Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2550

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2549 and PfGW456L13_2550 are separated by 235 nucleotidesPfGW456L13_2550 and PfGW456L13_5204 are separated by 274 nucleotidesPfGW456L13_5204 and PfGW456L13_5205 are separated by 35 nucleotidesPfGW456L13_5205 and PfGW456L13_5206 are separated by 59 nucleotidesPfGW456L13_5206 and PfGW456L13_5207 are separated by 80 nucleotides PfGW456L13_2549 - Murein-DD-endopeptidase (EC 3.4.99.-), at 2,815,691 to 2,816,629 _2549 PfGW456L13_2550 - Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9), at 2,816,865 to 2,817,719 _2550 PfGW456L13_5204 - tRNA-Arg-TCT, at 2,817,994 to 2,818,067 _5204 PfGW456L13_5205 - tRNA-His-GTG, at 2,818,103 to 2,818,175 _5205 PfGW456L13_5206 - tRNA-Leu-TAG, at 2,818,235 to 2,818,316 _5206 PfGW456L13_5207 - tRNA-His-GTG, at 2,818,397 to 2,818,469 _5207 Position (kb) 2816 2817 2818Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2815.998 kb on + strand, within PfGW456L13_2549at 2815.998 kb on + strand, within PfGW456L13_2549at 2815.998 kb on + strand, within PfGW456L13_2549at 2815.999 kb on - strand, within PfGW456L13_2549at 2815.999 kb on - strand, within PfGW456L13_2549at 2815.999 kb on - strand, within PfGW456L13_2549at 2816.038 kb on + strand, within PfGW456L13_2549at 2816.038 kb on + strand, within PfGW456L13_2549at 2816.038 kb on + strand, within PfGW456L13_2549at 2816.038 kb on + strand, within PfGW456L13_2549at 2816.039 kb on - strand, within PfGW456L13_2549at 2816.039 kb on - strand, within PfGW456L13_2549at 2816.039 kb on - strand, within PfGW456L13_2549at 2816.061 kb on + strand, within PfGW456L13_2549at 2816.061 kb on + strand, within PfGW456L13_2549at 2816.062 kb on - strand, within PfGW456L13_2549at 2816.090 kb on + strand, within PfGW456L13_2549at 2816.090 kb on + strand, within PfGW456L13_2549at 2816.091 kb on - strand, within PfGW456L13_2549at 2816.205 kb on + strand, within PfGW456L13_2549at 2816.205 kb on + strand, within PfGW456L13_2549at 2816.206 kb on - strand, within PfGW456L13_2549at 2816.319 kb on + strand, within PfGW456L13_2549at 2816.320 kb on - strand, within PfGW456L13_2549at 2816.320 kb on - strand, within PfGW456L13_2549at 2816.364 kb on + strand, within PfGW456L13_2549at 2816.364 kb on + strand, within PfGW456L13_2549at 2816.364 kb on + strand, within PfGW456L13_2549at 2816.364 kb on + strand, within PfGW456L13_2549at 2816.364 kb on + strand, within PfGW456L13_2549at 2816.364 kb on + strand, within PfGW456L13_2549at 2816.365 kb on - strand, within PfGW456L13_2549at 2816.365 kb on - strand, within PfGW456L13_2549at 2816.365 kb on - strand, within PfGW456L13_2549at 2816.460 kb on + strand, within PfGW456L13_2549at 2816.460 kb on + strand, within PfGW456L13_2549at 2816.460 kb on + strand, within PfGW456L13_2549at 2816.460 kb on + strand, within PfGW456L13_2549at 2816.460 kb on + strand, within PfGW456L13_2549at 2816.461 kb on - strand, within PfGW456L13_2549at 2816.461 kb on - strand, within PfGW456L13_2549at 2816.461 kb on - strand, within PfGW456L13_2549at 2816.461 kb on - strand, within PfGW456L13_2549at 2816.461 kb on - strand, within PfGW456L13_2549at 2816.528 kb on - strand, within PfGW456L13_2549at 2816.601 kb on - strandat 2816.623 kb on + strandat 2816.643 kb on + strandat 2816.644 kb on - strandat 2816.654 kb on + strandat 2816.654 kb on + strandat 2816.654 kb on + strandat 2816.655 kb on - strandat 2816.666 kb on + strandat 2816.703 kb on + strandat 2816.703 kb on + strandat 2816.735 kb on + strandat 2818.199 kb on + strandat 2818.322 kb on + strandat 2818.322 kb on + strandat 2818.322 kb on + strandat 2818.322 kb on + strandat 2818.473 kb on + strandat 2818.473 kb on + strandat 2818.562 kb on + strandat 2818.562 kb on + strandat 2818.563 kb on - strandat 2818.563 kb on - strandat 2818.566 kb on + strandat 2818.566 kb on + strandat 2818.566 kb on + strandat 2818.566 kb on + strandat 2818.567 kb on - strandat 2818.567 kb on - strandat 2818.646 kb on + strandat 2818.646 kb on + strandat 2818.646 kb on + strandat 2818.646 kb on + strandat 2818.646 kb on + strandat 2818.646 kb on + strandat 2818.646 kb on + strandat 2818.646 kb on + strandat 2818.646 kb on + strandat 2818.646 kb on + strandat 2818.646 kb on + strandat 2818.646 kb on + strandat 2818.646 kb on + strandat 2818.646 kb on + strandat 2818.646 kb on + strandat 2818.646 kb on + strandat 2818.646 kb on + strandat 2818.646 kb on + strandat 2818.646 kb on + strandat 2818.646 kb on + strandat 2818.647 kb on - strandat 2818.647 kb on - strandat 2818.647 kb on - strandat 2818.647 kb on - strandat 2818.647 kb on - strandat 2818.647 kb on - strandat 2818.647 kb on - strandat 2818.647 kb on - strandat 2818.647 kb on - strandat 2818.647 kb on - strandat 2818.647 kb on - strandat 2818.647 kb on - strandat 2818.647 kb on - strandat 2818.647 kb on - strandat 2818.647 kb on - strandat 2818.647 kb on - strandat 2818.647 kb on - strandat 2818.647 kb on - strandat 2818.647 kb on - strandat 2818.647 kb on - strandat 2818.647 kb on - strandat 2818.647 kb on - strandat 2818.647 kb on - strandat 2818.648 kb on + strandat 2818.648 kb on + strandat 2818.649 kb on - strandat 2818.649 kb on - strandat 2818.649 kb on - strandat 2818.650 kb on + strandat 2818.650 kb on + strandat 2818.650 kb on + strandat 2818.651 kb on - strandat 2818.689 kb on + strandat 2818.689 kb on + strandat 2818.689 kb on + strandat 2818.689 kb on + strandat 2818.689 kb on + strandat 2818.689 kb on + strandat 2818.689 kb on + strandat 2818.689 kb on + strandat 2818.690 kb on - strandat 2818.690 kb on - strandat 2818.690 kb on - strandat 2818.690 kb on - strandat 2818.690 kb on - strandat 2818.690 kb on - strandat 2818.690 kb on - strandat 2818.690 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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2,815,998 + PfGW456L13_2549 0.33 +0.9
2,815,998 + PfGW456L13_2549 0.33 +0.5
2,815,998 + PfGW456L13_2549 0.33 +1.3
2,815,999 - PfGW456L13_2549 0.33 +1.1
2,815,999 - PfGW456L13_2549 0.33 +0.9
2,815,999 - PfGW456L13_2549 0.33 +0.6
2,816,038 + PfGW456L13_2549 0.37 +1.1
2,816,038 + PfGW456L13_2549 0.37 +0.1
2,816,038 + PfGW456L13_2549 0.37 +0.3
2,816,038 + PfGW456L13_2549 0.37 +0.3
2,816,039 - PfGW456L13_2549 0.37 +0.1
2,816,039 - PfGW456L13_2549 0.37 +0.3
2,816,039 - PfGW456L13_2549 0.37 +0.4
2,816,061 + PfGW456L13_2549 0.39 +0.7
2,816,061 + PfGW456L13_2549 0.39 -0.4
2,816,062 - PfGW456L13_2549 0.40 +1.1
2,816,090 + PfGW456L13_2549 0.42 +1.6
2,816,090 + PfGW456L13_2549 0.42 +0.2
2,816,091 - PfGW456L13_2549 0.43 +0.8
2,816,205 + PfGW456L13_2549 0.55 -0.1
2,816,205 + PfGW456L13_2549 0.55 -0.2
2,816,206 - PfGW456L13_2549 0.55 +0.7
2,816,319 + PfGW456L13_2549 0.67 +0.3
2,816,320 - PfGW456L13_2549 0.67 -3.4
2,816,320 - PfGW456L13_2549 0.67 +0.4
2,816,364 + PfGW456L13_2549 0.72 -0.1
2,816,364 + PfGW456L13_2549 0.72 -0.1
2,816,364 + PfGW456L13_2549 0.72 -0.4
2,816,364 + PfGW456L13_2549 0.72 +0.4
2,816,364 + PfGW456L13_2549 0.72 +0.2
2,816,364 + PfGW456L13_2549 0.72 +0.4
2,816,365 - PfGW456L13_2549 0.72 +0.6
2,816,365 - PfGW456L13_2549 0.72 +0.9
2,816,365 - PfGW456L13_2549 0.72 +1.6
2,816,460 + PfGW456L13_2549 0.82 +0.6
2,816,460 + PfGW456L13_2549 0.82 -0.5
2,816,460 + PfGW456L13_2549 0.82 +2.3
2,816,460 + PfGW456L13_2549 0.82 -1.7
2,816,460 + PfGW456L13_2549 0.82 -0.7
2,816,461 - PfGW456L13_2549 0.82 +1.1
2,816,461 - PfGW456L13_2549 0.82 +1.2
2,816,461 - PfGW456L13_2549 0.82 +0.0
2,816,461 - PfGW456L13_2549 0.82 +1.1
2,816,461 - PfGW456L13_2549 0.82 +0.8
2,816,528 - PfGW456L13_2549 0.89 +1.2
2,816,601 - +0.9
2,816,623 + -1.1
2,816,643 + -1.2
2,816,644 - -0.4
2,816,654 + +1.7
2,816,654 + +0.4
2,816,654 + +1.0
2,816,655 - -0.3
2,816,666 + +0.3
2,816,703 + +1.1
2,816,703 + -1.6
2,816,735 + -0.8
2,818,199 + -1.6
2,818,322 + +0.6
2,818,322 + -0.1
2,818,322 + +1.3
2,818,322 + +0.5
2,818,473 + +0.3
2,818,473 + +0.6
2,818,562 + +0.9
2,818,562 + +0.9
2,818,563 - +1.6
2,818,563 - +1.8
2,818,566 + +0.6
2,818,566 + +0.3
2,818,566 + +0.6
2,818,566 + +1.9
2,818,567 - +0.7
2,818,567 - -0.1
2,818,646 + -0.9
2,818,646 + +1.2
2,818,646 + +1.1
2,818,646 + +0.0
2,818,646 + -1.6
2,818,646 + +0.3
2,818,646 + +0.3
2,818,646 + +0.6
2,818,646 + -0.1
2,818,646 + -0.4
2,818,646 + -0.5
2,818,646 + -1.0
2,818,646 + -0.2
2,818,646 + +0.2
2,818,646 + +0.5
2,818,646 + -0.9
2,818,646 + -1.0
2,818,646 + +0.1
2,818,646 + +0.1
2,818,646 + +0.4
2,818,647 - +1.0
2,818,647 - +0.2
2,818,647 - +0.3
2,818,647 - +0.6
2,818,647 - +0.6
2,818,647 - -0.3
2,818,647 - +0.3
2,818,647 - +0.1
2,818,647 - -0.3
2,818,647 - +0.1
2,818,647 - +0.3
2,818,647 - -0.7
2,818,647 - +1.2
2,818,647 - +0.3
2,818,647 - +0.3
2,818,647 - -2.0
2,818,647 - +0.8
2,818,647 - -1.3
2,818,647 - +0.9
2,818,647 - +0.9
2,818,647 - +0.8
2,818,647 - +1.8
2,818,647 - -1.5
2,818,648 + -0.9
2,818,648 + -0.0
2,818,649 - +0.1
2,818,649 - +0.2
2,818,649 - +0.8
2,818,650 + +0.5
2,818,650 + +0.9
2,818,650 + -0.2
2,818,651 - +0.3
2,818,689 + -0.3
2,818,689 + +0.8
2,818,689 + +1.3
2,818,689 + -0.4
2,818,689 + -0.3
2,818,689 + +0.9
2,818,689 + -0.1
2,818,689 + -0.1
2,818,690 - +0.8
2,818,690 - +0.4
2,818,690 - +1.0
2,818,690 - +1.2
2,818,690 - +0.8
2,818,690 - -0.9
2,818,690 - +0.6
2,818,690 - +0.6

Or see this region's nucleotide sequence