Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1724

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1723 and PfGW456L13_1724 are separated by 66 nucleotidesPfGW456L13_1724 and PfGW456L13_1725 are separated by 119 nucleotides PfGW456L13_1723 - Homoserine dehydrogenase (EC 1.1.1.3), at 1,897,909 to 1,899,213 _1723 PfGW456L13_1724 - Threonine synthase (EC 4.2.3.1), at 1,899,280 to 1,900,689 _1724 PfGW456L13_1725 - virulence sensor protein, at 1,900,809 to 1,902,164 _1725 Position (kb) 1899 1900 1901Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1899.211 kb on + strandat 1899.211 kb on + strandat 1899.211 kb on + strandat 1899.211 kb on + strandat 1900.704 kb on + strandat 1900.765 kb on - strandat 1900.817 kb on + strandat 1900.817 kb on + strandat 1900.817 kb on + strandat 1900.817 kb on + strandat 1900.817 kb on + strandat 1900.817 kb on + strandat 1900.817 kb on + strandat 1900.818 kb on - strandat 1900.818 kb on - strandat 1900.818 kb on - strandat 1900.818 kb on - strandat 1900.818 kb on - strandat 1900.818 kb on - strandat 1901.011 kb on - strand, within PfGW456L13_1725at 1901.019 kb on + strand, within PfGW456L13_1725at 1901.019 kb on + strand, within PfGW456L13_1725at 1901.020 kb on - strand, within PfGW456L13_1725at 1901.174 kb on + strand, within PfGW456L13_1725at 1901.175 kb on - strand, within PfGW456L13_1725at 1901.175 kb on - strand, within PfGW456L13_1725at 1901.175 kb on - strand, within PfGW456L13_1725at 1901.309 kb on - strand, within PfGW456L13_1725at 1901.391 kb on + strand, within PfGW456L13_1725at 1901.392 kb on - strand, within PfGW456L13_1725at 1901.430 kb on + strand, within PfGW456L13_1725at 1901.431 kb on - strand, within PfGW456L13_1725at 1901.465 kb on + strand, within PfGW456L13_1725at 1901.466 kb on - strand, within PfGW456L13_1725at 1901.466 kb on - strand, within PfGW456L13_1725at 1901.466 kb on - strand, within PfGW456L13_1725at 1901.523 kb on + strand, within PfGW456L13_1725at 1901.524 kb on - strand, within PfGW456L13_1725at 1901.524 kb on - strand, within PfGW456L13_1725at 1901.524 kb on - strand, within PfGW456L13_1725at 1901.561 kb on + strand, within PfGW456L13_1725at 1901.561 kb on + strand, within PfGW456L13_1725at 1901.561 kb on + strand, within PfGW456L13_1725at 1901.562 kb on - strand, within PfGW456L13_1725at 1901.562 kb on - strand, within PfGW456L13_1725

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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1,899,211 + -0.4
1,899,211 + -1.5
1,899,211 + -3.2
1,899,211 + +0.3
1,900,704 + +0.1
1,900,765 - +1.3
1,900,817 + -1.7
1,900,817 + +0.1
1,900,817 + +0.2
1,900,817 + -0.0
1,900,817 + -0.5
1,900,817 + -2.7
1,900,817 + -1.5
1,900,818 - -0.0
1,900,818 - -0.6
1,900,818 - -0.3
1,900,818 - +0.4
1,900,818 - +0.3
1,900,818 - -1.1
1,901,011 - PfGW456L13_1725 0.15 -0.5
1,901,019 + PfGW456L13_1725 0.15 -0.1
1,901,019 + PfGW456L13_1725 0.15 +2.6
1,901,020 - PfGW456L13_1725 0.16 +0.9
1,901,174 + PfGW456L13_1725 0.27 +0.9
1,901,175 - PfGW456L13_1725 0.27 +1.0
1,901,175 - PfGW456L13_1725 0.27 -0.7
1,901,175 - PfGW456L13_1725 0.27 -0.2
1,901,309 - PfGW456L13_1725 0.37 +0.5
1,901,391 + PfGW456L13_1725 0.43 +0.2
1,901,392 - PfGW456L13_1725 0.43 -0.5
1,901,430 + PfGW456L13_1725 0.46 +0.0
1,901,431 - PfGW456L13_1725 0.46 +0.2
1,901,465 + PfGW456L13_1725 0.48 +0.8
1,901,466 - PfGW456L13_1725 0.48 +0.1
1,901,466 - PfGW456L13_1725 0.48 +0.3
1,901,466 - PfGW456L13_1725 0.48 +1.1
1,901,523 + PfGW456L13_1725 0.53 +0.2
1,901,524 - PfGW456L13_1725 0.53 -0.8
1,901,524 - PfGW456L13_1725 0.53 -0.3
1,901,524 - PfGW456L13_1725 0.53 -0.9
1,901,561 + PfGW456L13_1725 0.55 +0.3
1,901,561 + PfGW456L13_1725 0.55 +0.5
1,901,561 + PfGW456L13_1725 0.55 -0.5
1,901,562 - PfGW456L13_1725 0.56 -0.5
1,901,562 - PfGW456L13_1725 0.56 +1.6

Or see this region's nucleotide sequence