Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4031

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4029 and PfGW456L13_4030 are separated by 145 nucleotidesPfGW456L13_4030 and PfGW456L13_4031 are separated by 12 nucleotidesPfGW456L13_4031 and PfGW456L13_4032 overlap by 18 nucleotidesPfGW456L13_4032 and PfGW456L13_4033 are separated by 38 nucleotides PfGW456L13_4029 - COG0553: Superfamily II DNA/RNA helicases, SNF2 family, at 4,521,303 to 4,523,996 _4029 PfGW456L13_4030 - 5'-methylthioadenosine phosphorylase (EC 2.4.2.28), at 4,524,142 to 4,524,879 _4030 PfGW456L13_4031 - Beta N-acetyl-glucosaminidase (EC 3.2.1.52), at 4,524,892 to 4,525,902 _4031 PfGW456L13_4032 - hypothetical protein, at 4,525,885 to 4,526,022 _4032 PfGW456L13_4033 - Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family, at 4,526,061 to 4,526,768 _4033 Position (kb) 4524 4525 4526Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4523.902 kb on + strandat 4524.012 kb on + strandat 4524.013 kb on - strandat 4524.278 kb on + strand, within PfGW456L13_4030at 4524.278 kb on + strand, within PfGW456L13_4030at 4524.278 kb on + strand, within PfGW456L13_4030at 4524.279 kb on - strand, within PfGW456L13_4030at 4524.407 kb on + strand, within PfGW456L13_4030at 4524.407 kb on + strand, within PfGW456L13_4030at 4524.407 kb on + strand, within PfGW456L13_4030at 4524.407 kb on + strand, within PfGW456L13_4030at 4524.408 kb on - strand, within PfGW456L13_4030at 4524.408 kb on - strand, within PfGW456L13_4030at 4524.408 kb on - strand, within PfGW456L13_4030at 4524.408 kb on - strand, within PfGW456L13_4030at 4524.425 kb on + strand, within PfGW456L13_4030at 4524.426 kb on - strand, within PfGW456L13_4030at 4524.488 kb on + strand, within PfGW456L13_4030at 4524.489 kb on - strand, within PfGW456L13_4030at 4524.533 kb on + strand, within PfGW456L13_4030at 4524.533 kb on + strand, within PfGW456L13_4030at 4524.533 kb on + strand, within PfGW456L13_4030at 4524.533 kb on + strand, within PfGW456L13_4030at 4524.534 kb on - strand, within PfGW456L13_4030at 4524.534 kb on - strand, within PfGW456L13_4030at 4524.534 kb on - strand, within PfGW456L13_4030at 4524.534 kb on - strand, within PfGW456L13_4030at 4524.534 kb on - strand, within PfGW456L13_4030at 4524.534 kb on - strand, within PfGW456L13_4030at 4524.534 kb on - strand, within PfGW456L13_4030at 4524.557 kb on + strand, within PfGW456L13_4030at 4524.739 kb on + strand, within PfGW456L13_4030at 4524.739 kb on + strand, within PfGW456L13_4030at 4524.739 kb on + strand, within PfGW456L13_4030at 4524.739 kb on + strand, within PfGW456L13_4030at 4524.739 kb on + strand, within PfGW456L13_4030at 4524.740 kb on - strand, within PfGW456L13_4030at 4524.740 kb on - strand, within PfGW456L13_4030at 4524.740 kb on - strand, within PfGW456L13_4030at 4524.740 kb on - strand, within PfGW456L13_4030at 4524.755 kb on + strand, within PfGW456L13_4030at 4524.756 kb on - strand, within PfGW456L13_4030at 4524.756 kb on - strand, within PfGW456L13_4030at 4524.791 kb on + strand, within PfGW456L13_4030at 4524.791 kb on + strand, within PfGW456L13_4030at 4524.791 kb on + strand, within PfGW456L13_4030at 4524.870 kb on - strandat 4524.879 kb on + strandat 4524.893 kb on + strandat 4524.893 kb on + strandat 4524.894 kb on - strandat 4524.957 kb on - strandat 4525.257 kb on - strand, within PfGW456L13_4031at 4525.616 kb on + strand, within PfGW456L13_4031at 4525.617 kb on - strand, within PfGW456L13_4031at 4525.903 kb on - strand, within PfGW456L13_4032at 4525.956 kb on + strand, within PfGW456L13_4032at 4525.957 kb on - strand, within PfGW456L13_4032at 4526.020 kb on + strandat 4526.021 kb on - strandat 4526.319 kb on - strand, within PfGW456L13_4033at 4526.319 kb on - strand, within PfGW456L13_4033at 4526.372 kb on - strand, within PfGW456L13_4033at 4526.445 kb on - strand, within PfGW456L13_4033at 4526.804 kb on - strandat 4526.866 kb on + strandat 4526.866 kb on + strandat 4526.867 kb on - strandat 4526.867 kb on - strandat 4526.867 kb on - strandat 4526.867 kb on - strandat 4526.867 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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4,523,902 + -0.1
4,524,012 + +1.1
4,524,013 - +0.3
4,524,278 + PfGW456L13_4030 0.18 +2.0
4,524,278 + PfGW456L13_4030 0.18 -0.7
4,524,278 + PfGW456L13_4030 0.18 +0.3
4,524,279 - PfGW456L13_4030 0.19 +0.3
4,524,407 + PfGW456L13_4030 0.36 -0.0
4,524,407 + PfGW456L13_4030 0.36 -0.4
4,524,407 + PfGW456L13_4030 0.36 +0.5
4,524,407 + PfGW456L13_4030 0.36 +0.3
4,524,408 - PfGW456L13_4030 0.36 -0.4
4,524,408 - PfGW456L13_4030 0.36 +1.1
4,524,408 - PfGW456L13_4030 0.36 +0.1
4,524,408 - PfGW456L13_4030 0.36 -0.7
4,524,425 + PfGW456L13_4030 0.38 +0.5
4,524,426 - PfGW456L13_4030 0.38 +0.8
4,524,488 + PfGW456L13_4030 0.47 -3.0
4,524,489 - PfGW456L13_4030 0.47 -0.7
4,524,533 + PfGW456L13_4030 0.53 +0.2
4,524,533 + PfGW456L13_4030 0.53 -0.3
4,524,533 + PfGW456L13_4030 0.53 +0.3
4,524,533 + PfGW456L13_4030 0.53 -1.7
4,524,534 - PfGW456L13_4030 0.53 -1.2
4,524,534 - PfGW456L13_4030 0.53 +0.7
4,524,534 - PfGW456L13_4030 0.53 -2.4
4,524,534 - PfGW456L13_4030 0.53 +0.5
4,524,534 - PfGW456L13_4030 0.53 +1.8
4,524,534 - PfGW456L13_4030 0.53 -1.8
4,524,534 - PfGW456L13_4030 0.53 -0.4
4,524,557 + PfGW456L13_4030 0.56 +0.4
4,524,739 + PfGW456L13_4030 0.81 +2.4
4,524,739 + PfGW456L13_4030 0.81 +0.1
4,524,739 + PfGW456L13_4030 0.81 -0.3
4,524,739 + PfGW456L13_4030 0.81 +0.1
4,524,739 + PfGW456L13_4030 0.81 -0.4
4,524,740 - PfGW456L13_4030 0.81 -1.2
4,524,740 - PfGW456L13_4030 0.81 -0.2
4,524,740 - PfGW456L13_4030 0.81 -0.5
4,524,740 - PfGW456L13_4030 0.81 -1.4
4,524,755 + PfGW456L13_4030 0.83 +1.1
4,524,756 - PfGW456L13_4030 0.83 +0.1
4,524,756 - PfGW456L13_4030 0.83 +0.5
4,524,791 + PfGW456L13_4030 0.88 +0.1
4,524,791 + PfGW456L13_4030 0.88 +0.4
4,524,791 + PfGW456L13_4030 0.88 +0.4
4,524,870 - +1.1
4,524,879 + -0.6
4,524,893 + -3.4
4,524,893 + +0.5
4,524,894 - +0.1
4,524,957 - -3.1
4,525,257 - PfGW456L13_4031 0.36 -3.3
4,525,616 + PfGW456L13_4031 0.72 -4.1
4,525,617 - PfGW456L13_4031 0.72 -1.1
4,525,903 - PfGW456L13_4032 0.13 +1.5
4,525,956 + PfGW456L13_4032 0.51 -0.9
4,525,957 - PfGW456L13_4032 0.52 -0.5
4,526,020 + -2.4
4,526,021 - +0.4
4,526,319 - PfGW456L13_4033 0.36 +2.1
4,526,319 - PfGW456L13_4033 0.36 -0.7
4,526,372 - PfGW456L13_4033 0.44 -1.1
4,526,445 - PfGW456L13_4033 0.54 -1.5
4,526,804 - +0.1
4,526,866 + +0.7
4,526,866 + +1.7
4,526,867 - +0.5
4,526,867 - +0.2
4,526,867 - +0.1
4,526,867 - -0.9
4,526,867 - -1.5

Or see this region's nucleotide sequence