Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4595

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4594 and PfGW456L13_4595 are separated by 685 nucleotidesPfGW456L13_4595 and PfGW456L13_4596 are separated by 415 nucleotides PfGW456L13_4594 - Pca regulon regulatory protein PcaR, at 5,127,122 to 5,127,964 _4594 PfGW456L13_4595 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 5,128,650 to 5,128,850 _4595 PfGW456L13_4596 - Low-affinity inorganic phosphate transporter, at 5,129,266 to 5,130,702 _4596 Position (kb) 5128 5129Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5127.657 kb on + strand, within PfGW456L13_4594at 5127.657 kb on + strand, within PfGW456L13_4594at 5127.657 kb on + strand, within PfGW456L13_4594at 5127.657 kb on + strand, within PfGW456L13_4594at 5127.657 kb on + strand, within PfGW456L13_4594at 5127.657 kb on + strand, within PfGW456L13_4594at 5127.657 kb on + strand, within PfGW456L13_4594at 5127.657 kb on + strand, within PfGW456L13_4594at 5127.657 kb on + strand, within PfGW456L13_4594at 5127.657 kb on + strand, within PfGW456L13_4594at 5127.657 kb on + strand, within PfGW456L13_4594at 5127.657 kb on + strand, within PfGW456L13_4594at 5127.657 kb on + strand, within PfGW456L13_4594at 5127.657 kb on + strand, within PfGW456L13_4594at 5127.657 kb on + strand, within PfGW456L13_4594at 5127.658 kb on - strand, within PfGW456L13_4594at 5127.658 kb on - strand, within PfGW456L13_4594at 5127.658 kb on - strand, within PfGW456L13_4594at 5127.658 kb on - strand, within PfGW456L13_4594at 5127.658 kb on - strand, within PfGW456L13_4594at 5127.658 kb on - strand, within PfGW456L13_4594at 5127.658 kb on - strand, within PfGW456L13_4594at 5127.658 kb on - strand, within PfGW456L13_4594at 5127.658 kb on - strand, within PfGW456L13_4594at 5127.658 kb on - strand, within PfGW456L13_4594at 5127.658 kb on - strand, within PfGW456L13_4594at 5127.658 kb on - strand, within PfGW456L13_4594at 5127.658 kb on - strand, within PfGW456L13_4594at 5127.658 kb on - strand, within PfGW456L13_4594at 5127.658 kb on - strand, within PfGW456L13_4594at 5127.658 kb on - strand, within PfGW456L13_4594at 5127.658 kb on - strand, within PfGW456L13_4594at 5127.658 kb on - strand, within PfGW456L13_4594at 5127.658 kb on - strand, within PfGW456L13_4594at 5127.658 kb on - strand, within PfGW456L13_4594at 5127.658 kb on - strand, within PfGW456L13_4594at 5127.658 kb on - strand, within PfGW456L13_4594at 5127.658 kb on - strand, within PfGW456L13_4594at 5127.658 kb on - strand, within PfGW456L13_4594at 5127.658 kb on - strand, within PfGW456L13_4594at 5127.658 kb on - strand, within PfGW456L13_4594at 5127.658 kb on - strand, within PfGW456L13_4594at 5127.658 kb on - strand, within PfGW456L13_4594at 5127.696 kb on + strand, within PfGW456L13_4594at 5127.697 kb on - strand, within PfGW456L13_4594at 5127.697 kb on - strand, within PfGW456L13_4594at 5127.964 kb on + strandat 5127.964 kb on + strandat 5127.964 kb on + strandat 5127.964 kb on + strandat 5127.964 kb on + strandat 5127.964 kb on + strandat 5127.964 kb on + strandat 5127.964 kb on + strandat 5127.964 kb on + strandat 5127.964 kb on + strandat 5127.964 kb on + strandat 5127.964 kb on + strandat 5127.964 kb on + strandat 5127.964 kb on + strandat 5127.964 kb on + strandat 5127.965 kb on - strandat 5127.965 kb on - strandat 5127.965 kb on - strandat 5127.965 kb on - strandat 5127.965 kb on - strandat 5127.965 kb on - strandat 5127.965 kb on - strandat 5127.965 kb on - strandat 5127.977 kb on + strandat 5127.997 kb on + strandat 5127.997 kb on + strandat 5127.998 kb on - strandat 5128.000 kb on + strandat 5128.000 kb on + strandat 5128.000 kb on + strandat 5128.000 kb on + strandat 5128.000 kb on + strandat 5128.000 kb on + strandat 5128.001 kb on - strandat 5128.001 kb on - strandat 5128.001 kb on - strandat 5128.001 kb on - strandat 5128.086 kb on + strandat 5128.087 kb on - strandat 5128.087 kb on - strandat 5128.158 kb on + strandat 5128.159 kb on - strandat 5128.159 kb on - strandat 5128.159 kb on - strandat 5128.159 kb on - strandat 5128.159 kb on - strandat 5128.159 kb on - strandat 5128.180 kb on + strandat 5128.180 kb on + strandat 5128.194 kb on + strandat 5128.194 kb on + strandat 5128.195 kb on - strandat 5128.195 kb on - strandat 5128.195 kb on - strandat 5128.242 kb on + strandat 5128.242 kb on + strandat 5128.243 kb on - strandat 5128.243 kb on - strandat 5128.246 kb on + strandat 5128.246 kb on + strandat 5128.310 kb on + strandat 5128.310 kb on + strandat 5128.311 kb on - strandat 5128.311 kb on - strandat 5128.332 kb on + strandat 5128.333 kb on - strandat 5128.335 kb on - strandat 5128.337 kb on + strandat 5128.337 kb on + strandat 5128.338 kb on - strandat 5128.338 kb on - strandat 5128.479 kb on + strandat 5128.480 kb on - strandat 5128.488 kb on + strandat 5128.488 kb on + strandat 5128.488 kb on + strandat 5128.489 kb on - strandat 5128.489 kb on - strandat 5128.489 kb on - strandat 5128.489 kb on - strandat 5128.528 kb on - strandat 5128.528 kb on - strandat 5128.528 kb on - strandat 5128.528 kb on - strandat 5128.678 kb on + strand, within PfGW456L13_4595at 5128.678 kb on + strand, within PfGW456L13_4595at 5128.679 kb on - strand, within PfGW456L13_4595at 5128.698 kb on + strand, within PfGW456L13_4595at 5128.698 kb on + strand, within PfGW456L13_4595at 5128.698 kb on + strand, within PfGW456L13_4595at 5128.699 kb on - strand, within PfGW456L13_4595at 5128.699 kb on - strand, within PfGW456L13_4595at 5128.699 kb on - strand, within PfGW456L13_4595at 5128.731 kb on + strand, within PfGW456L13_4595at 5128.731 kb on + strand, within PfGW456L13_4595at 5128.732 kb on - strand, within PfGW456L13_4595at 5128.732 kb on - strand, within PfGW456L13_4595at 5128.869 kb on + strandat 5128.869 kb on + strandat 5128.869 kb on + strandat 5128.907 kb on + strandat 5128.907 kb on + strandat 5128.907 kb on + strandat 5128.907 kb on + strandat 5128.907 kb on + strandat 5128.907 kb on + strandat 5128.907 kb on + strandat 5128.908 kb on - strandat 5128.908 kb on - strandat 5128.908 kb on - strandat 5128.908 kb on - strandat 5128.908 kb on - strandat 5128.908 kb on - strandat 5128.908 kb on - strandat 5128.908 kb on - strandat 5128.908 kb on - strandat 5128.908 kb on - strandat 5128.908 kb on - strandat 5128.908 kb on - strandat 5128.908 kb on - strandat 5128.990 kb on + strandat 5128.991 kb on - strandat 5129.160 kb on + strandat 5129.204 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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5,127,657 + PfGW456L13_4594 0.63 +0.9
5,127,657 + PfGW456L13_4594 0.63 +0.8
5,127,657 + PfGW456L13_4594 0.63 +0.1
5,127,657 + PfGW456L13_4594 0.63 +0.2
5,127,657 + PfGW456L13_4594 0.63 -0.1
5,127,657 + PfGW456L13_4594 0.63 -0.1
5,127,657 + PfGW456L13_4594 0.63 +0.3
5,127,657 + PfGW456L13_4594 0.63 +1.5
5,127,657 + PfGW456L13_4594 0.63 -0.0
5,127,657 + PfGW456L13_4594 0.63 +0.2
5,127,657 + PfGW456L13_4594 0.63 +0.5
5,127,657 + PfGW456L13_4594 0.63 -0.5
5,127,657 + PfGW456L13_4594 0.63 +0.7
5,127,657 + PfGW456L13_4594 0.63 +0.3
5,127,657 + PfGW456L13_4594 0.63 -1.2
5,127,658 - PfGW456L13_4594 0.64 +0.4
5,127,658 - PfGW456L13_4594 0.64 +0.4
5,127,658 - PfGW456L13_4594 0.64 +1.3
5,127,658 - PfGW456L13_4594 0.64 -1.3
5,127,658 - PfGW456L13_4594 0.64 +0.7
5,127,658 - PfGW456L13_4594 0.64 +0.2
5,127,658 - PfGW456L13_4594 0.64 +0.0
5,127,658 - PfGW456L13_4594 0.64 -2.1
5,127,658 - PfGW456L13_4594 0.64 -1.0
5,127,658 - PfGW456L13_4594 0.64 +0.5
5,127,658 - PfGW456L13_4594 0.64 -0.2
5,127,658 - PfGW456L13_4594 0.64 +0.5
5,127,658 - PfGW456L13_4594 0.64 -0.2
5,127,658 - PfGW456L13_4594 0.64 +0.4
5,127,658 - PfGW456L13_4594 0.64 +0.2
5,127,658 - PfGW456L13_4594 0.64 +0.6
5,127,658 - PfGW456L13_4594 0.64 -0.4
5,127,658 - PfGW456L13_4594 0.64 -1.8
5,127,658 - PfGW456L13_4594 0.64 -2.0
5,127,658 - PfGW456L13_4594 0.64 +0.3
5,127,658 - PfGW456L13_4594 0.64 +0.5
5,127,658 - PfGW456L13_4594 0.64 -0.7
5,127,658 - PfGW456L13_4594 0.64 +0.7
5,127,658 - PfGW456L13_4594 0.64 -1.2
5,127,658 - PfGW456L13_4594 0.64 +0.6
5,127,658 - PfGW456L13_4594 0.64 -0.8
5,127,658 - PfGW456L13_4594 0.64 -0.5
5,127,658 - PfGW456L13_4594 0.64 -1.2
5,127,696 + PfGW456L13_4594 0.68 +0.9
5,127,697 - PfGW456L13_4594 0.68 -1.0
5,127,697 - PfGW456L13_4594 0.68 -1.4
5,127,964 + +0.5
5,127,964 + -0.1
5,127,964 + +0.1
5,127,964 + -0.1
5,127,964 + +1.6
5,127,964 + +0.6
5,127,964 + -1.3
5,127,964 + +1.1
5,127,964 + +0.3
5,127,964 + -0.0
5,127,964 + +0.5
5,127,964 + +0.4
5,127,964 + -0.5
5,127,964 + +0.6
5,127,964 + +1.7
5,127,965 - +0.6
5,127,965 - -0.1
5,127,965 - +0.9
5,127,965 - +0.3
5,127,965 - +0.8
5,127,965 - +1.0
5,127,965 - -2.1
5,127,965 - +0.0
5,127,977 + +0.5
5,127,997 + +0.5
5,127,997 + +1.2
5,127,998 - -0.9
5,128,000 + +2.5
5,128,000 + -0.0
5,128,000 + -0.4
5,128,000 + +0.6
5,128,000 + -1.3
5,128,000 + +0.5
5,128,001 - +0.3
5,128,001 - -0.2
5,128,001 - -2.0
5,128,001 - +0.5
5,128,086 + -0.4
5,128,087 - -0.5
5,128,087 - +1.3
5,128,158 + +0.9
5,128,159 - +0.3
5,128,159 - -3.1
5,128,159 - -0.0
5,128,159 - -0.0
5,128,159 - +1.0
5,128,159 - -0.5
5,128,180 + +1.2
5,128,180 + +1.2
5,128,194 + +1.2
5,128,194 + -0.8
5,128,195 - -0.2
5,128,195 - -1.1
5,128,195 - +0.5
5,128,242 + +1.1
5,128,242 + +1.6
5,128,243 - -0.7
5,128,243 - -1.3
5,128,246 + +0.8
5,128,246 + +0.9
5,128,310 + +0.4
5,128,310 + +0.7
5,128,311 - -0.2
5,128,311 - -0.5
5,128,332 + +0.9
5,128,333 - +0.5
5,128,335 - -0.2
5,128,337 + +0.7
5,128,337 + -0.6
5,128,338 - -0.0
5,128,338 - -0.2
5,128,479 + -1.0
5,128,480 - -1.7
5,128,488 + +1.1
5,128,488 + +0.2
5,128,488 + +0.9
5,128,489 - +1.2
5,128,489 - +2.0
5,128,489 - +0.3
5,128,489 - +1.5
5,128,528 - +0.9
5,128,528 - -0.5
5,128,528 - -0.8
5,128,528 - +0.9
5,128,678 + PfGW456L13_4595 0.14 +0.9
5,128,678 + PfGW456L13_4595 0.14 +0.3
5,128,679 - PfGW456L13_4595 0.14 +0.8
5,128,698 + PfGW456L13_4595 0.24 +2.6
5,128,698 + PfGW456L13_4595 0.24 -1.2
5,128,698 + PfGW456L13_4595 0.24 -2.1
5,128,699 - PfGW456L13_4595 0.24 -1.0
5,128,699 - PfGW456L13_4595 0.24 -1.0
5,128,699 - PfGW456L13_4595 0.24 +1.5
5,128,731 + PfGW456L13_4595 0.40 -0.5
5,128,731 + PfGW456L13_4595 0.40 -0.5
5,128,732 - PfGW456L13_4595 0.41 -0.7
5,128,732 - PfGW456L13_4595 0.41 +0.3
5,128,869 + +0.3
5,128,869 + -1.2
5,128,869 + +1.0
5,128,907 + +1.9
5,128,907 + +1.6
5,128,907 + +1.3
5,128,907 + +2.5
5,128,907 + +0.8
5,128,907 + +1.5
5,128,907 + +0.2
5,128,908 - -1.8
5,128,908 - +0.6
5,128,908 - +0.1
5,128,908 - -0.4
5,128,908 - +1.1
5,128,908 - +0.4
5,128,908 - +0.3
5,128,908 - -1.0
5,128,908 - +1.0
5,128,908 - +0.9
5,128,908 - +1.3
5,128,908 - -0.7
5,128,908 - +0.3
5,128,990 + -0.2
5,128,991 - +2.0
5,129,160 + +1.9
5,129,204 + -0.4

Or see this region's nucleotide sequence