Experiment: D-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4269 and PfGW456L13_4270 are separated by 253 nucleotides PfGW456L13_4270 and PfGW456L13_4271 are separated by 11 nucleotides PfGW456L13_4271 and PfGW456L13_4272 are separated by 3 nucleotides PfGW456L13_4272 and PfGW456L13_4273 overlap by 7 nucleotides
PfGW456L13_4269 - 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2), at 4,782,527 to 4,785,358
_4269
PfGW456L13_4270 - Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1), at 4,785,612 to 4,786,316
_4270
PfGW456L13_4271 - Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1), at 4,786,328 to 4,788,100
_4271
PfGW456L13_4272 - Succinate dehydrogenase hydrophobic membrane anchor protein, at 4,788,104 to 4,788,472
_4272
PfGW456L13_4273 - Succinate dehydrogenase cytochrome b-556 subunit, at 4,788,466 to 4,788,588
_4273
Position (kb)
4786
4787
4788
4789 Strain fitness (log2 ratio)
-2
-1
0
1 at 4785.552 kb on - strand at 4785.585 kb on - strand at 4785.585 kb on - strand at 4788.994 kb on - strand at 4789.016 kb on - strand at 4789.045 kb on + strand at 4789.046 kb on - strand at 4789.046 kb on - strand at 4789.046 kb on - strand at 4789.046 kb on - strand at 4789.046 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (N) remove 4,785,552 - -1.1 4,785,585 - -0.7 4,785,585 - -1.5 4,788,994 - -0.8 4,789,016 - -1.9 4,789,045 + -0.8 4,789,046 - -0.9 4,789,046 - -0.8 4,789,046 - -0.6 4,789,046 - +0.2 4,789,046 - +0.1
Or see this region's nucleotide sequence