Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4272

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4271 and PfGW456L13_4272 are separated by 3 nucleotidesPfGW456L13_4272 and PfGW456L13_4273 overlap by 7 nucleotidesPfGW456L13_4273 and PfGW456L13_4274 are separated by 616 nucleotides PfGW456L13_4271 - Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1), at 4,786,328 to 4,788,100 _4271 PfGW456L13_4272 - Succinate dehydrogenase hydrophobic membrane anchor protein, at 4,788,104 to 4,788,472 _4272 PfGW456L13_4273 - Succinate dehydrogenase cytochrome b-556 subunit, at 4,788,466 to 4,788,588 _4273 PfGW456L13_4274 - Citrate synthase (si) (EC 2.3.3.1), at 4,789,205 to 4,790,494 _4274 Position (kb) 4788 4789Strain fitness (log2 ratio) -2 -1 0 1at 4788.994 kb on - strandat 4789.016 kb on - strandat 4789.045 kb on + strandat 4789.046 kb on - strandat 4789.046 kb on - strandat 4789.046 kb on - strandat 4789.046 kb on - strandat 4789.046 kb on - strandat 4789.112 kb on - strandat 4789.141 kb on + strandat 4789.141 kb on + strandat 4789.190 kb on + strandat 4789.190 kb on + strandat 4789.190 kb on + strandat 4789.194 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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4,788,994 - -0.8
4,789,016 - -1.9
4,789,045 + -0.8
4,789,046 - -0.9
4,789,046 - -0.8
4,789,046 - -0.6
4,789,046 - +0.2
4,789,046 - +0.1
4,789,112 - +0.6
4,789,141 + -1.6
4,789,141 + -0.6
4,789,190 + -0.5
4,789,190 + -1.4
4,789,190 + -1.3
4,789,194 + -1.6

Or see this region's nucleotide sequence