Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3059

Experiment: D-Serine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Serine (N)
3,398,811	+		PfGW456L13_3058	0.24	-0.4
3,398,888	+		PfGW456L13_3058	0.32	+1.0
3,398,889	-		PfGW456L13_3058	0.32	-0.5
3,399,030	-		PfGW456L13_3058	0.47	-0.2
3,399,030	-		PfGW456L13_3058	0.47	-2.0
3,399,030	-		PfGW456L13_3058	0.47	+0.7
3,399,114	-		PfGW456L13_3058	0.56	-1.0
3,399,141	+		PfGW456L13_3058	0.58	+0.3
3,399,141	+		PfGW456L13_3058	0.58	-1.1
3,399,141	+		PfGW456L13_3058	0.58	+0.1
3,399,141	+		PfGW456L13_3058	0.58	+0.0
3,399,141	+		PfGW456L13_3058	0.58	-1.2
3,399,174	+		PfGW456L13_3058	0.62	+1.8
3,399,174	+		PfGW456L13_3058	0.62	-0.3
3,399,175	-		PfGW456L13_3058	0.62	+0.2
3,399,175	-		PfGW456L13_3058	0.62	+0.2
3,399,175	-		PfGW456L13_3058	0.62	+0.3
3,399,225	+		PfGW456L13_3058	0.67	-0.4
3,399,225	+		PfGW456L13_3058	0.67	-1.5
3,399,225	+		PfGW456L13_3058	0.67	+0.6
3,399,225	+		PfGW456L13_3058	0.67	+0.4
3,399,225	+		PfGW456L13_3058	0.67	-1.3
3,399,226	-		PfGW456L13_3058	0.67	+0.0
3,399,226	-		PfGW456L13_3058	0.67	-1.0
3,399,226	-		PfGW456L13_3058	0.67	-0.0
3,399,226	-		PfGW456L13_3058	0.67	-0.3
3,399,226	-		PfGW456L13_3058	0.67	-1.0
3,399,332	+		PfGW456L13_3058	0.78	-0.8
3,399,332	+		PfGW456L13_3058	0.78	-1.3
3,399,332	+				+1.0
3,399,333	-		PfGW456L13_3058	0.78	-2.9
3,399,402	+		PfGW456L13_3058	0.85	+0.1
3,399,402	+		PfGW456L13_3058	0.85	-1.7
3,399,402	+		PfGW456L13_3058	0.85	+0.7
3,399,403	-		PfGW456L13_3058	0.86	+0.7
3,399,403	-		PfGW456L13_3058	0.86	-0.9
3,399,459	+				-1.1
3,399,648	+				-1.2
3,399,649	-				-1.4
3,399,740	-				+0.6
3,399,748	+				+0.1
3,399,748	+				-0.8
3,399,748	+				+0.9
3,399,749	-				+0.4
3,399,751	+				-1.4
3,399,751	+				-0.4
3,399,751	+				-0.0
3,399,751	+				+0.6
3,399,751	+				+0.2
3,399,752	-				-0.5
3,399,752	-				-2.2
3,399,752	-				-1.0
3,399,752	-				-1.4
3,399,752	-				+0.4
3,399,799	+				-1.4
3,399,799	+				-0.6
3,399,800	-				-0.1
3,399,800	-				-0.0
3,399,800	-				-0.4
3,399,800	-				-1.6
3,399,888	+				-0.8
3,399,888	+				-0.5
3,399,889	-				-0.5
3,399,889	-				-2.8
3,399,889	-				+0.6
3,400,001	-				+0.4
3,400,054	+		PfGW456L13_3059	0.21	-0.6
3,400,055	-		PfGW456L13_3059	0.21	-1.0
3,400,095	+				-1.6
3,400,095	+		PfGW456L13_3059	0.24	-2.2
3,400,095	+		PfGW456L13_3059	0.24	-0.7
3,400,095	+		PfGW456L13_3059	0.24	-0.3
3,400,095	+		PfGW456L13_3059	0.24	-1.4
3,400,096	-		PfGW456L13_3059	0.24	-1.3
3,400,096	-		PfGW456L13_3059	0.24	-0.5
3,400,096	-		PfGW456L13_3059	0.24	-1.6
3,400,096	-		PfGW456L13_3059	0.24	-1.2
3,400,096	-		PfGW456L13_3059	0.24	+0.7
3,400,096	-		PfGW456L13_3059	0.24	+0.4
3,400,107	+		PfGW456L13_3059	0.25	+0.9
3,400,107	+		PfGW456L13_3059	0.25	-0.4
3,400,107	+		PfGW456L13_3059	0.25	+1.7
3,400,108	-		PfGW456L13_3059	0.25	-2.1
3,400,108	-		PfGW456L13_3059	0.25	-1.0
3,400,678	+		PfGW456L13_3059	0.65	-1.9
3,400,679	-		PfGW456L13_3059	0.65	-0.1
3,401,102	-				-2.3
3,401,236	+				-1.1
3,401,246	+				+0.3
3,401,246	+				+0.1
3,401,247	-				-0.9
3,401,247	-				-0.0
3,401,247	-				+0.1
3,401,250	+				+0.7
3,401,250	+				+0.3
3,401,250	+				-0.4
3,401,250	+				+1.0
3,401,250	+				-0.0
3,401,250	+				-0.8
3,401,250	+				-2.1
3,401,250	+				-0.0
3,401,250	+				+1.0
3,401,250	+				+0.2
3,401,250	+				-0.4
3,401,251	-				-0.9
3,401,251	-				-0.3
3,401,525	+		PfGW456L13_3060	0.11	+1.0
3,401,526	-		PfGW456L13_3060	0.11	-1.2
3,401,526	-		PfGW456L13_3060	0.11	+0.5
3,401,650	-		PfGW456L13_3060	0.15	-0.5
3,401,664	-		PfGW456L13_3060	0.16	-1.2
3,401,733	+		PfGW456L13_3060	0.18	-1.0
3,401,734	-		PfGW456L13_3060	0.18	-0.6
3,401,734	-		PfGW456L13_3060	0.18	-1.0
3,401,754	+		PfGW456L13_3060	0.18	-1.4
3,401,754	+		PfGW456L13_3060	0.18	-1.1
3,401,754	+		PfGW456L13_3060	0.18	-0.4
3,401,755	-		PfGW456L13_3060	0.18	-2.0
3,401,755	-		PfGW456L13_3060	0.18	+0.6
3,401,755	-		PfGW456L13_3060	0.18	-0.6
3,401,755	-		PfGW456L13_3060	0.18	-0.3
3,401,755	-		PfGW456L13_3060	0.18	-0.1
3,401,755	-		PfGW456L13_3060	0.18	-0.2
3,401,823	+		PfGW456L13_3060	0.21	+0.3
3,401,824	-		PfGW456L13_3060	0.21	-1.5
3,401,824	-		PfGW456L13_3060	0.21	-2.6
3,401,871	+		PfGW456L13_3060	0.22	-1.0
3,401,871	+		PfGW456L13_3060	0.22	-0.4
3,401,871	+		PfGW456L13_3060	0.22	-0.6
3,401,871	+		PfGW456L13_3060	0.22	+0.2
3,401,871	+		PfGW456L13_3060	0.22	-0.8
3,401,871	+		PfGW456L13_3060	0.22	-1.2
3,401,872	-		PfGW456L13_3060	0.22	+0.1
3,401,872	-		PfGW456L13_3060	0.22	-0.7
3,401,872	-		PfGW456L13_3060	0.22	+0.4
3,401,872	-		PfGW456L13_3060	0.22	-0.9
3,401,899	+		PfGW456L13_3060	0.23	-1.7
3,401,900	-		PfGW456L13_3060	0.23	-1.0
3,401,950	+		PfGW456L13_3060	0.24	-0.9
3,401,951	-		PfGW456L13_3060	0.25	-1.6
3,402,021	+		PfGW456L13_3060	0.27	-2.6
3,402,021	+		PfGW456L13_3060	0.27	-0.9
3,402,021	+		PfGW456L13_3060	0.27	-0.5
3,402,021	+		PfGW456L13_3060	0.27	+1.0
3,402,022	-		PfGW456L13_3060	0.27	-1.7
3,402,022	-		PfGW456L13_3060	0.27	-0.7
3,402,054	+		PfGW456L13_3060	0.28	-1.8
3,402,054	+		PfGW456L13_3060	0.28	-1.3
3,402,055	-		PfGW456L13_3060	0.28	+0.4
3,402,069	+		PfGW456L13_3060	0.28	-1.2
3,402,069	+		PfGW456L13_3060	0.28	-0.5
3,402,069	+		PfGW456L13_3060	0.28	-0.5
3,402,069	+		PfGW456L13_3060	0.28	-0.8
3,402,069	+		PfGW456L13_3060	0.28	+0.7
3,402,069	+		PfGW456L13_3060	0.28	-0.6
3,402,070	-		PfGW456L13_3060	0.28	-0.4
3,402,070	-		PfGW456L13_3060	0.28	+0.3
3,402,070	-		PfGW456L13_3060	0.28	+0.5
3,402,070	-		PfGW456L13_3060	0.28	+0.3
3,402,070	-		PfGW456L13_3060	0.28	-0.0
3,402,070	-		PfGW456L13_3060	0.28	-0.4
3,402,168	+		PfGW456L13_3060	0.31	-0.1
3,402,168	+		PfGW456L13_3060	0.31	+1.0
3,402,168	+		PfGW456L13_3060	0.31	+0.8
3,402,169	-		PfGW456L13_3060	0.31	-0.5
3,402,169	-		PfGW456L13_3060	0.31	-0.8
3,402,169	-		PfGW456L13_3060	0.31	+0.7
3,402,169	-		PfGW456L13_3060	0.31	+0.3
3,402,169	-		PfGW456L13_3060	0.31	-0.8