Experiment: D-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4606 and PfGW456L13_4607 are separated by 122 nucleotides PfGW456L13_4607 and PfGW456L13_4608 overlap by 18 nucleotides PfGW456L13_4608 and PfGW456L13_4609 overlap by 4 nucleotides
PfGW456L13_4606 - High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1), at 5,143,627 to 5,144,754
_4606
PfGW456L13_4607 - hypothetical protein, at 5,144,877 to 5,145,005
_4607
PfGW456L13_4608 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 5,144,988 to 5,145,911
_4608
PfGW456L13_4609 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 5,145,908 to 5,147,164
_4609
Position (kb)
5144
5145
5146 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 5143.972 kb on + strand, within PfGW456L13_4606 at 5143.972 kb on + strand, within PfGW456L13_4606 at 5143.972 kb on + strand, within PfGW456L13_4606 at 5143.973 kb on - strand, within PfGW456L13_4606 at 5143.973 kb on - strand, within PfGW456L13_4606 at 5143.973 kb on - strand, within PfGW456L13_4606 at 5143.973 kb on - strand, within PfGW456L13_4606 at 5144.098 kb on + strand, within PfGW456L13_4606 at 5144.098 kb on + strand, within PfGW456L13_4606 at 5144.098 kb on + strand, within PfGW456L13_4606 at 5144.098 kb on + strand, within PfGW456L13_4606 at 5144.098 kb on + strand, within PfGW456L13_4606 at 5144.098 kb on + strand, within PfGW456L13_4606 at 5144.098 kb on + strand, within PfGW456L13_4606 at 5144.098 kb on + strand, within PfGW456L13_4606 at 5144.098 kb on + strand, within PfGW456L13_4606 at 5144.099 kb on - strand, within PfGW456L13_4606 at 5144.099 kb on - strand, within PfGW456L13_4606 at 5144.099 kb on - strand, within PfGW456L13_4606 at 5144.099 kb on - strand, within PfGW456L13_4606 at 5144.099 kb on - strand, within PfGW456L13_4606 at 5144.099 kb on - strand, within PfGW456L13_4606 at 5144.099 kb on - strand, within PfGW456L13_4606 at 5144.099 kb on - strand, within PfGW456L13_4606 at 5144.099 kb on - strand, within PfGW456L13_4606 at 5144.099 kb on - strand, within PfGW456L13_4606 at 5144.099 kb on - strand, within PfGW456L13_4606 at 5144.099 kb on - strand, within PfGW456L13_4606 at 5144.099 kb on - strand, within PfGW456L13_4606 at 5144.099 kb on - strand, within PfGW456L13_4606 at 5144.099 kb on - strand, within PfGW456L13_4606 at 5144.099 kb on - strand, within PfGW456L13_4606 at 5144.099 kb on - strand, within PfGW456L13_4606 at 5144.099 kb on - strand, within PfGW456L13_4606 at 5144.099 kb on - strand, within PfGW456L13_4606 at 5144.099 kb on - strand, within PfGW456L13_4606 at 5144.114 kb on + strand, within PfGW456L13_4606 at 5144.114 kb on + strand, within PfGW456L13_4606 at 5144.155 kb on + strand, within PfGW456L13_4606 at 5144.156 kb on - strand, within PfGW456L13_4606 at 5144.156 kb on - strand, within PfGW456L13_4606 at 5144.302 kb on + strand, within PfGW456L13_4606 at 5144.302 kb on + strand, within PfGW456L13_4606 at 5144.303 kb on - strand, within PfGW456L13_4606 at 5144.549 kb on - strand, within PfGW456L13_4606 at 5144.650 kb on - strand at 5144.707 kb on + strand at 5144.707 kb on + strand at 5144.707 kb on + strand at 5144.708 kb on - strand at 5144.708 kb on - strand at 5144.753 kb on - strand at 5144.779 kb on - strand at 5144.817 kb on + strand at 5144.817 kb on + strand at 5144.817 kb on + strand at 5144.817 kb on + strand at 5144.817 kb on + strand at 5144.817 kb on + strand at 5144.817 kb on + strand at 5144.818 kb on - strand at 5144.818 kb on - strand at 5144.818 kb on - strand at 5144.818 kb on - strand at 5144.818 kb on - strand at 5144.818 kb on - strand at 5144.818 kb on - strand at 5144.818 kb on - strand at 5144.965 kb on - strand, within PfGW456L13_4607 at 5144.986 kb on + strand, within PfGW456L13_4607 at 5145.000 kb on + strand at 5145.000 kb on + strand at 5145.000 kb on + strand at 5145.000 kb on + strand at 5145.001 kb on - strand at 5145.001 kb on - strand at 5145.001 kb on - strand at 5145.001 kb on - strand at 5145.001 kb on - strand at 5145.048 kb on + strand at 5145.048 kb on + strand at 5145.048 kb on + strand at 5145.048 kb on + strand at 5145.048 kb on + strand at 5145.048 kb on + strand at 5145.048 kb on + strand at 5145.048 kb on + strand at 5145.048 kb on + strand at 5145.048 kb on + strand at 5145.048 kb on + strand at 5145.049 kb on - strand at 5145.049 kb on - strand at 5145.049 kb on - strand at 5145.049 kb on - strand at 5145.049 kb on - strand at 5145.049 kb on - strand at 5145.049 kb on - strand at 5145.071 kb on + strand at 5145.071 kb on + strand at 5145.071 kb on + strand at 5145.072 kb on - strand at 5145.072 kb on - strand at 5145.072 kb on - strand at 5145.081 kb on + strand, within PfGW456L13_4608 at 5145.123 kb on + strand, within PfGW456L13_4608 at 5145.123 kb on + strand, within PfGW456L13_4608 at 5145.123 kb on + strand, within PfGW456L13_4608 at 5145.123 kb on + strand, within PfGW456L13_4608 at 5145.123 kb on + strand, within PfGW456L13_4608 at 5145.123 kb on + strand, within PfGW456L13_4608 at 5145.123 kb on + strand, within PfGW456L13_4608 at 5145.123 kb on + strand, within PfGW456L13_4608 at 5145.124 kb on - strand, within PfGW456L13_4608 at 5145.124 kb on - strand, within PfGW456L13_4608 at 5145.124 kb on - strand, within PfGW456L13_4608 at 5145.124 kb on - strand, within PfGW456L13_4608 at 5145.124 kb on - strand, within PfGW456L13_4608 at 5145.124 kb on - strand, within PfGW456L13_4608 at 5145.124 kb on - strand, within PfGW456L13_4608 at 5145.124 kb on - strand, within PfGW456L13_4608 at 5145.138 kb on + strand, within PfGW456L13_4608 at 5145.138 kb on + strand, within PfGW456L13_4608 at 5145.139 kb on - strand, within PfGW456L13_4608 at 5145.139 kb on - strand, within PfGW456L13_4608 at 5145.139 kb on - strand, within PfGW456L13_4608 at 5145.139 kb on - strand, within PfGW456L13_4608 at 5145.139 kb on - strand, within PfGW456L13_4608 at 5145.139 kb on - strand, within PfGW456L13_4608 at 5145.232 kb on + strand, within PfGW456L13_4608 at 5145.232 kb on + strand, within PfGW456L13_4608 at 5145.233 kb on - strand, within PfGW456L13_4608 at 5145.233 kb on - strand, within PfGW456L13_4608 at 5145.233 kb on - strand, within PfGW456L13_4608 at 5145.243 kb on + strand, within PfGW456L13_4608 at 5145.250 kb on - strand, within PfGW456L13_4608 at 5145.447 kb on + strand, within PfGW456L13_4608 at 5145.448 kb on - strand, within PfGW456L13_4608 at 5145.448 kb on - strand, within PfGW456L13_4608 at 5145.448 kb on - strand, within PfGW456L13_4608 at 5145.448 kb on - strand, within PfGW456L13_4608 at 5145.579 kb on - strand, within PfGW456L13_4608 at 5145.663 kb on + strand, within PfGW456L13_4608 at 5145.664 kb on - strand, within PfGW456L13_4608 at 5145.772 kb on + strand, within PfGW456L13_4608 at 5145.803 kb on + strand, within PfGW456L13_4608 at 5145.819 kb on + strand at 5145.820 kb on - strand at 5145.820 kb on - strand at 5145.820 kb on - strand at 5145.907 kb on + strand at 5145.907 kb on + strand at 5145.907 kb on + strand at 5145.908 kb on - strand at 5145.908 kb on - strand at 5145.908 kb on - strand at 5145.908 kb on - strand at 5145.908 kb on - strand at 5145.913 kb on + strand at 5145.913 kb on + strand at 5145.913 kb on + strand at 5145.914 kb on - strand at 5145.914 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (N) remove 5,143,972 + PfGW456L13_4606 0.31 -0.2 5,143,972 + PfGW456L13_4606 0.31 +0.3 5,143,972 + PfGW456L13_4606 0.31 +3.1 5,143,973 - PfGW456L13_4606 0.31 -1.5 5,143,973 - PfGW456L13_4606 0.31 +1.2 5,143,973 - PfGW456L13_4606 0.31 +0.3 5,143,973 - PfGW456L13_4606 0.31 -1.0 5,144,098 + PfGW456L13_4606 0.42 -0.7 5,144,098 + PfGW456L13_4606 0.42 -0.4 5,144,098 + PfGW456L13_4606 0.42 +0.0 5,144,098 + PfGW456L13_4606 0.42 +0.4 5,144,098 + PfGW456L13_4606 0.42 +0.1 5,144,098 + PfGW456L13_4606 0.42 +0.0 5,144,098 + PfGW456L13_4606 0.42 +0.6 5,144,098 + PfGW456L13_4606 0.42 -2.2 5,144,098 + PfGW456L13_4606 0.42 +1.5 5,144,099 - PfGW456L13_4606 0.42 +0.4 5,144,099 - PfGW456L13_4606 0.42 -1.7 5,144,099 - PfGW456L13_4606 0.42 -0.1 5,144,099 - PfGW456L13_4606 0.42 -0.2 5,144,099 - PfGW456L13_4606 0.42 +0.5 5,144,099 - PfGW456L13_4606 0.42 +1.0 5,144,099 - PfGW456L13_4606 0.42 +0.0 5,144,099 - PfGW456L13_4606 0.42 +0.4 5,144,099 - PfGW456L13_4606 0.42 -0.3 5,144,099 - PfGW456L13_4606 0.42 +0.9 5,144,099 - PfGW456L13_4606 0.42 +1.0 5,144,099 - PfGW456L13_4606 0.42 +0.3 5,144,099 - PfGW456L13_4606 0.42 -0.1 5,144,099 - PfGW456L13_4606 0.42 -0.6 5,144,099 - PfGW456L13_4606 0.42 +0.7 5,144,099 - PfGW456L13_4606 0.42 -2.0 5,144,099 - PfGW456L13_4606 0.42 +0.2 5,144,099 - PfGW456L13_4606 0.42 +0.4 5,144,099 - PfGW456L13_4606 0.42 +2.1 5,144,099 - PfGW456L13_4606 0.42 +1.9 5,144,114 + PfGW456L13_4606 0.43 -0.5 5,144,114 + PfGW456L13_4606 0.43 +0.5 5,144,155 + PfGW456L13_4606 0.47 -1.5 5,144,156 - PfGW456L13_4606 0.47 +2.1 5,144,156 - PfGW456L13_4606 0.47 +0.3 5,144,302 + PfGW456L13_4606 0.60 -0.4 5,144,302 + PfGW456L13_4606 0.60 -0.0 5,144,303 - PfGW456L13_4606 0.60 -1.0 5,144,549 - PfGW456L13_4606 0.82 -0.1 5,144,650 - -1.8 5,144,707 + +0.5 5,144,707 + -3.1 5,144,707 + +1.1 5,144,708 - -2.5 5,144,708 - +1.2 5,144,753 - +1.0 5,144,779 - +0.7 5,144,817 + -0.3 5,144,817 + -0.2 5,144,817 + -0.1 5,144,817 + -1.7 5,144,817 + -0.4 5,144,817 + -0.5 5,144,817 + -1.3 5,144,818 - -0.3 5,144,818 - +0.6 5,144,818 - -0.6 5,144,818 - +0.5 5,144,818 - -0.6 5,144,818 - +0.2 5,144,818 - -0.7 5,144,818 - -0.2 5,144,965 - PfGW456L13_4607 0.68 +0.2 5,144,986 + PfGW456L13_4607 0.84 +2.6 5,145,000 + +1.1 5,145,000 + -0.5 5,145,000 + -2.0 5,145,000 + +0.5 5,145,001 - +0.5 5,145,001 - +0.5 5,145,001 - +0.2 5,145,001 - -2.5 5,145,001 - -1.7 5,145,048 + +0.0 5,145,048 + +0.1 5,145,048 + -0.3 5,145,048 + +0.2 5,145,048 + +0.1 5,145,048 + +0.5 5,145,048 + -0.5 5,145,048 + +0.0 5,145,048 + -1.2 5,145,048 + +0.4 5,145,048 + +0.1 5,145,049 - +0.3 5,145,049 - +0.8 5,145,049 - -1.1 5,145,049 - +0.3 5,145,049 - +1.0 5,145,049 - +0.4 5,145,049 - -0.1 5,145,071 + +1.0 5,145,071 + +0.2 5,145,071 + +1.3 5,145,072 - -0.1 5,145,072 - -1.2 5,145,072 - -0.7 5,145,081 + PfGW456L13_4608 0.10 -0.4 5,145,123 + PfGW456L13_4608 0.15 -0.4 5,145,123 + PfGW456L13_4608 0.15 +0.3 5,145,123 + PfGW456L13_4608 0.15 +0.8 5,145,123 + PfGW456L13_4608 0.15 -2.0 5,145,123 + PfGW456L13_4608 0.15 +0.8 5,145,123 + PfGW456L13_4608 0.15 +0.3 5,145,123 + PfGW456L13_4608 0.15 +0.5 5,145,123 + PfGW456L13_4608 0.15 +0.3 5,145,124 - PfGW456L13_4608 0.15 +0.6 5,145,124 - PfGW456L13_4608 0.15 +0.2 5,145,124 - PfGW456L13_4608 0.15 +0.5 5,145,124 - PfGW456L13_4608 0.15 +0.8 5,145,124 - PfGW456L13_4608 0.15 +0.3 5,145,124 - PfGW456L13_4608 0.15 -1.6 5,145,124 - PfGW456L13_4608 0.15 +0.0 5,145,124 - PfGW456L13_4608 0.15 -2.2 5,145,138 + PfGW456L13_4608 0.16 -0.7 5,145,138 + PfGW456L13_4608 0.16 +0.6 5,145,139 - PfGW456L13_4608 0.16 -1.8 5,145,139 - PfGW456L13_4608 0.16 +0.6 5,145,139 - PfGW456L13_4608 0.16 +0.0 5,145,139 - PfGW456L13_4608 0.16 +0.1 5,145,139 - PfGW456L13_4608 0.16 +0.1 5,145,139 - PfGW456L13_4608 0.16 -1.7 5,145,232 + PfGW456L13_4608 0.26 +0.1 5,145,232 + PfGW456L13_4608 0.26 -1.0 5,145,233 - PfGW456L13_4608 0.27 -0.2 5,145,233 - PfGW456L13_4608 0.27 -0.1 5,145,233 - PfGW456L13_4608 0.27 +0.8 5,145,243 + PfGW456L13_4608 0.28 -0.1 5,145,250 - PfGW456L13_4608 0.28 -0.3 5,145,447 + PfGW456L13_4608 0.50 +0.6 5,145,448 - PfGW456L13_4608 0.50 -1.3 5,145,448 - PfGW456L13_4608 0.50 -0.3 5,145,448 - PfGW456L13_4608 0.50 +0.1 5,145,448 - PfGW456L13_4608 0.50 +0.4 5,145,579 - PfGW456L13_4608 0.64 -1.2 5,145,663 + PfGW456L13_4608 0.73 -0.6 5,145,664 - PfGW456L13_4608 0.73 +0.9 5,145,772 + PfGW456L13_4608 0.85 +0.4 5,145,803 + PfGW456L13_4608 0.88 +1.9 5,145,819 + -0.8 5,145,820 - +0.9 5,145,820 - -0.4 5,145,820 - +0.5 5,145,907 + -0.5 5,145,907 + -0.4 5,145,907 + +0.4 5,145,908 - +0.7 5,145,908 - -1.9 5,145,908 - +0.3 5,145,908 - -0.4 5,145,908 - +1.1 5,145,913 + -0.5 5,145,913 + +0.4 5,145,913 + -0.3 5,145,914 - -0.7 5,145,914 - +1.2
Or see this region's nucleotide sequence