Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_198

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_197 and PfGW456L13_198 overlap by 1 nucleotidesPfGW456L13_198 and PfGW456L13_199 are separated by 66 nucleotidesPfGW456L13_199 and PfGW456L13_200 overlap by 4 nucleotides PfGW456L13_197 - Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase, at 224,958 to 226,820 _197 PfGW456L13_198 - acyltransferase family protein, at 226,820 to 228,043 _198 PfGW456L13_199 - alpha-1,3-rhamnosyltransferase, at 228,110 to 228,994 _199 PfGW456L13_200 - Glycosyl transferase in large core OS assembly cluster, at 228,991 to 230,145 _200 Position (kb) 226 227 228 229Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 226.769 kb on + strandat 226.770 kb on - strandat 226.857 kb on - strandat 226.971 kb on - strand, within PfGW456L13_198at 226.971 kb on - strand, within PfGW456L13_198at 227.009 kb on - strand, within PfGW456L13_198at 227.009 kb on - strand, within PfGW456L13_198at 227.060 kb on + strand, within PfGW456L13_198at 227.061 kb on - strand, within PfGW456L13_198at 227.061 kb on - strand, within PfGW456L13_198at 227.201 kb on + strand, within PfGW456L13_198at 227.201 kb on + strand, within PfGW456L13_198at 227.202 kb on - strand, within PfGW456L13_198at 227.240 kb on + strand, within PfGW456L13_198at 227.241 kb on - strand, within PfGW456L13_198at 227.333 kb on + strand, within PfGW456L13_198at 227.333 kb on + strand, within PfGW456L13_198at 227.396 kb on + strand, within PfGW456L13_198at 227.477 kb on + strand, within PfGW456L13_198at 227.477 kb on + strand, within PfGW456L13_198at 227.477 kb on + strand, within PfGW456L13_198at 227.477 kb on + strand, within PfGW456L13_198at 227.477 kb on + strand, within PfGW456L13_198at 227.477 kb on + strand, within PfGW456L13_198at 227.477 kb on + strand, within PfGW456L13_198at 227.477 kb on + strand, within PfGW456L13_198at 227.477 kb on + strand, within PfGW456L13_198at 227.477 kb on + strand, within PfGW456L13_198at 227.477 kb on + strand, within PfGW456L13_198at 227.477 kb on + strand, within PfGW456L13_198at 227.477 kb on + strand, within PfGW456L13_198at 227.477 kb on + strand, within PfGW456L13_198at 227.478 kb on - strand, within PfGW456L13_198at 227.478 kb on - strand, within PfGW456L13_198at 227.478 kb on - strand, within PfGW456L13_198at 227.478 kb on - strand, within PfGW456L13_198at 227.478 kb on - strand, within PfGW456L13_198at 227.478 kb on - strand, within PfGW456L13_198at 227.478 kb on - strand, within PfGW456L13_198at 227.478 kb on - strand, within PfGW456L13_198at 227.478 kb on - strand, within PfGW456L13_198at 227.478 kb on - strand, within PfGW456L13_198at 227.478 kb on - strand, within PfGW456L13_198at 227.478 kb on - strand, within PfGW456L13_198at 227.478 kb on - strand, within PfGW456L13_198at 227.478 kb on - strand, within PfGW456L13_198at 227.480 kb on - strand, within PfGW456L13_198at 227.480 kb on - strand, within PfGW456L13_198at 227.561 kb on + strand, within PfGW456L13_198at 227.561 kb on + strand, within PfGW456L13_198at 227.647 kb on + strand, within PfGW456L13_198at 227.725 kb on + strand, within PfGW456L13_198at 227.725 kb on + strand, within PfGW456L13_198at 227.725 kb on + strand, within PfGW456L13_198at 227.725 kb on + strand, within PfGW456L13_198at 227.725 kb on + strand, within PfGW456L13_198at 227.726 kb on - strand, within PfGW456L13_198at 227.726 kb on - strand, within PfGW456L13_198at 227.726 kb on - strand, within PfGW456L13_198at 227.781 kb on - strandat 227.781 kb on - strand, within PfGW456L13_198at 227.789 kb on + strand, within PfGW456L13_198at 227.789 kb on + strand, within PfGW456L13_198at 227.789 kb on + strand, within PfGW456L13_198at 227.789 kb on + strand, within PfGW456L13_198at 227.789 kb on + strand, within PfGW456L13_198at 227.790 kb on - strand, within PfGW456L13_198at 227.790 kb on - strand, within PfGW456L13_198at 227.930 kb on + strandat 227.931 kb on - strandat 227.936 kb on + strandat 227.936 kb on + strandat 227.936 kb on + strandat 227.936 kb on + strandat 227.936 kb on + strandat 227.936 kb on + strandat 227.937 kb on - strandat 227.937 kb on - strandat 227.937 kb on - strandat 227.937 kb on - strandat 228.135 kb on + strandat 228.135 kb on + strandat 228.135 kb on + strandat 228.135 kb on + strandat 228.136 kb on - strandat 228.136 kb on - strandat 228.136 kb on - strandat 228.136 kb on - strandat 228.261 kb on + strand, within PfGW456L13_199at 228.262 kb on - strand, within PfGW456L13_199at 228.276 kb on + strand, within PfGW456L13_199at 228.277 kb on - strand, within PfGW456L13_199at 228.277 kb on - strand, within PfGW456L13_199at 228.303 kb on + strand, within PfGW456L13_199at 228.303 kb on + strand, within PfGW456L13_199at 228.304 kb on - strand, within PfGW456L13_199at 228.345 kb on + strand, within PfGW456L13_199at 228.346 kb on - strand, within PfGW456L13_199at 228.346 kb on - strand, within PfGW456L13_199at 228.405 kb on + strand, within PfGW456L13_199at 228.406 kb on - strand, within PfGW456L13_199at 228.406 kb on - strand, within PfGW456L13_199at 228.406 kb on - strand, within PfGW456L13_199at 228.509 kb on - strand, within PfGW456L13_199at 228.897 kb on + strand, within PfGW456L13_199at 228.898 kb on - strand, within PfGW456L13_199at 228.898 kb on - strand, within PfGW456L13_199at 228.936 kb on + strandat 228.936 kb on + strandat 228.936 kb on + strandat 228.936 kb on + strandat 228.936 kb on + strandat 228.936 kb on + strandat 228.936 kb on + strandat 228.936 kb on + strandat 228.936 kb on + strandat 228.937 kb on - strandat 228.937 kb on - strandat 228.937 kb on - strandat 228.937 kb on - strandat 228.951 kb on + strandat 228.952 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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226,769 + +0.3
226,770 - -1.9
226,857 - -0.5
226,971 - PfGW456L13_198 0.12 -2.2
226,971 - PfGW456L13_198 0.12 -0.3
227,009 - PfGW456L13_198 0.15 -1.0
227,009 - PfGW456L13_198 0.15 -0.2
227,060 + PfGW456L13_198 0.20 +0.1
227,061 - PfGW456L13_198 0.20 -0.3
227,061 - PfGW456L13_198 0.20 -1.1
227,201 + PfGW456L13_198 0.31 -1.8
227,201 + PfGW456L13_198 0.31 -3.0
227,202 - PfGW456L13_198 0.31 -0.2
227,240 + PfGW456L13_198 0.34 -2.6
227,241 - PfGW456L13_198 0.34 -0.2
227,333 + PfGW456L13_198 0.42 -0.5
227,333 + PfGW456L13_198 0.42 -2.0
227,396 + PfGW456L13_198 0.47 +0.2
227,477 + PfGW456L13_198 0.54 -3.3
227,477 + PfGW456L13_198 0.54 -0.7
227,477 + PfGW456L13_198 0.54 -2.9
227,477 + PfGW456L13_198 0.54 +0.3
227,477 + PfGW456L13_198 0.54 -0.5
227,477 + PfGW456L13_198 0.54 -0.2
227,477 + PfGW456L13_198 0.54 -1.9
227,477 + PfGW456L13_198 0.54 -1.9
227,477 + PfGW456L13_198 0.54 +0.1
227,477 + PfGW456L13_198 0.54 -2.1
227,477 + PfGW456L13_198 0.54 -1.8
227,477 + PfGW456L13_198 0.54 -0.1
227,477 + PfGW456L13_198 0.54 -1.5
227,477 + PfGW456L13_198 0.54 -2.1
227,478 - PfGW456L13_198 0.54 -2.0
227,478 - PfGW456L13_198 0.54 -0.8
227,478 - PfGW456L13_198 0.54 -2.7
227,478 - PfGW456L13_198 0.54 -1.8
227,478 - PfGW456L13_198 0.54 -0.5
227,478 - PfGW456L13_198 0.54 -2.1
227,478 - PfGW456L13_198 0.54 -2.6
227,478 - PfGW456L13_198 0.54 -0.7
227,478 - PfGW456L13_198 0.54 -1.9
227,478 - PfGW456L13_198 0.54 -3.4
227,478 - PfGW456L13_198 0.54 -1.7
227,478 - PfGW456L13_198 0.54 -0.3
227,478 - PfGW456L13_198 0.54 -0.2
227,478 - PfGW456L13_198 0.54 +0.2
227,480 - PfGW456L13_198 0.54 -2.0
227,480 - PfGW456L13_198 0.54 -1.4
227,561 + PfGW456L13_198 0.61 +0.1
227,561 + PfGW456L13_198 0.61 -3.0
227,647 + PfGW456L13_198 0.68 -2.1
227,725 + PfGW456L13_198 0.74 -2.3
227,725 + PfGW456L13_198 0.74 -0.3
227,725 + PfGW456L13_198 0.74 -2.0
227,725 + PfGW456L13_198 0.74 -0.5
227,725 + PfGW456L13_198 0.74 -0.2
227,726 - PfGW456L13_198 0.74 -1.4
227,726 - PfGW456L13_198 0.74 -1.0
227,726 - PfGW456L13_198 0.74 -1.4
227,781 - +2.5
227,781 - PfGW456L13_198 0.79 -0.6
227,789 + PfGW456L13_198 0.79 -2.6
227,789 + PfGW456L13_198 0.79 -0.4
227,789 + PfGW456L13_198 0.79 -3.1
227,789 + PfGW456L13_198 0.79 -2.0
227,789 + PfGW456L13_198 0.79 -1.0
227,790 - PfGW456L13_198 0.79 -0.2
227,790 - PfGW456L13_198 0.79 +0.5
227,930 + -2.4
227,931 - +0.1
227,936 + -0.5
227,936 + -1.3
227,936 + -0.8
227,936 + -2.0
227,936 + +0.9
227,936 + -1.6
227,937 - -2.0
227,937 - -2.8
227,937 - -0.2
227,937 - -1.7
228,135 + +1.5
228,135 + +0.3
228,135 + +1.1
228,135 + +0.7
228,136 - +0.1
228,136 - +1.4
228,136 - +2.1
228,136 - +1.7
228,261 + PfGW456L13_199 0.17 +0.8
228,262 - PfGW456L13_199 0.17 +2.1
228,276 + PfGW456L13_199 0.19 +3.5
228,277 - PfGW456L13_199 0.19 +0.8
228,277 - PfGW456L13_199 0.19 +1.6
228,303 + PfGW456L13_199 0.22 -0.2
228,303 + PfGW456L13_199 0.22 +0.4
228,304 - PfGW456L13_199 0.22 +1.3
228,345 + PfGW456L13_199 0.27 +2.3
228,346 - PfGW456L13_199 0.27 +3.2
228,346 - PfGW456L13_199 0.27 +0.4
228,405 + PfGW456L13_199 0.33 +1.8
228,406 - PfGW456L13_199 0.33 +1.6
228,406 - PfGW456L13_199 0.33 +1.5
228,406 - PfGW456L13_199 0.33 +2.0
228,509 - PfGW456L13_199 0.45 +1.5
228,897 + PfGW456L13_199 0.89 +1.4
228,898 - PfGW456L13_199 0.89 +1.6
228,898 - PfGW456L13_199 0.89 +1.9
228,936 + +1.3
228,936 + +2.5
228,936 + +2.1
228,936 + +2.3
228,936 + +2.4
228,936 + +1.0
228,936 + +3.4
228,936 + +2.3
228,936 + +2.6
228,937 - +1.8
228,937 - +1.8
228,937 - +1.5
228,937 - +1.7
228,951 + +1.7
228,952 - +1.9

Or see this region's nucleotide sequence