Experiment: D-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_1723 and PfGW456L13_1724 are separated by 66 nucleotides PfGW456L13_1724 and PfGW456L13_1725 are separated by 119 nucleotides
PfGW456L13_1723 - Homoserine dehydrogenase (EC 1.1.1.3), at 1,897,909 to 1,899,213
_1723
PfGW456L13_1724 - Threonine synthase (EC 4.2.3.1), at 1,899,280 to 1,900,689
_1724
PfGW456L13_1725 - virulence sensor protein, at 1,900,809 to 1,902,164
_1725
Position (kb)
1899
1900
1901 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1899.211 kb on + strand at 1899.211 kb on + strand at 1899.211 kb on + strand at 1899.211 kb on + strand at 1900.704 kb on + strand at 1900.765 kb on - strand at 1900.817 kb on + strand at 1900.817 kb on + strand at 1900.817 kb on + strand at 1900.817 kb on + strand at 1900.817 kb on + strand at 1900.817 kb on + strand at 1900.817 kb on + strand at 1900.818 kb on - strand at 1900.818 kb on - strand at 1900.818 kb on - strand at 1900.818 kb on - strand at 1900.818 kb on - strand at 1900.818 kb on - strand at 1901.011 kb on - strand, within PfGW456L13_1725 at 1901.019 kb on + strand, within PfGW456L13_1725 at 1901.019 kb on + strand, within PfGW456L13_1725 at 1901.020 kb on - strand, within PfGW456L13_1725 at 1901.174 kb on + strand, within PfGW456L13_1725 at 1901.175 kb on - strand, within PfGW456L13_1725 at 1901.175 kb on - strand, within PfGW456L13_1725 at 1901.175 kb on - strand, within PfGW456L13_1725 at 1901.309 kb on - strand, within PfGW456L13_1725 at 1901.391 kb on + strand, within PfGW456L13_1725 at 1901.392 kb on - strand, within PfGW456L13_1725 at 1901.430 kb on + strand, within PfGW456L13_1725 at 1901.431 kb on - strand, within PfGW456L13_1725 at 1901.465 kb on + strand, within PfGW456L13_1725 at 1901.466 kb on - strand, within PfGW456L13_1725 at 1901.466 kb on - strand, within PfGW456L13_1725 at 1901.466 kb on - strand, within PfGW456L13_1725 at 1901.523 kb on + strand, within PfGW456L13_1725 at 1901.524 kb on - strand, within PfGW456L13_1725 at 1901.524 kb on - strand, within PfGW456L13_1725 at 1901.524 kb on - strand, within PfGW456L13_1725 at 1901.561 kb on + strand, within PfGW456L13_1725 at 1901.561 kb on + strand, within PfGW456L13_1725 at 1901.561 kb on + strand, within PfGW456L13_1725 at 1901.562 kb on - strand, within PfGW456L13_1725 at 1901.562 kb on - strand, within PfGW456L13_1725
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (N) remove 1,899,211 + -0.4 1,899,211 + -1.5 1,899,211 + -3.2 1,899,211 + +0.3 1,900,704 + +0.1 1,900,765 - +1.3 1,900,817 + -1.7 1,900,817 + +0.1 1,900,817 + +0.2 1,900,817 + -0.0 1,900,817 + -0.5 1,900,817 + -2.7 1,900,817 + -1.5 1,900,818 - -0.0 1,900,818 - -0.6 1,900,818 - -0.3 1,900,818 - +0.4 1,900,818 - +0.3 1,900,818 - -1.1 1,901,011 - PfGW456L13_1725 0.15 -0.5 1,901,019 + PfGW456L13_1725 0.15 -0.1 1,901,019 + PfGW456L13_1725 0.15 +2.6 1,901,020 - PfGW456L13_1725 0.16 +0.9 1,901,174 + PfGW456L13_1725 0.27 +0.9 1,901,175 - PfGW456L13_1725 0.27 +1.0 1,901,175 - PfGW456L13_1725 0.27 -0.7 1,901,175 - PfGW456L13_1725 0.27 -0.2 1,901,309 - PfGW456L13_1725 0.37 +0.5 1,901,391 + PfGW456L13_1725 0.43 +0.2 1,901,392 - PfGW456L13_1725 0.43 -0.5 1,901,430 + PfGW456L13_1725 0.46 +0.0 1,901,431 - PfGW456L13_1725 0.46 +0.2 1,901,465 + PfGW456L13_1725 0.48 +0.8 1,901,466 - PfGW456L13_1725 0.48 +0.1 1,901,466 - PfGW456L13_1725 0.48 +0.3 1,901,466 - PfGW456L13_1725 0.48 +1.1 1,901,523 + PfGW456L13_1725 0.53 +0.2 1,901,524 - PfGW456L13_1725 0.53 -0.8 1,901,524 - PfGW456L13_1725 0.53 -0.3 1,901,524 - PfGW456L13_1725 0.53 -0.9 1,901,561 + PfGW456L13_1725 0.55 +0.3 1,901,561 + PfGW456L13_1725 0.55 +0.5 1,901,561 + PfGW456L13_1725 0.55 -0.5 1,901,562 - PfGW456L13_1725 0.56 -0.5 1,901,562 - PfGW456L13_1725 0.56 +1.6
Or see this region's nucleotide sequence