Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_282

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_281 and PfGW456L13_282 are separated by 322 nucleotidesPfGW456L13_282 and PfGW456L13_283 are separated by 230 nucleotides PfGW456L13_281 - Type IV pilus biogenesis protein PilM, at 328,381 to 329,445 _281 PfGW456L13_282 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 329,768 to 332,101 _282 PfGW456L13_283 - NADP-dependent malic enzyme (EC 1.1.1.40), at 332,332 to 333,600 _283 Position (kb) 329 330 331 332 333Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 328.796 kb on + strand, within PfGW456L13_281at 328.796 kb on + strand, within PfGW456L13_281at 328.797 kb on - strand, within PfGW456L13_281at 328.797 kb on - strand, within PfGW456L13_281at 328.797 kb on - strand, within PfGW456L13_281at 328.797 kb on - strand, within PfGW456L13_281at 328.797 kb on - strand, within PfGW456L13_281at 328.800 kb on + strand, within PfGW456L13_281at 328.928 kb on + strand, within PfGW456L13_281at 329.096 kb on + strand, within PfGW456L13_281at 329.105 kb on + strand, within PfGW456L13_281at 329.105 kb on + strand, within PfGW456L13_281at 329.105 kb on + strand, within PfGW456L13_281at 329.105 kb on + strand, within PfGW456L13_281at 329.105 kb on + strand, within PfGW456L13_281at 329.106 kb on - strand, within PfGW456L13_281at 329.106 kb on - strand, within PfGW456L13_281at 329.106 kb on - strand, within PfGW456L13_281at 329.106 kb on - strand, within PfGW456L13_281at 329.106 kb on - strand, within PfGW456L13_281at 329.106 kb on - strand, within PfGW456L13_281at 329.330 kb on + strand, within PfGW456L13_281at 329.331 kb on - strand, within PfGW456L13_281at 329.331 kb on - strand, within PfGW456L13_281at 329.416 kb on - strandat 329.446 kb on + strandat 329.457 kb on + strandat 329.474 kb on + strandat 329.556 kb on - strandat 329.557 kb on + strandat 329.557 kb on + strandat 329.557 kb on + strandat 329.557 kb on + strandat 329.557 kb on + strandat 329.558 kb on - strandat 329.558 kb on - strandat 329.655 kb on + strandat 329.738 kb on + strandat 329.738 kb on + strandat 329.738 kb on + strandat 329.739 kb on - strandat 329.745 kb on - strandat 329.749 kb on + strandat 329.749 kb on + strandat 329.750 kb on - strandat 329.910 kb on + strandat 330.150 kb on - strand, within PfGW456L13_282at 330.164 kb on + strand, within PfGW456L13_282at 330.164 kb on + strand, within PfGW456L13_282at 330.164 kb on + strand, within PfGW456L13_282at 330.164 kb on + strand, within PfGW456L13_282at 330.164 kb on + strand, within PfGW456L13_282at 330.164 kb on + strand, within PfGW456L13_282at 330.164 kb on + strand, within PfGW456L13_282at 330.165 kb on - strand, within PfGW456L13_282at 330.183 kb on - strand, within PfGW456L13_282at 330.209 kb on + strand, within PfGW456L13_282at 330.209 kb on + strand, within PfGW456L13_282at 330.209 kb on + strand, within PfGW456L13_282at 330.210 kb on - strand, within PfGW456L13_282at 330.210 kb on - strand, within PfGW456L13_282at 330.210 kb on - strand, within PfGW456L13_282at 330.213 kb on - strand, within PfGW456L13_282at 330.350 kb on + strand, within PfGW456L13_282at 330.350 kb on + strand, within PfGW456L13_282at 330.350 kb on + strand, within PfGW456L13_282at 330.350 kb on + strand, within PfGW456L13_282at 330.350 kb on + strand, within PfGW456L13_282at 330.350 kb on + strand, within PfGW456L13_282at 330.351 kb on - strand, within PfGW456L13_282at 330.351 kb on - strand, within PfGW456L13_282at 330.351 kb on - strand, within PfGW456L13_282at 330.351 kb on - strand, within PfGW456L13_282at 330.351 kb on - strand, within PfGW456L13_282at 330.380 kb on + strand, within PfGW456L13_282at 330.416 kb on + strand, within PfGW456L13_282at 330.417 kb on - strand, within PfGW456L13_282at 330.417 kb on - strand, within PfGW456L13_282at 330.417 kb on - strand, within PfGW456L13_282at 330.449 kb on + strand, within PfGW456L13_282at 330.449 kb on + strand, within PfGW456L13_282at 330.449 kb on + strand, within PfGW456L13_282at 330.450 kb on - strand, within PfGW456L13_282at 330.489 kb on - strand, within PfGW456L13_282at 330.503 kb on + strand, within PfGW456L13_282at 330.503 kb on + strand, within PfGW456L13_282at 330.503 kb on + strand, within PfGW456L13_282at 330.504 kb on - strand, within PfGW456L13_282at 330.506 kb on - strand, within PfGW456L13_282at 330.738 kb on + strand, within PfGW456L13_282at 330.738 kb on + strand, within PfGW456L13_282at 330.738 kb on + strand, within PfGW456L13_282at 330.739 kb on - strand, within PfGW456L13_282at 331.004 kb on + strand, within PfGW456L13_282at 331.005 kb on - strand, within PfGW456L13_282at 331.005 kb on - strand, within PfGW456L13_282at 331.005 kb on - strand, within PfGW456L13_282at 331.137 kb on - strand, within PfGW456L13_282at 331.211 kb on + strand, within PfGW456L13_282at 331.211 kb on + strand, within PfGW456L13_282at 331.212 kb on - strand, within PfGW456L13_282at 331.212 kb on - strand, within PfGW456L13_282at 331.212 kb on - strand, within PfGW456L13_282at 331.277 kb on + strand, within PfGW456L13_282at 331.277 kb on + strand, within PfGW456L13_282at 331.277 kb on + strand, within PfGW456L13_282at 331.278 kb on - strand, within PfGW456L13_282at 331.278 kb on - strand, within PfGW456L13_282at 331.400 kb on + strand, within PfGW456L13_282at 331.401 kb on - strand, within PfGW456L13_282at 331.415 kb on + strand, within PfGW456L13_282at 331.416 kb on - strand, within PfGW456L13_282at 331.416 kb on - strand, within PfGW456L13_282at 331.571 kb on - strand, within PfGW456L13_282at 331.628 kb on + strand, within PfGW456L13_282at 331.628 kb on + strand, within PfGW456L13_282at 331.628 kb on + strand, within PfGW456L13_282at 331.628 kb on + strand, within PfGW456L13_282at 331.628 kb on + strand, within PfGW456L13_282at 331.628 kb on + strand, within PfGW456L13_282at 331.628 kb on + strand, within PfGW456L13_282at 331.628 kb on + strand, within PfGW456L13_282at 331.628 kb on + strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.629 kb on - strand, within PfGW456L13_282at 331.761 kb on - strand, within PfGW456L13_282at 331.773 kb on - strand, within PfGW456L13_282at 331.865 kb on + strand, within PfGW456L13_282at 331.865 kb on + strand, within PfGW456L13_282at 331.865 kb on + strand, within PfGW456L13_282at 331.865 kb on + strand, within PfGW456L13_282at 331.865 kb on + strand, within PfGW456L13_282at 331.865 kb on + strand, within PfGW456L13_282at 331.866 kb on - strand, within PfGW456L13_282at 331.866 kb on - strand, within PfGW456L13_282at 331.866 kb on - strand, within PfGW456L13_282at 331.866 kb on - strand, within PfGW456L13_282at 331.866 kb on - strand, within PfGW456L13_282at 331.866 kb on - strand, within PfGW456L13_282at 331.866 kb on - strand, within PfGW456L13_282at 331.900 kb on + strandat 331.901 kb on - strandat 331.985 kb on + strandat 332.011 kb on + strandat 332.012 kb on - strandat 332.116 kb on + strandat 332.116 kb on + strandat 332.116 kb on + strandat 332.116 kb on + strandat 332.116 kb on + strandat 332.116 kb on + strandat 332.117 kb on - strandat 332.117 kb on - strandat 332.117 kb on - strandat 332.117 kb on - strandat 332.117 kb on - strandat 332.117 kb on - strandat 332.134 kb on + strandat 332.134 kb on + strandat 332.134 kb on + strandat 332.134 kb on + strandat 332.134 kb on + strandat 332.135 kb on - strandat 332.207 kb on + strandat 332.251 kb on + strandat 332.252 kb on - strandat 332.252 kb on - strandat 332.252 kb on - strandat 332.252 kb on - strandat 332.252 kb on - strandat 332.324 kb on - strandat 332.477 kb on + strand, within PfGW456L13_283at 332.477 kb on + strand, within PfGW456L13_283at 332.477 kb on + strand, within PfGW456L13_283at 332.477 kb on + strand, within PfGW456L13_283at 332.478 kb on - strand, within PfGW456L13_283at 332.478 kb on - strand, within PfGW456L13_283at 332.478 kb on - strand, within PfGW456L13_283at 332.478 kb on - strand, within PfGW456L13_283at 332.478 kb on - strand, within PfGW456L13_283at 332.647 kb on + strand, within PfGW456L13_283at 332.648 kb on - strand, within PfGW456L13_283at 332.900 kb on + strand, within PfGW456L13_283at 332.900 kb on + strand, within PfGW456L13_283at 332.901 kb on - strand, within PfGW456L13_283at 332.901 kb on - strand, within PfGW456L13_283at 332.901 kb on - strand, within PfGW456L13_283at 332.901 kb on - strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.955 kb on - strand, within PfGW456L13_283at 332.955 kb on - strand, within PfGW456L13_283at 332.955 kb on - strand, within PfGW456L13_283at 332.955 kb on - strand, within PfGW456L13_283at 332.955 kb on - strand, within PfGW456L13_283at 332.955 kb on - strand, within PfGW456L13_283at 332.984 kb on - strand, within PfGW456L13_283at 332.984 kb on - strand, within PfGW456L13_283

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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328,796 + PfGW456L13_281 0.39 -0.5
328,796 + PfGW456L13_281 0.39 +0.7
328,797 - PfGW456L13_281 0.39 -0.2
328,797 - PfGW456L13_281 0.39 +0.7
328,797 - PfGW456L13_281 0.39 +1.8
328,797 - PfGW456L13_281 0.39 +0.7
328,797 - PfGW456L13_281 0.39 -1.1
328,800 + PfGW456L13_281 0.39 +0.3
328,928 + PfGW456L13_281 0.51 -1.1
329,096 + PfGW456L13_281 0.67 -0.1
329,105 + PfGW456L13_281 0.68 +1.4
329,105 + PfGW456L13_281 0.68 -1.8
329,105 + PfGW456L13_281 0.68 -0.4
329,105 + PfGW456L13_281 0.68 -1.2
329,105 + PfGW456L13_281 0.68 -0.1
329,106 - PfGW456L13_281 0.68 +0.3
329,106 - PfGW456L13_281 0.68 +1.2
329,106 - PfGW456L13_281 0.68 -0.1
329,106 - PfGW456L13_281 0.68 +0.2
329,106 - PfGW456L13_281 0.68 +1.6
329,106 - PfGW456L13_281 0.68 -0.7
329,330 + PfGW456L13_281 0.89 +0.7
329,331 - PfGW456L13_281 0.89 +0.1
329,331 - PfGW456L13_281 0.89 -0.5
329,416 - -0.7
329,446 + +0.2
329,457 + -0.5
329,474 + -0.8
329,556 - -0.7
329,557 + -0.1
329,557 + +1.1
329,557 + -0.2
329,557 + -0.5
329,557 + -1.2
329,558 - -2.2
329,558 - -2.1
329,655 + -0.9
329,738 + -2.7
329,738 + -2.5
329,738 + -2.8
329,739 - -2.0
329,745 - -0.9
329,749 + -2.8
329,749 + -3.2
329,750 - +1.1
329,910 + -2.3
330,150 - PfGW456L13_282 0.16 +0.1
330,164 + PfGW456L13_282 0.17 -2.3
330,164 + PfGW456L13_282 0.17 -1.9
330,164 + PfGW456L13_282 0.17 -3.9
330,164 + PfGW456L13_282 0.17 -3.8
330,164 + PfGW456L13_282 0.17 -2.1
330,164 + PfGW456L13_282 0.17 -2.5
330,164 + PfGW456L13_282 0.17 -2.3
330,165 - PfGW456L13_282 0.17 -1.5
330,183 - PfGW456L13_282 0.18 -3.0
330,209 + PfGW456L13_282 0.19 -2.6
330,209 + PfGW456L13_282 0.19 -2.8
330,209 + PfGW456L13_282 0.19 -1.1
330,210 - PfGW456L13_282 0.19 -0.9
330,210 - PfGW456L13_282 0.19 -0.5
330,210 - PfGW456L13_282 0.19 -2.2
330,213 - PfGW456L13_282 0.19 -0.9
330,350 + PfGW456L13_282 0.25 -3.1
330,350 + PfGW456L13_282 0.25 -1.2
330,350 + PfGW456L13_282 0.25 -3.2
330,350 + PfGW456L13_282 0.25 -1.1
330,350 + PfGW456L13_282 0.25 -2.4
330,350 + PfGW456L13_282 0.25 -0.9
330,351 - PfGW456L13_282 0.25 -0.9
330,351 - PfGW456L13_282 0.25 -2.2
330,351 - PfGW456L13_282 0.25 -2.3
330,351 - PfGW456L13_282 0.25 -1.3
330,351 - PfGW456L13_282 0.25 -1.5
330,380 + PfGW456L13_282 0.26 -1.5
330,416 + PfGW456L13_282 0.28 -2.3
330,417 - PfGW456L13_282 0.28 -1.8
330,417 - PfGW456L13_282 0.28 -3.2
330,417 - PfGW456L13_282 0.28 -2.7
330,449 + PfGW456L13_282 0.29 -0.5
330,449 + PfGW456L13_282 0.29 -2.3
330,449 + PfGW456L13_282 0.29 -2.7
330,450 - PfGW456L13_282 0.29 -2.1
330,489 - PfGW456L13_282 0.31 +0.1
330,503 + PfGW456L13_282 0.31 -1.6
330,503 + PfGW456L13_282 0.31 -2.6
330,503 + PfGW456L13_282 0.31 -2.5
330,504 - PfGW456L13_282 0.32 -1.5
330,506 - PfGW456L13_282 0.32 -2.9
330,738 + PfGW456L13_282 0.42 -1.7
330,738 + PfGW456L13_282 0.42 -1.8
330,738 + PfGW456L13_282 0.42 -2.8
330,739 - PfGW456L13_282 0.42 -2.1
331,004 + PfGW456L13_282 0.53 -2.4
331,005 - PfGW456L13_282 0.53 -3.3
331,005 - PfGW456L13_282 0.53 -1.5
331,005 - PfGW456L13_282 0.53 -2.6
331,137 - PfGW456L13_282 0.59 -1.8
331,211 + PfGW456L13_282 0.62 -1.6
331,211 + PfGW456L13_282 0.62 -2.0
331,212 - PfGW456L13_282 0.62 -2.0
331,212 - PfGW456L13_282 0.62 -3.4
331,212 - PfGW456L13_282 0.62 -0.2
331,277 + PfGW456L13_282 0.65 -0.2
331,277 + PfGW456L13_282 0.65 -1.2
331,277 + PfGW456L13_282 0.65 -2.0
331,278 - PfGW456L13_282 0.65 -1.7
331,278 - PfGW456L13_282 0.65 -2.7
331,400 + PfGW456L13_282 0.70 -0.2
331,401 - PfGW456L13_282 0.70 -2.4
331,415 + PfGW456L13_282 0.71 -2.6
331,416 - PfGW456L13_282 0.71 -2.1
331,416 - PfGW456L13_282 0.71 -2.1
331,571 - PfGW456L13_282 0.77 -1.2
331,628 + PfGW456L13_282 0.80 -0.7
331,628 + PfGW456L13_282 0.80 +2.7
331,628 + PfGW456L13_282 0.80 -2.8
331,628 + PfGW456L13_282 0.80 -2.7
331,628 + PfGW456L13_282 0.80 -1.6
331,628 + PfGW456L13_282 0.80 -4.1
331,628 + PfGW456L13_282 0.80 -1.1
331,628 + PfGW456L13_282 0.80 -3.3
331,628 + PfGW456L13_282 0.80 -2.1
331,629 - PfGW456L13_282 0.80 -3.1
331,629 - PfGW456L13_282 0.80 -1.8
331,629 - PfGW456L13_282 0.80 -2.8
331,629 - PfGW456L13_282 0.80 -1.5
331,629 - PfGW456L13_282 0.80 -2.2
331,629 - PfGW456L13_282 0.80 -1.9
331,629 - PfGW456L13_282 0.80 -1.7
331,629 - PfGW456L13_282 0.80 -1.7
331,629 - PfGW456L13_282 0.80 -2.5
331,629 - PfGW456L13_282 0.80 -2.6
331,629 - PfGW456L13_282 0.80 -1.1
331,629 - PfGW456L13_282 0.80 -2.0
331,629 - PfGW456L13_282 0.80 -2.1
331,629 - PfGW456L13_282 0.80 -1.9
331,629 - PfGW456L13_282 0.80 -2.7
331,761 - PfGW456L13_282 0.85 -2.2
331,773 - PfGW456L13_282 0.86 -3.1
331,865 + PfGW456L13_282 0.90 -3.2
331,865 + PfGW456L13_282 0.90 -2.3
331,865 + PfGW456L13_282 0.90 -2.6
331,865 + PfGW456L13_282 0.90 -2.3
331,865 + PfGW456L13_282 0.90 -1.9
331,865 + PfGW456L13_282 0.90 -2.3
331,866 - PfGW456L13_282 0.90 -1.1
331,866 - PfGW456L13_282 0.90 +1.2
331,866 - PfGW456L13_282 0.90 -0.5
331,866 - PfGW456L13_282 0.90 -2.4
331,866 - PfGW456L13_282 0.90 -2.2
331,866 - PfGW456L13_282 0.90 -2.1
331,866 - PfGW456L13_282 0.90 -0.5
331,900 + -2.1
331,901 - -2.5
331,985 + -2.6
332,011 + +0.8
332,012 - -2.2
332,116 + -0.2
332,116 + -1.0
332,116 + +0.2
332,116 + +1.0
332,116 + -1.7
332,116 + -0.7
332,117 - -0.0
332,117 - +0.6
332,117 - -1.0
332,117 - +0.7
332,117 - -0.3
332,117 - +1.0
332,134 + +1.8
332,134 + -0.2
332,134 + -0.5
332,134 + +1.3
332,134 + -0.2
332,135 - +1.5
332,207 + +0.2
332,251 + -0.0
332,252 - -1.7
332,252 - -0.6
332,252 - -0.4
332,252 - -0.1
332,252 - +0.5
332,324 - +0.8
332,477 + PfGW456L13_283 0.11 +0.5
332,477 + PfGW456L13_283 0.11 +2.6
332,477 + PfGW456L13_283 0.11 -2.1
332,477 + PfGW456L13_283 0.11 +1.1
332,478 - PfGW456L13_283 0.12 -0.8
332,478 - PfGW456L13_283 0.12 +0.5
332,478 - PfGW456L13_283 0.12 +0.2
332,478 - PfGW456L13_283 0.12 -0.6
332,478 - PfGW456L13_283 0.12 -2.3
332,647 + PfGW456L13_283 0.25 -0.7
332,648 - PfGW456L13_283 0.25 +0.4
332,900 + PfGW456L13_283 0.45 -1.8
332,900 + PfGW456L13_283 0.45 -0.1
332,901 - PfGW456L13_283 0.45 -0.7
332,901 - PfGW456L13_283 0.45 +0.6
332,901 - PfGW456L13_283 0.45 -0.5
332,901 - PfGW456L13_283 0.45 -1.1
332,954 + PfGW456L13_283 0.49 -1.8
332,954 + PfGW456L13_283 0.49 -1.1
332,954 + PfGW456L13_283 0.49 +0.2
332,954 + PfGW456L13_283 0.49 +0.7
332,954 + PfGW456L13_283 0.49 +0.5
332,954 + PfGW456L13_283 0.49 +1.5
332,954 + PfGW456L13_283 0.49 +0.4
332,954 + PfGW456L13_283 0.49 -0.2
332,954 + PfGW456L13_283 0.49 +0.4
332,954 + PfGW456L13_283 0.49 +0.3
332,954 + PfGW456L13_283 0.49 -0.7
332,955 - PfGW456L13_283 0.49 +0.4
332,955 - PfGW456L13_283 0.49 -0.7
332,955 - PfGW456L13_283 0.49 +0.0
332,955 - PfGW456L13_283 0.49 +0.2
332,955 - PfGW456L13_283 0.49 -0.1
332,955 - PfGW456L13_283 0.49 +1.5
332,984 - PfGW456L13_283 0.51 -1.8
332,984 - PfGW456L13_283 0.51 -1.3

Or see this region's nucleotide sequence