Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4265

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4264 and PfGW456L13_4265 are separated by 402 nucleotidesPfGW456L13_4265 and PfGW456L13_4266 overlap by 1 nucleotides PfGW456L13_4264 - Branched-chain amino acid transport system carrier protein, at 4,775,769 to 4,777,082 _4264 PfGW456L13_4265 - Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5), at 4,777,485 to 4,778,366 _4265 PfGW456L13_4266 - Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5), at 4,778,366 to 4,779,532 _4266 Position (kb) 4777 4778 4779Strain fitness (log2 ratio) -1 0 1 2at 4776.505 kb on + strand, within PfGW456L13_4264at 4776.544 kb on + strand, within PfGW456L13_4264at 4776.544 kb on + strand, within PfGW456L13_4264at 4776.544 kb on + strand, within PfGW456L13_4264at 4776.545 kb on - strand, within PfGW456L13_4264at 4776.701 kb on - strand, within PfGW456L13_4264at 4776.712 kb on + strand, within PfGW456L13_4264at 4776.713 kb on - strand, within PfGW456L13_4264at 4776.818 kb on - strand, within PfGW456L13_4264at 4776.818 kb on - strand, within PfGW456L13_4264at 4776.818 kb on - strand, within PfGW456L13_4264at 4776.981 kb on + strandat 4776.992 kb on + strandat 4776.993 kb on - strandat 4776.993 kb on - strandat 4777.091 kb on + strandat 4777.092 kb on - strandat 4777.092 kb on - strandat 4777.099 kb on + strandat 4777.099 kb on + strandat 4777.100 kb on - strandat 4777.114 kb on + strandat 4777.115 kb on - strandat 4777.158 kb on + strandat 4777.159 kb on - strandat 4777.160 kb on + strandat 4777.161 kb on - strandat 4777.161 kb on - strandat 4777.220 kb on + strandat 4777.221 kb on - strandat 4777.221 kb on - strandat 4777.221 kb on - strandat 4777.254 kb on - strandat 4777.274 kb on + strandat 4777.274 kb on + strandat 4777.274 kb on + strandat 4777.274 kb on + strandat 4777.274 kb on + strandat 4777.275 kb on - strandat 4777.275 kb on - strandat 4777.275 kb on - strandat 4777.308 kb on + strandat 4777.308 kb on + strandat 4777.308 kb on + strandat 4777.309 kb on - strandat 4777.309 kb on - strandat 4777.473 kb on + strandat 4777.486 kb on + strandat 4777.486 kb on + strandat 4777.487 kb on - strandat 4777.487 kb on - strandat 4777.487 kb on - strandat 4777.487 kb on - strandat 4777.487 kb on - strandat 4778.778 kb on + strand, within PfGW456L13_4266at 4779.283 kb on - strand, within PfGW456L13_4266

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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4,776,505 + PfGW456L13_4264 0.56 +0.1
4,776,544 + PfGW456L13_4264 0.59 +2.1
4,776,544 + PfGW456L13_4264 0.59 +0.5
4,776,544 + PfGW456L13_4264 0.59 +1.4
4,776,545 - PfGW456L13_4264 0.59 +1.1
4,776,701 - PfGW456L13_4264 0.71 -0.9
4,776,712 + PfGW456L13_4264 0.72 +1.0
4,776,713 - PfGW456L13_4264 0.72 +2.0
4,776,818 - PfGW456L13_4264 0.80 +1.4
4,776,818 - PfGW456L13_4264 0.80 +1.3
4,776,818 - PfGW456L13_4264 0.80 +0.6
4,776,981 + +2.2
4,776,992 + +1.2
4,776,993 - +1.4
4,776,993 - -0.2
4,777,091 + +0.6
4,777,092 - -1.0
4,777,092 - -0.4
4,777,099 + -0.8
4,777,099 + -1.0
4,777,100 - +2.4
4,777,114 + +0.3
4,777,115 - +1.2
4,777,158 + +0.2
4,777,159 - -0.8
4,777,160 + +0.7
4,777,161 - -1.1
4,777,161 - +0.8
4,777,220 + -0.1
4,777,221 - +0.9
4,777,221 - +1.4
4,777,221 - +2.2
4,777,254 - +0.8
4,777,274 + +1.4
4,777,274 + +1.0
4,777,274 + +1.7
4,777,274 + +0.0
4,777,274 + +1.0
4,777,275 - -0.6
4,777,275 - +1.7
4,777,275 - -1.4
4,777,308 + +0.1
4,777,308 + +0.7
4,777,308 + +1.9
4,777,309 - -1.2
4,777,309 - +0.2
4,777,473 + -0.3
4,777,486 + -0.0
4,777,486 + +1.4
4,777,487 - +0.5
4,777,487 - +1.0
4,777,487 - -0.9
4,777,487 - +0.2
4,777,487 - -1.4
4,778,778 + PfGW456L13_4266 0.35 +0.8
4,779,283 - PfGW456L13_4266 0.79 -1.2

Or see this region's nucleotide sequence