Experiment: D-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4029 and PfGW456L13_4030 are separated by 145 nucleotides PfGW456L13_4030 and PfGW456L13_4031 are separated by 12 nucleotides PfGW456L13_4031 and PfGW456L13_4032 overlap by 18 nucleotides PfGW456L13_4032 and PfGW456L13_4033 are separated by 38 nucleotides
PfGW456L13_4029 - COG0553: Superfamily II DNA/RNA helicases, SNF2 family, at 4,521,303 to 4,523,996
_4029
PfGW456L13_4030 - 5'-methylthioadenosine phosphorylase (EC 2.4.2.28), at 4,524,142 to 4,524,879
_4030
PfGW456L13_4031 - Beta N-acetyl-glucosaminidase (EC 3.2.1.52), at 4,524,892 to 4,525,902
_4031
PfGW456L13_4032 - hypothetical protein, at 4,525,885 to 4,526,022
_4032
PfGW456L13_4033 - Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family, at 4,526,061 to 4,526,768
_4033
Position (kb)
4524
4525
4526 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4523.902 kb on + strand at 4524.012 kb on + strand at 4524.013 kb on - strand at 4524.278 kb on + strand, within PfGW456L13_4030 at 4524.278 kb on + strand, within PfGW456L13_4030 at 4524.278 kb on + strand, within PfGW456L13_4030 at 4524.279 kb on - strand, within PfGW456L13_4030 at 4524.407 kb on + strand, within PfGW456L13_4030 at 4524.407 kb on + strand, within PfGW456L13_4030 at 4524.407 kb on + strand, within PfGW456L13_4030 at 4524.407 kb on + strand, within PfGW456L13_4030 at 4524.408 kb on - strand, within PfGW456L13_4030 at 4524.408 kb on - strand, within PfGW456L13_4030 at 4524.408 kb on - strand, within PfGW456L13_4030 at 4524.408 kb on - strand, within PfGW456L13_4030 at 4524.425 kb on + strand, within PfGW456L13_4030 at 4524.426 kb on - strand, within PfGW456L13_4030 at 4524.488 kb on + strand, within PfGW456L13_4030 at 4524.489 kb on - strand, within PfGW456L13_4030 at 4524.533 kb on + strand, within PfGW456L13_4030 at 4524.533 kb on + strand, within PfGW456L13_4030 at 4524.533 kb on + strand, within PfGW456L13_4030 at 4524.533 kb on + strand, within PfGW456L13_4030 at 4524.534 kb on - strand, within PfGW456L13_4030 at 4524.534 kb on - strand, within PfGW456L13_4030 at 4524.534 kb on - strand, within PfGW456L13_4030 at 4524.534 kb on - strand, within PfGW456L13_4030 at 4524.534 kb on - strand, within PfGW456L13_4030 at 4524.534 kb on - strand, within PfGW456L13_4030 at 4524.534 kb on - strand, within PfGW456L13_4030 at 4524.557 kb on + strand, within PfGW456L13_4030 at 4524.739 kb on + strand, within PfGW456L13_4030 at 4524.739 kb on + strand, within PfGW456L13_4030 at 4524.739 kb on + strand, within PfGW456L13_4030 at 4524.739 kb on + strand, within PfGW456L13_4030 at 4524.739 kb on + strand, within PfGW456L13_4030 at 4524.740 kb on - strand, within PfGW456L13_4030 at 4524.740 kb on - strand, within PfGW456L13_4030 at 4524.740 kb on - strand, within PfGW456L13_4030 at 4524.740 kb on - strand, within PfGW456L13_4030 at 4524.755 kb on + strand, within PfGW456L13_4030 at 4524.756 kb on - strand, within PfGW456L13_4030 at 4524.756 kb on - strand, within PfGW456L13_4030 at 4524.791 kb on + strand, within PfGW456L13_4030 at 4524.791 kb on + strand, within PfGW456L13_4030 at 4524.791 kb on + strand, within PfGW456L13_4030 at 4524.870 kb on - strand at 4524.879 kb on + strand at 4524.893 kb on + strand at 4524.893 kb on + strand at 4524.894 kb on - strand at 4524.957 kb on - strand at 4525.257 kb on - strand, within PfGW456L13_4031 at 4525.616 kb on + strand, within PfGW456L13_4031 at 4525.617 kb on - strand, within PfGW456L13_4031 at 4525.903 kb on - strand, within PfGW456L13_4032 at 4525.956 kb on + strand, within PfGW456L13_4032 at 4525.957 kb on - strand, within PfGW456L13_4032 at 4526.020 kb on + strand at 4526.021 kb on - strand at 4526.319 kb on - strand, within PfGW456L13_4033 at 4526.319 kb on - strand, within PfGW456L13_4033 at 4526.372 kb on - strand, within PfGW456L13_4033 at 4526.445 kb on - strand, within PfGW456L13_4033 at 4526.804 kb on - strand at 4526.866 kb on + strand at 4526.866 kb on + strand at 4526.867 kb on - strand at 4526.867 kb on - strand at 4526.867 kb on - strand at 4526.867 kb on - strand at 4526.867 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (N) remove 4,523,902 + -0.1 4,524,012 + +1.1 4,524,013 - +0.3 4,524,278 + PfGW456L13_4030 0.18 +2.0 4,524,278 + PfGW456L13_4030 0.18 -0.7 4,524,278 + PfGW456L13_4030 0.18 +0.3 4,524,279 - PfGW456L13_4030 0.19 +0.3 4,524,407 + PfGW456L13_4030 0.36 -0.0 4,524,407 + PfGW456L13_4030 0.36 -0.4 4,524,407 + PfGW456L13_4030 0.36 +0.5 4,524,407 + PfGW456L13_4030 0.36 +0.3 4,524,408 - PfGW456L13_4030 0.36 -0.4 4,524,408 - PfGW456L13_4030 0.36 +1.1 4,524,408 - PfGW456L13_4030 0.36 +0.1 4,524,408 - PfGW456L13_4030 0.36 -0.7 4,524,425 + PfGW456L13_4030 0.38 +0.5 4,524,426 - PfGW456L13_4030 0.38 +0.8 4,524,488 + PfGW456L13_4030 0.47 -3.0 4,524,489 - PfGW456L13_4030 0.47 -0.7 4,524,533 + PfGW456L13_4030 0.53 +0.2 4,524,533 + PfGW456L13_4030 0.53 -0.3 4,524,533 + PfGW456L13_4030 0.53 +0.3 4,524,533 + PfGW456L13_4030 0.53 -1.7 4,524,534 - PfGW456L13_4030 0.53 -1.2 4,524,534 - PfGW456L13_4030 0.53 +0.7 4,524,534 - PfGW456L13_4030 0.53 -2.4 4,524,534 - PfGW456L13_4030 0.53 +0.5 4,524,534 - PfGW456L13_4030 0.53 +1.8 4,524,534 - PfGW456L13_4030 0.53 -1.8 4,524,534 - PfGW456L13_4030 0.53 -0.4 4,524,557 + PfGW456L13_4030 0.56 +0.4 4,524,739 + PfGW456L13_4030 0.81 +2.4 4,524,739 + PfGW456L13_4030 0.81 +0.1 4,524,739 + PfGW456L13_4030 0.81 -0.3 4,524,739 + PfGW456L13_4030 0.81 +0.1 4,524,739 + PfGW456L13_4030 0.81 -0.4 4,524,740 - PfGW456L13_4030 0.81 -1.2 4,524,740 - PfGW456L13_4030 0.81 -0.2 4,524,740 - PfGW456L13_4030 0.81 -0.5 4,524,740 - PfGW456L13_4030 0.81 -1.4 4,524,755 + PfGW456L13_4030 0.83 +1.1 4,524,756 - PfGW456L13_4030 0.83 +0.1 4,524,756 - PfGW456L13_4030 0.83 +0.5 4,524,791 + PfGW456L13_4030 0.88 +0.1 4,524,791 + PfGW456L13_4030 0.88 +0.4 4,524,791 + PfGW456L13_4030 0.88 +0.4 4,524,870 - +1.1 4,524,879 + -0.6 4,524,893 + -3.4 4,524,893 + +0.5 4,524,894 - +0.1 4,524,957 - -3.1 4,525,257 - PfGW456L13_4031 0.36 -3.3 4,525,616 + PfGW456L13_4031 0.72 -4.1 4,525,617 - PfGW456L13_4031 0.72 -1.1 4,525,903 - PfGW456L13_4032 0.13 +1.5 4,525,956 + PfGW456L13_4032 0.51 -0.9 4,525,957 - PfGW456L13_4032 0.52 -0.5 4,526,020 + -2.4 4,526,021 - +0.4 4,526,319 - PfGW456L13_4033 0.36 +2.1 4,526,319 - PfGW456L13_4033 0.36 -0.7 4,526,372 - PfGW456L13_4033 0.44 -1.1 4,526,445 - PfGW456L13_4033 0.54 -1.5 4,526,804 - +0.1 4,526,866 + +0.7 4,526,866 + +1.7 4,526,867 - +0.5 4,526,867 - +0.2 4,526,867 - +0.1 4,526,867 - -0.9 4,526,867 - -1.5
Or see this region's nucleotide sequence