Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1326

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1325 and PfGW456L13_1326 are separated by 91 nucleotidesPfGW456L13_1326 and PfGW456L13_1327 overlap by 4 nucleotidesPfGW456L13_1327 and PfGW456L13_1328 are separated by 409 nucleotides PfGW456L13_1325 - 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7), at 1,463,841 to 1,465,739 _1325 PfGW456L13_1326 - Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29), at 1,465,831 to 1,466,718 _1326 PfGW456L13_1327 - Exodeoxyribonuclease VII small subunit (EC 3.1.11.6), at 1,466,715 to 1,466,957 _1327 PfGW456L13_1328 - Probable signal peptide protein, at 1,467,367 to 1,468,155 _1328 Position (kb) 1465 1466 1467Strain fitness (log2 ratio) -2 -1 0 1 2at 1465.753 kb on - strandat 1465.755 kb on - strandat 1465.755 kb on - strandat 1465.755 kb on - strandat 1465.755 kb on - strandat 1465.755 kb on - strandat 1465.755 kb on - strandat 1465.755 kb on - strandat 1465.755 kb on - strandat 1465.755 kb on - strandat 1465.755 kb on - strandat 1465.755 kb on - strandat 1465.755 kb on - strandat 1465.755 kb on - strandat 1465.755 kb on - strandat 1465.755 kb on - strandat 1465.755 kb on - strandat 1465.755 kb on - strandat 1465.755 kb on - strandat 1465.759 kb on - strandat 1465.759 kb on - strandat 1465.759 kb on - strandat 1465.759 kb on - strandat 1465.761 kb on - strandat 1465.761 kb on - strandat 1467.003 kb on + strandat 1467.054 kb on - strandat 1467.054 kb on - strandat 1467.094 kb on + strandat 1467.147 kb on + strandat 1467.148 kb on - strandat 1467.148 kb on - strandat 1467.260 kb on + strandat 1467.261 kb on - strandat 1467.261 kb on - strandat 1467.261 kb on - strandat 1467.313 kb on + strandat 1467.313 kb on + strandat 1467.313 kb on + strandat 1467.314 kb on - strandat 1467.314 kb on - strandat 1467.631 kb on + strand, within PfGW456L13_1328at 1467.631 kb on + strand, within PfGW456L13_1328at 1467.631 kb on + strand, within PfGW456L13_1328at 1467.631 kb on + strand, within PfGW456L13_1328at 1467.632 kb on - strand, within PfGW456L13_1328at 1467.632 kb on - strand, within PfGW456L13_1328at 1467.632 kb on - strand, within PfGW456L13_1328at 1467.632 kb on - strand, within PfGW456L13_1328at 1467.632 kb on - strand, within PfGW456L13_1328at 1467.632 kb on - strand, within PfGW456L13_1328at 1467.634 kb on - strand, within PfGW456L13_1328at 1467.665 kb on - strand, within PfGW456L13_1328

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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1,465,753 - +0.9
1,465,755 - -0.2
1,465,755 - -0.9
1,465,755 - +1.3
1,465,755 - -1.1
1,465,755 - +0.4
1,465,755 - -0.8
1,465,755 - -0.4
1,465,755 - -1.3
1,465,755 - -0.3
1,465,755 - +1.8
1,465,755 - +1.4
1,465,755 - +0.4
1,465,755 - +0.3
1,465,755 - +0.2
1,465,755 - +1.3
1,465,755 - -0.6
1,465,755 - +1.0
1,465,755 - +0.3
1,465,759 - +0.4
1,465,759 - -0.6
1,465,759 - +2.3
1,465,759 - +0.0
1,465,761 - +0.5
1,465,761 - +2.0
1,467,003 + -0.8
1,467,054 - +1.1
1,467,054 - +0.2
1,467,094 + +0.7
1,467,147 + -2.0
1,467,148 - +0.3
1,467,148 - +0.2
1,467,260 + -0.8
1,467,261 - +0.5
1,467,261 - -1.7
1,467,261 - +0.8
1,467,313 + +1.0
1,467,313 + -0.3
1,467,313 + +0.1
1,467,314 - -0.6
1,467,314 - -0.7
1,467,631 + PfGW456L13_1328 0.33 +1.9
1,467,631 + PfGW456L13_1328 0.33 -1.3
1,467,631 + PfGW456L13_1328 0.33 -0.2
1,467,631 + PfGW456L13_1328 0.33 +1.5
1,467,632 - PfGW456L13_1328 0.34 +1.1
1,467,632 - PfGW456L13_1328 0.34 -0.2
1,467,632 - PfGW456L13_1328 0.34 -0.4
1,467,632 - PfGW456L13_1328 0.34 -0.6
1,467,632 - PfGW456L13_1328 0.34 -0.2
1,467,632 - PfGW456L13_1328 0.34 -0.7
1,467,634 - PfGW456L13_1328 0.34 -0.6
1,467,665 - PfGW456L13_1328 0.38 -0.1

Or see this region's nucleotide sequence