13_4608 0.16 +0.0
5,145,139 - PfGW456L13_4608 0.16 +0.1
5,145,139 - PfGW456L13_4608 0.16 +0.1
5,145,139 - PfGW456L13_4608 0.16 -1.7
5,145,232 + PfGW456L13_4608 0.26 +0.1
5,145,232 + PfGW456L13_4608 0.26 -1.0
5,145,233 - PfGW456L13_4608 0.27 -0.2
5,145,233 - PfGW456L13_4608 0.27 -0.1
5,145,233 - PfGW456L13_4608 0.27 +0.8
5,145,243 + PfGW456L13_4608 0.28 -0.1
5,145,250 - PfGW456L13_4608 0.28 -0.3
5,145,447 + PfGW456L13_4608 0.50 +0.6
5,145,448 - PfGW456L13_4608 0.50 -1.3
5,145,448 - PfGW456L13_4608 0.50 -0.3
5,145,448 - PfGW456L13_4608 0.50 +0.1
5,145,448 - PfGW456L13_4608 0.50 +0.4
5,145,579 - PfGW456L13_4608 0.64 -1.2
5,145,663 + PfGW456L13_4608 0.73 -0.6
5,145,664 - PfGW456L13_4608 0.73 +0.9
5,145,772 + PfGW456L13_4608 0.85 +0.4
5,145,803 + PfGW456L13_4608 0.88 +1.9
5,145,819 + -0.8
5,145,820 - +0.9
5,145,820 - -0.4
5,145,820 - +0.5
5,145,907 + -0.5
5,145,907 + -0.4
5,145,907 + +0.4
5,145,908 - +0.7
5,145,908 - -1.9
5,145,908 - +0.3
5,145,908 - -0.4
5,145,908 - +1.1
5,145,913 + -0.5
5,145,913 + +0.4
5,145,913 + -0.3
5,145,914 - -0.7
5,145,914 - +1.2

Or see this region's nucleotide sequence