Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_29

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_28 and PfGW456L13_29 are separated by 656 nucleotidesPfGW456L13_29 and PfGW456L13_30 are separated by 223 nucleotides PfGW456L13_28 - Methyl-accepting chemotaxis protein, at 32,307 to 34,253 _28 PfGW456L13_29 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 34,910 to 36,187 _29 PfGW456L13_30 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 36,411 to 37,763 _30 Position (kb) 34 35 36 37Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 34.247 kb on + strandat 34.387 kb on + strandat 34.387 kb on + strandat 34.520 kb on + strandat 34.520 kb on + strandat 34.653 kb on + strandat 34.653 kb on + strandat 34.786 kb on + strandat 34.786 kb on + strandat 34.786 kb on + strandat 34.786 kb on + strandat 34.786 kb on + strandat 34.786 kb on + strandat 34.896 kb on - strandat 35.199 kb on + strand, within PfGW456L13_29at 35.200 kb on - strand, within PfGW456L13_29at 35.200 kb on - strand, within PfGW456L13_29at 35.200 kb on - strand, within PfGW456L13_29at 35.202 kb on + strand, within PfGW456L13_29at 35.202 kb on + strand, within PfGW456L13_29at 35.203 kb on - strand, within PfGW456L13_29at 35.328 kb on + strand, within PfGW456L13_29at 35.329 kb on - strand, within PfGW456L13_29at 35.451 kb on + strand, within PfGW456L13_29at 35.452 kb on - strand, within PfGW456L13_29at 35.452 kb on - strand, within PfGW456L13_29at 35.452 kb on - strand, within PfGW456L13_29at 35.934 kb on + strand, within PfGW456L13_29at 35.934 kb on + strand, within PfGW456L13_29at 35.934 kb on + strand, within PfGW456L13_29at 35.934 kb on + strand, within PfGW456L13_29at 35.934 kb on + strand, within PfGW456L13_29at 35.935 kb on - strand, within PfGW456L13_29at 35.935 kb on - strand, within PfGW456L13_29at 35.970 kb on - strand, within PfGW456L13_29at 35.970 kb on - strand, within PfGW456L13_29at 36.057 kb on + strand, within PfGW456L13_29at 36.057 kb on + strand, within PfGW456L13_29at 36.058 kb on - strand, within PfGW456L13_29at 36.058 kb on - strand, within PfGW456L13_29at 36.058 kb on - strand, within PfGW456L13_29at 36.118 kb on - strandat 36.118 kb on - strandat 36.286 kb on + strandat 36.286 kb on + strandat 36.287 kb on - strandat 36.287 kb on - strandat 36.287 kb on - strandat 36.315 kb on + strandat 36.315 kb on + strandat 36.315 kb on + strandat 36.315 kb on + strandat 36.315 kb on + strandat 36.315 kb on + strandat 36.316 kb on - strandat 36.316 kb on - strandat 36.316 kb on - strandat 36.316 kb on - strandat 36.332 kb on + strandat 36.332 kb on + strandat 36.332 kb on + strandat 36.332 kb on + strandat 36.333 kb on - strandat 36.339 kb on + strandat 36.339 kb on + strandat 36.340 kb on - strandat 36.340 kb on - strandat 36.424 kb on - strandat 36.424 kb on - strandat 36.424 kb on - strandat 36.424 kb on - strandat 36.426 kb on - strandat 36.529 kb on + strandat 36.529 kb on + strandat 36.529 kb on + strandat 36.529 kb on + strandat 36.530 kb on - strandat 36.530 kb on - strandat 36.530 kb on - strandat 36.530 kb on - strandat 36.609 kb on + strand, within PfGW456L13_30at 36.609 kb on + strand, within PfGW456L13_30at 36.609 kb on + strand, within PfGW456L13_30at 36.609 kb on + strand, within PfGW456L13_30at 36.609 kb on + strand, within PfGW456L13_30at 36.610 kb on - strand, within PfGW456L13_30at 36.610 kb on - strand, within PfGW456L13_30at 36.610 kb on - strand, within PfGW456L13_30at 36.610 kb on - strand, within PfGW456L13_30at 36.615 kb on + strand, within PfGW456L13_30at 36.615 kb on + strand, within PfGW456L13_30at 36.615 kb on + strand, within PfGW456L13_30at 36.615 kb on + strand, within PfGW456L13_30at 36.615 kb on + strand, within PfGW456L13_30at 36.615 kb on + strand, within PfGW456L13_30at 36.616 kb on - strand, within PfGW456L13_30at 36.616 kb on - strand, within PfGW456L13_30at 36.877 kb on + strand, within PfGW456L13_30at 36.878 kb on - strand, within PfGW456L13_30at 36.906 kb on + strand, within PfGW456L13_30at 36.906 kb on + strand, within PfGW456L13_30at 36.906 kb on + strand, within PfGW456L13_30at 36.906 kb on + strand, within PfGW456L13_30at 36.906 kb on + strand, within PfGW456L13_30at 36.906 kb on + strand, within PfGW456L13_30at 36.906 kb on + strand, within PfGW456L13_30at 36.906 kb on + strand, within PfGW456L13_30at 36.907 kb on - strand, within PfGW456L13_30at 36.907 kb on - strand, within PfGW456L13_30at 36.907 kb on - strand, within PfGW456L13_30at 36.907 kb on - strand, within PfGW456L13_30at 36.907 kb on - strand, within PfGW456L13_30at 36.907 kb on - strand, within PfGW456L13_30

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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34,247 + +0.1
34,387 + -0.7
34,387 + +0.6
34,520 + +0.7
34,520 + +0.6
34,653 + -1.4
34,653 + -1.2
34,786 + -0.5
34,786 + +0.5
34,786 + -0.1
34,786 + -0.8
34,786 + +0.7
34,786 + -1.7
34,896 - -2.6
35,199 + PfGW456L13_29 0.23 -0.0
35,200 - PfGW456L13_29 0.23 -1.0
35,200 - PfGW456L13_29 0.23 -0.5
35,200 - PfGW456L13_29 0.23 -0.7
35,202 + PfGW456L13_29 0.23 -1.0
35,202 + PfGW456L13_29 0.23 +0.6
35,203 - PfGW456L13_29 0.23 +1.7
35,328 + PfGW456L13_29 0.33 +1.9
35,329 - PfGW456L13_29 0.33 -0.7
35,451 + PfGW456L13_29 0.42 -0.1
35,452 - PfGW456L13_29 0.42 +1.2
35,452 - PfGW456L13_29 0.42 +0.2
35,452 - PfGW456L13_29 0.42 +0.9
35,934 + PfGW456L13_29 0.80 -0.3
35,934 + PfGW456L13_29 0.80 +0.7
35,934 + PfGW456L13_29 0.80 -1.3
35,934 + PfGW456L13_29 0.80 -1.1
35,934 + PfGW456L13_29 0.80 +0.1
35,935 - PfGW456L13_29 0.80 -1.8
35,935 - PfGW456L13_29 0.80 -2.0
35,970 - PfGW456L13_29 0.83 -0.3
35,970 - PfGW456L13_29 0.83 +0.0
36,057 + PfGW456L13_29 0.90 -0.2
36,057 + PfGW456L13_29 0.90 -1.1
36,058 - PfGW456L13_29 0.90 +0.3
36,058 - PfGW456L13_29 0.90 +1.1
36,058 - PfGW456L13_29 0.90 -0.3
36,118 - -0.2
36,118 - +1.1
36,286 + -0.3
36,286 + +0.1
36,287 - -0.5
36,287 - +0.3
36,287 - +0.3
36,315 + -2.4
36,315 + -0.4
36,315 + +0.0
36,315 + -1.0
36,315 + -0.9
36,315 + -0.1
36,316 - -0.5
36,316 - +0.5
36,316 - -1.5
36,316 - -0.5
36,332 + -1.2
36,332 + +0.2
36,332 + +0.4
36,332 + +0.1
36,333 - -3.4
36,339 + +0.6
36,339 + +2.1
36,340 - -0.9
36,340 - -0.4
36,424 - -0.1
36,424 - -0.2
36,424 - -2.7
36,424 - +2.3
36,426 - -0.1
36,529 + +0.3
36,529 + +1.4
36,529 + +1.3
36,529 + +0.7
36,530 - -0.9
36,530 - -2.0
36,530 - -0.1
36,530 - -1.9
36,609 + PfGW456L13_30 0.15 -1.9
36,609 + PfGW456L13_30 0.15 +1.0
36,609 + PfGW456L13_30 0.15 -1.4
36,609 + PfGW456L13_30 0.15 +1.1
36,609 + PfGW456L13_30 0.15 -0.8
36,610 - PfGW456L13_30 0.15 -0.6
36,610 - PfGW456L13_30 0.15 -0.3
36,610 - PfGW456L13_30 0.15 -0.7
36,610 - PfGW456L13_30 0.15 -0.7
36,615 + PfGW456L13_30 0.15 +0.5
36,615 + PfGW456L13_30 0.15 -0.6
36,615 + PfGW456L13_30 0.15 -1.3
36,615 + PfGW456L13_30 0.15 -0.7
36,615 + PfGW456L13_30 0.15 -2.3
36,615 + PfGW456L13_30 0.15 -1.5
36,616 - PfGW456L13_30 0.15 +0.6
36,616 - PfGW456L13_30 0.15 -0.7
36,877 + PfGW456L13_30 0.34 -0.3
36,878 - PfGW456L13_30 0.35 +1.5
36,906 + PfGW456L13_30 0.37 -0.5
36,906 + PfGW456L13_30 0.37 -0.0
36,906 + PfGW456L13_30 0.37 +0.1
36,906 + PfGW456L13_30 0.37 +1.2
36,906 + PfGW456L13_30 0.37 -1.2
36,906 + PfGW456L13_30 0.37 -0.5
36,906 + PfGW456L13_30 0.37 +1.4
36,906 + PfGW456L13_30 0.37 +0.1
36,907 - PfGW456L13_30 0.37 +0.0
36,907 - PfGW456L13_30 0.37 -3.3
36,907 - PfGW456L13_30 0.37 -1.1
36,907 - PfGW456L13_30 0.37 +0.7
36,907 - PfGW456L13_30 0.37 +0.9
36,907 - PfGW456L13_30 0.37 -0.9

Or see this region's nucleotide sequence