Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_451

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_450 and PfGW456L13_451 overlap by 1 nucleotidesPfGW456L13_451 and PfGW456L13_452 are separated by 129 nucleotidesPfGW456L13_452 and PfGW456L13_453 are separated by 2 nucleotides PfGW456L13_450 - Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme, at 513,811 to 515,004 _450 PfGW456L13_451 - Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases, at 515,004 to 516,362 _451 PfGW456L13_452 - Methionine ABC transporter substrate-binding protein, at 516,492 to 517,301 _452 PfGW456L13_453 - Methionine ABC transporter ATP-binding protein, at 517,304 to 518,425 _453 Position (kb) 515 516 517Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 514.093 kb on + strand, within PfGW456L13_450at 514.093 kb on + strand, within PfGW456L13_450at 514.093 kb on + strand, within PfGW456L13_450at 514.093 kb on + strand, within PfGW456L13_450at 514.094 kb on - strand, within PfGW456L13_450at 514.094 kb on - strand, within PfGW456L13_450at 514.094 kb on - strand, within PfGW456L13_450at 514.106 kb on + strand, within PfGW456L13_450at 514.106 kb on + strand, within PfGW456L13_450at 514.147 kb on + strand, within PfGW456L13_450at 514.148 kb on - strand, within PfGW456L13_450at 514.148 kb on - strand, within PfGW456L13_450at 514.204 kb on - strand, within PfGW456L13_450at 514.277 kb on - strand, within PfGW456L13_450at 514.294 kb on + strand, within PfGW456L13_450at 514.294 kb on + strand, within PfGW456L13_450at 514.295 kb on - strand, within PfGW456L13_450at 514.295 kb on - strand, within PfGW456L13_450at 514.450 kb on + strand, within PfGW456L13_450at 514.450 kb on + strand, within PfGW456L13_450at 514.450 kb on + strand, within PfGW456L13_450at 514.450 kb on + strand, within PfGW456L13_450at 514.450 kb on + strand, within PfGW456L13_450at 514.451 kb on - strand, within PfGW456L13_450at 514.451 kb on - strand, within PfGW456L13_450at 514.942 kb on + strandat 514.942 kb on + strandat 514.960 kb on + strandat 514.960 kb on + strandat 514.960 kb on + strandat 514.960 kb on + strandat 514.960 kb on + strandat 514.961 kb on - strandat 514.961 kb on - strandat 514.961 kb on - strandat 514.961 kb on - strandat 514.963 kb on + strandat 514.963 kb on + strandat 514.963 kb on + strandat 514.964 kb on - strandat 515.096 kb on + strandat 515.109 kb on + strandat 515.110 kb on - strandat 515.200 kb on - strand, within PfGW456L13_451at 515.200 kb on - strand, within PfGW456L13_451at 515.337 kb on + strand, within PfGW456L13_451at 515.338 kb on - strand, within PfGW456L13_451at 515.338 kb on - strand, within PfGW456L13_451at 515.338 kb on - strand, within PfGW456L13_451at 515.349 kb on + strand, within PfGW456L13_451at 515.349 kb on + strand, within PfGW456L13_451at 515.484 kb on + strand, within PfGW456L13_451at 515.485 kb on - strand, within PfGW456L13_451at 515.502 kb on + strand, within PfGW456L13_451at 515.502 kb on + strand, within PfGW456L13_451at 515.503 kb on - strand, within PfGW456L13_451at 515.517 kb on + strand, within PfGW456L13_451at 515.628 kb on + strand, within PfGW456L13_451at 515.628 kb on + strand, within PfGW456L13_451at 515.629 kb on - strand, within PfGW456L13_451at 515.629 kb on - strand, within PfGW456L13_451at 515.629 kb on - strand, within PfGW456L13_451at 515.629 kb on - strand, within PfGW456L13_451at 515.643 kb on + strand, within PfGW456L13_451at 515.644 kb on - strand, within PfGW456L13_451at 515.644 kb on - strand, within PfGW456L13_451at 515.917 kb on - strand, within PfGW456L13_451at 515.917 kb on - strand, within PfGW456L13_451at 515.917 kb on - strand, within PfGW456L13_451at 515.917 kb on - strand, within PfGW456L13_451at 515.980 kb on - strand, within PfGW456L13_451at 516.003 kb on + strand, within PfGW456L13_451at 516.003 kb on + strand, within PfGW456L13_451at 516.004 kb on - strand, within PfGW456L13_451at 516.004 kb on - strand, within PfGW456L13_451at 516.073 kb on + strand, within PfGW456L13_451at 516.074 kb on - strand, within PfGW456L13_451at 516.074 kb on - strand, within PfGW456L13_451at 516.102 kb on + strand, within PfGW456L13_451at 516.102 kb on + strand, within PfGW456L13_451at 516.102 kb on + strand, within PfGW456L13_451at 516.102 kb on + strand, within PfGW456L13_451at 516.102 kb on + strand, within PfGW456L13_451at 516.103 kb on - strand, within PfGW456L13_451at 516.213 kb on + strand, within PfGW456L13_451at 516.213 kb on + strand, within PfGW456L13_451at 516.213 kb on + strand, within PfGW456L13_451at 516.214 kb on - strand, within PfGW456L13_451at 516.214 kb on - strand, within PfGW456L13_451at 516.214 kb on - strand, within PfGW456L13_451at 516.214 kb on - strand, within PfGW456L13_451at 516.214 kb on - strand, within PfGW456L13_451at 516.264 kb on + strandat 516.264 kb on + strandat 516.264 kb on + strandat 516.264 kb on + strandat 516.264 kb on + strandat 516.264 kb on + strandat 516.265 kb on - strandat 516.265 kb on - strandat 516.265 kb on - strandat 516.265 kb on - strandat 516.265 kb on - strandat 516.265 kb on - strandat 516.265 kb on - strandat 516.265 kb on - strandat 516.265 kb on - strandat 516.265 kb on - strandat 516.338 kb on + strandat 516.351 kb on + strandat 516.351 kb on + strandat 516.351 kb on + strandat 516.352 kb on - strandat 516.360 kb on + strandat 516.361 kb on - strandat 516.361 kb on - strandat 516.467 kb on + strandat 516.468 kb on - strandat 516.484 kb on - strandat 516.504 kb on + strandat 516.504 kb on + strandat 516.504 kb on + strandat 516.504 kb on + strandat 516.504 kb on + strandat 516.504 kb on + strandat 516.504 kb on + strandat 516.505 kb on - strandat 516.505 kb on - strandat 516.505 kb on - strandat 516.505 kb on - strandat 516.505 kb on - strandat 516.505 kb on - strandat 516.732 kb on + strand, within PfGW456L13_452at 516.732 kb on + strand, within PfGW456L13_452at 516.732 kb on + strand, within PfGW456L13_452at 516.733 kb on - strand, within PfGW456L13_452at 516.733 kb on - strand, within PfGW456L13_452at 516.733 kb on - strand, within PfGW456L13_452at 516.733 kb on - strand, within PfGW456L13_452at 516.733 kb on - strand, within PfGW456L13_452at 516.828 kb on + strand, within PfGW456L13_452at 516.840 kb on + strand, within PfGW456L13_452at 516.840 kb on + strand, within PfGW456L13_452at 516.840 kb on + strand, within PfGW456L13_452at 516.840 kb on + strand, within PfGW456L13_452at 516.841 kb on - strand, within PfGW456L13_452at 516.841 kb on - strand, within PfGW456L13_452at 516.966 kb on + strand, within PfGW456L13_452at 517.042 kb on + strand, within PfGW456L13_452at 517.042 kb on + strand, within PfGW456L13_452at 517.042 kb on + strand, within PfGW456L13_452at 517.042 kb on + strand, within PfGW456L13_452at 517.042 kb on + strand, within PfGW456L13_452at 517.043 kb on - strand, within PfGW456L13_452at 517.050 kb on + strand, within PfGW456L13_452at 517.051 kb on - strand, within PfGW456L13_452at 517.086 kb on + strand, within PfGW456L13_452at 517.087 kb on - strand, within PfGW456L13_452at 517.087 kb on - strand, within PfGW456L13_452at 517.155 kb on + strand, within PfGW456L13_452at 517.155 kb on + strand, within PfGW456L13_452at 517.155 kb on + strand, within PfGW456L13_452at 517.155 kb on + strand, within PfGW456L13_452at 517.156 kb on - strand, within PfGW456L13_452at 517.156 kb on - strand, within PfGW456L13_452at 517.156 kb on - strand, within PfGW456L13_452at 517.224 kb on + strandat 517.224 kb on + strandat 517.224 kb on + strandat 517.224 kb on + strandat 517.224 kb on + strandat 517.224 kb on + strandat 517.225 kb on - strandat 517.225 kb on - strandat 517.278 kb on + strandat 517.279 kb on - strandat 517.279 kb on - strandat 517.279 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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514,093 + PfGW456L13_450 0.24 +1.0
514,093 + PfGW456L13_450 0.24 -1.2
514,093 + PfGW456L13_450 0.24 -0.3
514,093 + PfGW456L13_450 0.24 -0.6
514,094 - PfGW456L13_450 0.24 +0.1
514,094 - PfGW456L13_450 0.24 -0.3
514,094 - PfGW456L13_450 0.24 -0.6
514,106 + PfGW456L13_450 0.25 -1.4
514,106 + PfGW456L13_450 0.25 +0.9
514,147 + PfGW456L13_450 0.28 -0.4
514,148 - PfGW456L13_450 0.28 -0.2
514,148 - PfGW456L13_450 0.28 +0.4
514,204 - PfGW456L13_450 0.33 -0.0
514,277 - PfGW456L13_450 0.39 -0.4
514,294 + PfGW456L13_450 0.40 -3.0
514,294 + PfGW456L13_450 0.40 +0.5
514,295 - PfGW456L13_450 0.41 -0.3
514,295 - PfGW456L13_450 0.41 -0.1
514,450 + PfGW456L13_450 0.54 +0.1
514,450 + PfGW456L13_450 0.54 +1.3
514,450 + PfGW456L13_450 0.54 -0.5
514,450 + PfGW456L13_450 0.54 -0.4
514,450 + PfGW456L13_450 0.54 +1.1
514,451 - PfGW456L13_450 0.54 -0.5
514,451 - PfGW456L13_450 0.54 +0.5
514,942 + +0.1
514,942 + -1.0
514,960 + +0.1
514,960 + -2.0
514,960 + -1.8
514,960 + +0.5
514,960 + +0.2
514,961 - -2.0
514,961 - +0.3
514,961 - -0.1
514,961 - -0.8
514,963 + +1.8
514,963 + -0.9
514,963 + -0.3
514,964 - +0.2
515,096 + +0.5
515,109 + -0.1
515,110 - -1.4
515,200 - PfGW456L13_451 0.14 +1.0
515,200 - PfGW456L13_451 0.14 +0.2
515,337 + PfGW456L13_451 0.25 +1.0
515,338 - PfGW456L13_451 0.25 +0.5
515,338 - PfGW456L13_451 0.25 -2.7
515,338 - PfGW456L13_451 0.25 +0.5
515,349 + PfGW456L13_451 0.25 +1.0
515,349 + PfGW456L13_451 0.25 +0.5
515,484 + PfGW456L13_451 0.35 -0.3
515,485 - PfGW456L13_451 0.35 +0.6
515,502 + PfGW456L13_451 0.37 +0.7
515,502 + PfGW456L13_451 0.37 -0.7
515,503 - PfGW456L13_451 0.37 +0.5
515,517 + PfGW456L13_451 0.38 -0.7
515,628 + PfGW456L13_451 0.46 -0.7
515,628 + PfGW456L13_451 0.46 +0.2
515,629 - PfGW456L13_451 0.46 +0.1
515,629 - PfGW456L13_451 0.46 -0.2
515,629 - PfGW456L13_451 0.46 -0.0
515,629 - PfGW456L13_451 0.46 +0.4
515,643 + PfGW456L13_451 0.47 -2.6
515,644 - PfGW456L13_451 0.47 -1.0
515,644 - PfGW456L13_451 0.47 +0.6
515,917 - PfGW456L13_451 0.67 +0.8
515,917 - PfGW456L13_451 0.67 -1.1
515,917 - PfGW456L13_451 0.67 -0.1
515,917 - PfGW456L13_451 0.67 +0.4
515,980 - PfGW456L13_451 0.72 +0.3
516,003 + PfGW456L13_451 0.74 -1.2
516,003 + PfGW456L13_451 0.74 -0.2
516,004 - PfGW456L13_451 0.74 -0.6
516,004 - PfGW456L13_451 0.74 +0.2
516,073 + PfGW456L13_451 0.79 -1.2
516,074 - PfGW456L13_451 0.79 +1.4
516,074 - PfGW456L13_451 0.79 +0.0
516,102 + PfGW456L13_451 0.81 -2.7
516,102 + PfGW456L13_451 0.81 -0.1
516,102 + PfGW456L13_451 0.81 -0.3
516,102 + PfGW456L13_451 0.81 +0.1
516,102 + PfGW456L13_451 0.81 -1.4
516,103 - PfGW456L13_451 0.81 +0.7
516,213 + PfGW456L13_451 0.89 -0.4
516,213 + PfGW456L13_451 0.89 -1.0
516,213 + PfGW456L13_451 0.89 +1.5
516,214 - PfGW456L13_451 0.89 +1.0
516,214 - PfGW456L13_451 0.89 -2.1
516,214 - PfGW456L13_451 0.89 +0.2
516,214 - PfGW456L13_451 0.89 -0.8
516,214 - PfGW456L13_451 0.89 -0.3
516,264 + -0.4
516,264 + +0.1
516,264 + +0.4
516,264 + +0.1
516,264 + +1.6
516,264 + -0.4
516,265 - +0.3
516,265 - -0.1
516,265 - -0.5
516,265 - +0.0
516,265 - +0.9
516,265 - +0.0
516,265 - -0.9
516,265 - +1.3
516,265 - -1.5
516,265 - +0.3
516,338 + +0.0
516,351 + -1.6
516,351 + -2.0
516,351 + -0.0
516,352 - +0.6
516,360 + -0.5
516,361 - +0.3
516,361 - +0.5
516,467 + -0.6
516,468 - -0.4
516,484 - +0.5
516,504 + +0.1
516,504 + +1.8
516,504 + +0.5
516,504 + +0.2
516,504 + -0.2
516,504 + -1.4
516,504 + -0.7
516,505 - -1.1
516,505 - -0.2
516,505 - +0.6
516,505 - -0.2
516,505 - +0.4
516,505 - -0.9
516,732 + PfGW456L13_452 0.30 +0.3
516,732 + PfGW456L13_452 0.30 +1.2
516,732 + PfGW456L13_452 0.30 +1.3
516,733 - PfGW456L13_452 0.30 +1.5
516,733 - PfGW456L13_452 0.30 +0.2
516,733 - PfGW456L13_452 0.30 -0.1
516,733 - PfGW456L13_452 0.30 +1.6
516,733 - PfGW456L13_452 0.30 -0.7
516,828 + PfGW456L13_452 0.41 -0.6
516,840 + PfGW456L13_452 0.43 +0.4
516,840 + PfGW456L13_452 0.43 +0.6
516,840 + PfGW456L13_452 0.43 -3.1
516,840 + PfGW456L13_452 0.43 -1.8
516,841 - PfGW456L13_452 0.43 +0.6
516,841 - PfGW456L13_452 0.43 -2.2
516,966 + PfGW456L13_452 0.59 +0.8
517,042 + PfGW456L13_452 0.68 +0.7
517,042 + PfGW456L13_452 0.68 +1.7
517,042 + PfGW456L13_452 0.68 -0.8
517,042 + PfGW456L13_452 0.68 +0.7
517,042 + PfGW456L13_452 0.68 +1.1
517,043 - PfGW456L13_452 0.68 -3.2
517,050 + PfGW456L13_452 0.69 -2.5
517,051 - PfGW456L13_452 0.69 -0.2
517,086 + PfGW456L13_452 0.73 +1.0
517,087 - PfGW456L13_452 0.73 -0.7
517,087 - PfGW456L13_452 0.73 +0.6
517,155 + PfGW456L13_452 0.82 -2.3
517,155 + PfGW456L13_452 0.82 -1.2
517,155 + PfGW456L13_452 0.82 +0.4
517,155 + PfGW456L13_452 0.82 +1.5
517,156 - PfGW456L13_452 0.82 +0.9
517,156 - PfGW456L13_452 0.82 -1.4
517,156 - PfGW456L13_452 0.82 +0.4
517,224 + +0.3
517,224 + +1.0
517,224 + +0.2
517,224 + +0.1
517,224 + -0.1
517,224 + -0.6
517,225 - +0.2
517,225 - -1.2
517,278 + +0.4
517,279 - +1.1
517,279 - +0.2
517,279 - -0.6

Or see this region's nucleotide sequence