Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1518

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1517 and PfGW456L13_1518 are separated by 231 nucleotidesPfGW456L13_1518 and PfGW456L13_1519 are separated by 224 nucleotidesPfGW456L13_1519 and PfGW456L13_1520 are separated by 234 nucleotides PfGW456L13_1517 - Acetyl-coenzyme A synthetase (EC 6.2.1.1), at 1,666,845 to 1,668,782 _1517 PfGW456L13_1518 - Glucose-6-phosphate isomerase (EC 5.3.1.9), at 1,669,014 to 1,670,678 _1518 PfGW456L13_1519 - Aspartate 1-decarboxylase (EC 4.1.1.11), at 1,670,903 to 1,671,283 _1519 PfGW456L13_1520 - Pantoate--beta-alanine ligase (EC 6.3.2.1), at 1,671,518 to 1,672,378 _1520 Position (kb) 1669 1670 1671Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1668.083 kb on - strand, within PfGW456L13_1517at 1668.083 kb on - strand, within PfGW456L13_1517at 1668.304 kb on - strand, within PfGW456L13_1517at 1668.373 kb on + strand, within PfGW456L13_1517at 1668.373 kb on + strand, within PfGW456L13_1517at 1668.373 kb on + strand, within PfGW456L13_1517at 1668.373 kb on + strand, within PfGW456L13_1517at 1668.373 kb on + strand, within PfGW456L13_1517at 1668.373 kb on + strand, within PfGW456L13_1517at 1668.373 kb on + strand, within PfGW456L13_1517at 1668.373 kb on + strand, within PfGW456L13_1517at 1668.373 kb on + strand, within PfGW456L13_1517at 1668.374 kb on - strand, within PfGW456L13_1517at 1668.374 kb on - strand, within PfGW456L13_1517at 1668.374 kb on - strand, within PfGW456L13_1517at 1668.374 kb on - strand, within PfGW456L13_1517at 1668.374 kb on - strand, within PfGW456L13_1517at 1668.374 kb on - strand, within PfGW456L13_1517at 1668.374 kb on - strand, within PfGW456L13_1517at 1668.374 kb on - strand, within PfGW456L13_1517at 1668.374 kb on - strand, within PfGW456L13_1517at 1668.374 kb on - strand, within PfGW456L13_1517at 1668.374 kb on - strand, within PfGW456L13_1517at 1668.374 kb on - strand, within PfGW456L13_1517at 1668.374 kb on - strand, within PfGW456L13_1517at 1668.374 kb on - strand, within PfGW456L13_1517at 1668.457 kb on + strand, within PfGW456L13_1517at 1668.543 kb on - strand, within PfGW456L13_1517at 1668.550 kb on + strand, within PfGW456L13_1517at 1668.550 kb on + strand, within PfGW456L13_1517at 1668.550 kb on + strand, within PfGW456L13_1517at 1668.550 kb on + strand, within PfGW456L13_1517at 1668.551 kb on - strand, within PfGW456L13_1517at 1668.551 kb on - strand, within PfGW456L13_1517at 1668.551 kb on - strand, within PfGW456L13_1517at 1668.551 kb on - strand, within PfGW456L13_1517at 1668.551 kb on - strand, within PfGW456L13_1517at 1668.607 kb on + strandat 1668.608 kb on - strandat 1668.712 kb on + strandat 1668.793 kb on + strandat 1668.793 kb on + strandat 1668.793 kb on + strandat 1668.794 kb on - strandat 1668.815 kb on + strandat 1668.852 kb on + strandat 1668.853 kb on - strandat 1668.853 kb on - strandat 1668.853 kb on - strandat 1668.853 kb on - strandat 1669.007 kb on + strandat 1670.695 kb on - strandat 1670.698 kb on - strandat 1670.698 kb on - strandat 1670.792 kb on + strandat 1670.792 kb on + strandat 1670.792 kb on + strandat 1670.792 kb on + strandat 1670.793 kb on - strandat 1670.793 kb on - strandat 1670.798 kb on - strandat 1670.798 kb on - strandat 1670.798 kb on - strandat 1670.854 kb on - strandat 1670.865 kb on + strandat 1670.901 kb on + strandat 1670.902 kb on - strandat 1670.902 kb on - strandat 1670.964 kb on + strand, within PfGW456L13_1519at 1670.964 kb on + strand, within PfGW456L13_1519at 1670.964 kb on + strand, within PfGW456L13_1519at 1670.964 kb on + strand, within PfGW456L13_1519at 1670.964 kb on + strand, within PfGW456L13_1519at 1670.964 kb on + strand, within PfGW456L13_1519at 1670.964 kb on + strand, within PfGW456L13_1519at 1670.964 kb on + strand, within PfGW456L13_1519at 1670.964 kb on + strand, within PfGW456L13_1519at 1670.964 kb on + strand, within PfGW456L13_1519at 1670.964 kb on + strand, within PfGW456L13_1519at 1670.964 kb on + strand, within PfGW456L13_1519at 1670.964 kb on + strand, within PfGW456L13_1519at 1670.964 kb on + strand, within PfGW456L13_1519at 1670.964 kb on + strand, within PfGW456L13_1519at 1670.964 kb on + strand, within PfGW456L13_1519at 1670.964 kb on + strand, within PfGW456L13_1519at 1670.965 kb on - strand, within PfGW456L13_1519at 1670.965 kb on - strand, within PfGW456L13_1519at 1670.965 kb on - strand, within PfGW456L13_1519at 1670.965 kb on - strand, within PfGW456L13_1519at 1670.965 kb on - strand, within PfGW456L13_1519at 1670.965 kb on - strand, within PfGW456L13_1519at 1670.965 kb on - strand, within PfGW456L13_1519at 1670.965 kb on - strand, within PfGW456L13_1519at 1671.006 kb on + strand, within PfGW456L13_1519at 1671.007 kb on - strand, within PfGW456L13_1519at 1671.007 kb on - strand, within PfGW456L13_1519at 1671.007 kb on - strand, within PfGW456L13_1519at 1671.015 kb on + strand, within PfGW456L13_1519at 1671.111 kb on + strand, within PfGW456L13_1519at 1671.111 kb on + strand, within PfGW456L13_1519at 1671.111 kb on + strand, within PfGW456L13_1519at 1671.111 kb on + strand, within PfGW456L13_1519at 1671.111 kb on + strand, within PfGW456L13_1519at 1671.112 kb on - strand, within PfGW456L13_1519at 1671.112 kb on - strand, within PfGW456L13_1519at 1671.112 kb on - strand, within PfGW456L13_1519at 1671.112 kb on - strand, within PfGW456L13_1519at 1671.112 kb on - strand, within PfGW456L13_1519at 1671.112 kb on - strand, within PfGW456L13_1519at 1671.144 kb on + strand, within PfGW456L13_1519at 1671.145 kb on - strand, within PfGW456L13_1519at 1671.145 kb on - strand, within PfGW456L13_1519at 1671.145 kb on - strand, within PfGW456L13_1519at 1671.145 kb on - strand, within PfGW456L13_1519at 1671.162 kb on + strand, within PfGW456L13_1519at 1671.163 kb on - strand, within PfGW456L13_1519at 1671.163 kb on - strand, within PfGW456L13_1519at 1671.219 kb on + strand, within PfGW456L13_1519at 1671.220 kb on - strand, within PfGW456L13_1519at 1671.227 kb on + strand, within PfGW456L13_1519at 1671.227 kb on + strand, within PfGW456L13_1519at 1671.287 kb on + strandat 1671.287 kb on + strandat 1671.287 kb on + strandat 1671.288 kb on - strandat 1671.288 kb on - strandat 1671.288 kb on - strandat 1671.288 kb on - strandat 1671.288 kb on - strandat 1671.346 kb on + strandat 1671.346 kb on + strandat 1671.346 kb on + strandat 1671.346 kb on + strandat 1671.347 kb on - strandat 1671.373 kb on + strandat 1671.374 kb on - strandat 1671.413 kb on - strandat 1671.519 kb on + strandat 1671.520 kb on - strandat 1671.568 kb on + strandat 1671.654 kb on + strand, within PfGW456L13_1520

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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1,668,083 - PfGW456L13_1517 0.64 -2.2
1,668,083 - PfGW456L13_1517 0.64 -2.0
1,668,304 - PfGW456L13_1517 0.75 +0.1
1,668,373 + PfGW456L13_1517 0.79 +0.1
1,668,373 + PfGW456L13_1517 0.79 -2.0
1,668,373 + PfGW456L13_1517 0.79 +1.0
1,668,373 + PfGW456L13_1517 0.79 +1.2
1,668,373 + PfGW456L13_1517 0.79 +1.1
1,668,373 + PfGW456L13_1517 0.79 +0.4
1,668,373 + PfGW456L13_1517 0.79 +0.5
1,668,373 + PfGW456L13_1517 0.79 -0.2
1,668,373 + PfGW456L13_1517 0.79 +1.0
1,668,374 - PfGW456L13_1517 0.79 -1.1
1,668,374 - PfGW456L13_1517 0.79 +0.2
1,668,374 - PfGW456L13_1517 0.79 +0.2
1,668,374 - PfGW456L13_1517 0.79 -1.1
1,668,374 - PfGW456L13_1517 0.79 -0.7
1,668,374 - PfGW456L13_1517 0.79 -1.7
1,668,374 - PfGW456L13_1517 0.79 +0.2
1,668,374 - PfGW456L13_1517 0.79 -1.7
1,668,374 - PfGW456L13_1517 0.79 +0.3
1,668,374 - PfGW456L13_1517 0.79 +0.4
1,668,374 - PfGW456L13_1517 0.79 -1.7
1,668,374 - PfGW456L13_1517 0.79 +0.4
1,668,374 - PfGW456L13_1517 0.79 -0.2
1,668,374 - PfGW456L13_1517 0.79 +0.3
1,668,457 + PfGW456L13_1517 0.83 -0.8
1,668,543 - PfGW456L13_1517 0.88 +1.8
1,668,550 + PfGW456L13_1517 0.88 +1.3
1,668,550 + PfGW456L13_1517 0.88 -0.9
1,668,550 + PfGW456L13_1517 0.88 -0.0
1,668,550 + PfGW456L13_1517 0.88 -0.5
1,668,551 - PfGW456L13_1517 0.88 +0.4
1,668,551 - PfGW456L13_1517 0.88 +1.5
1,668,551 - PfGW456L13_1517 0.88 +1.1
1,668,551 - PfGW456L13_1517 0.88 +0.4
1,668,551 - PfGW456L13_1517 0.88 +0.3
1,668,607 + +0.3
1,668,608 - +1.6
1,668,712 + +0.5
1,668,793 + -0.8
1,668,793 + -0.3
1,668,793 + +0.4
1,668,794 - +0.8
1,668,815 + +0.5
1,668,852 + -1.1
1,668,853 - -0.3
1,668,853 - -1.0
1,668,853 - +0.3
1,668,853 - +0.6
1,669,007 + +0.8
1,670,695 - +0.1
1,670,698 - -2.2
1,670,698 - +0.2
1,670,792 + -1.7
1,670,792 + -0.6
1,670,792 + -1.2
1,670,792 + -0.7
1,670,793 - +0.6
1,670,793 - -0.6
1,670,798 - -0.2
1,670,798 - +0.1
1,670,798 - +0.3
1,670,854 - +0.4
1,670,865 + -0.6
1,670,901 + -2.1
1,670,902 - +0.6
1,670,902 - -2.8
1,670,964 + PfGW456L13_1519 0.16 +0.5
1,670,964 + PfGW456L13_1519 0.16 +0.9
1,670,964 + PfGW456L13_1519 0.16 +0.7
1,670,964 + PfGW456L13_1519 0.16 +0.2
1,670,964 + PfGW456L13_1519 0.16 +1.4
1,670,964 + PfGW456L13_1519 0.16 +1.0
1,670,964 + PfGW456L13_1519 0.16 +0.5
1,670,964 + PfGW456L13_1519 0.16 +0.1
1,670,964 + PfGW456L13_1519 0.16 +0.3
1,670,964 + PfGW456L13_1519 0.16 +0.7
1,670,964 + PfGW456L13_1519 0.16 -0.3
1,670,964 + PfGW456L13_1519 0.16 +0.9
1,670,964 + PfGW456L13_1519 0.16 -0.2
1,670,964 + PfGW456L13_1519 0.16 -1.3
1,670,964 + PfGW456L13_1519 0.16 +0.2
1,670,964 + PfGW456L13_1519 0.16 -0.4
1,670,964 + PfGW456L13_1519 0.16 -0.9
1,670,965 - PfGW456L13_1519 0.16 +0.3
1,670,965 - PfGW456L13_1519 0.16 +0.9
1,670,965 - PfGW456L13_1519 0.16 -0.8
1,670,965 - PfGW456L13_1519 0.16 +0.0
1,670,965 - PfGW456L13_1519 0.16 +0.5
1,670,965 - PfGW456L13_1519 0.16 -0.5
1,670,965 - PfGW456L13_1519 0.16 +0.5
1,670,965 - PfGW456L13_1519 0.16 -1.6
1,671,006 + PfGW456L13_1519 0.27 +0.5
1,671,007 - PfGW456L13_1519 0.27 -0.3
1,671,007 - PfGW456L13_1519 0.27 -0.9
1,671,007 - PfGW456L13_1519 0.27 +1.3
1,671,015 + PfGW456L13_1519 0.29 +1.3
1,671,111 + PfGW456L13_1519 0.55 +1.4
1,671,111 + PfGW456L13_1519 0.55 +0.9
1,671,111 + PfGW456L13_1519 0.55 -2.2
1,671,111 + PfGW456L13_1519 0.55 +0.2
1,671,111 + PfGW456L13_1519 0.55 +0.5
1,671,112 - PfGW456L13_1519 0.55 +0.2
1,671,112 - PfGW456L13_1519 0.55 -0.2
1,671,112 - PfGW456L13_1519 0.55 +0.3
1,671,112 - PfGW456L13_1519 0.55 -0.7
1,671,112 - PfGW456L13_1519 0.55 -0.1
1,671,112 - PfGW456L13_1519 0.55 +1.5
1,671,144 + PfGW456L13_1519 0.63 +0.0
1,671,145 - PfGW456L13_1519 0.64 +0.8
1,671,145 - PfGW456L13_1519 0.64 +0.7
1,671,145 - PfGW456L13_1519 0.64 -2.1
1,671,145 - PfGW456L13_1519 0.64 +0.5
1,671,162 + PfGW456L13_1519 0.68 +0.2
1,671,163 - PfGW456L13_1519 0.68 +0.0
1,671,163 - PfGW456L13_1519 0.68 -0.4
1,671,219 + PfGW456L13_1519 0.83 +1.2
1,671,220 - PfGW456L13_1519 0.83 +2.3
1,671,227 + PfGW456L13_1519 0.85 +0.6
1,671,227 + PfGW456L13_1519 0.85 +0.2
1,671,287 + -0.6
1,671,287 + -0.7
1,671,287 + +1.0
1,671,288 - -0.7
1,671,288 - -0.0
1,671,288 - +0.5
1,671,288 - +0.6
1,671,288 - -0.0
1,671,346 + +1.2
1,671,346 + +0.8
1,671,346 + +0.3
1,671,346 + +1.2
1,671,347 - +0.6
1,671,373 + -0.3
1,671,374 - +0.8
1,671,413 - +1.6
1,671,519 + +0.2
1,671,520 - +0.8
1,671,568 + +0.9
1,671,654 + PfGW456L13_1520 0.16 -1.7

Or see this region's nucleotide sequence