Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1069

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1066 and PfGW456L13_1067 are separated by 35 nucleotidesPfGW456L13_1067 and PfGW456L13_1068 are separated by 56 nucleotidesPfGW456L13_1068 and PfGW456L13_1069 are separated by 220 nucleotidesPfGW456L13_1069 and PfGW456L13_1070 are separated by 193 nucleotides PfGW456L13_1066 - Phosphoglycerate kinase (EC 2.7.2.3), at 1,181,723 to 1,182,886 _1066 PfGW456L13_1067 - FIG00955006: hypothetical protein, at 1,182,922 to 1,183,143 _1067 PfGW456L13_1068 - Lipoprotein, putative, at 1,183,200 to 1,183,529 _1068 PfGW456L13_1069 - Fructose-bisphosphate aldolase class II (EC 4.1.2.13), at 1,183,750 to 1,184,814 _1069 PfGW456L13_1070 - Alginate lyase precursor (EC 4.2.2.3), at 1,185,008 to 1,185,676 _1070 Position (kb) 1183 1184 1185Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1183.102 kb on + strand, within PfGW456L13_1067at 1183.102 kb on + strand, within PfGW456L13_1067at 1183.102 kb on + strand, within PfGW456L13_1067at 1183.103 kb on - strand, within PfGW456L13_1067at 1183.103 kb on - strand, within PfGW456L13_1067at 1183.159 kb on - strandat 1183.211 kb on + strandat 1183.212 kb on - strandat 1183.335 kb on + strand, within PfGW456L13_1068at 1183.335 kb on + strand, within PfGW456L13_1068at 1183.352 kb on + strand, within PfGW456L13_1068at 1183.393 kb on - strand, within PfGW456L13_1068at 1183.431 kb on + strand, within PfGW456L13_1068at 1183.431 kb on + strand, within PfGW456L13_1068at 1183.432 kb on - strand, within PfGW456L13_1068at 1183.432 kb on - strand, within PfGW456L13_1068at 1183.432 kb on - strand, within PfGW456L13_1068at 1183.459 kb on + strand, within PfGW456L13_1068at 1183.459 kb on + strand, within PfGW456L13_1068at 1183.459 kb on + strand, within PfGW456L13_1068at 1183.459 kb on + strand, within PfGW456L13_1068at 1183.459 kb on + strand, within PfGW456L13_1068at 1183.459 kb on + strand, within PfGW456L13_1068at 1183.460 kb on - strand, within PfGW456L13_1068at 1183.483 kb on - strand, within PfGW456L13_1068at 1183.571 kb on + strandat 1183.621 kb on + strandat 1183.621 kb on + strandat 1183.636 kb on + strandat 1183.678 kb on + strandat 1184.770 kb on + strandat 1184.812 kb on + strandat 1184.812 kb on + strandat 1184.812 kb on + strandat 1184.812 kb on + strandat 1184.813 kb on - strandat 1184.813 kb on - strandat 1184.942 kb on + strandat 1184.943 kb on - strandat 1184.943 kb on - strandat 1184.943 kb on - strandat 1184.943 kb on - strandat 1184.958 kb on + strandat 1184.959 kb on - strandat 1185.067 kb on - strandat 1185.083 kb on + strand, within PfGW456L13_1070at 1185.083 kb on + strand, within PfGW456L13_1070at 1185.083 kb on + strand, within PfGW456L13_1070at 1185.083 kb on + strand, within PfGW456L13_1070at 1185.083 kb on + strand, within PfGW456L13_1070at 1185.084 kb on - strand, within PfGW456L13_1070at 1185.084 kb on - strand, within PfGW456L13_1070at 1185.084 kb on - strand, within PfGW456L13_1070at 1185.084 kb on - strand, within PfGW456L13_1070at 1185.084 kb on - strand, within PfGW456L13_1070at 1185.087 kb on + strand, within PfGW456L13_1070at 1185.087 kb on + strand, within PfGW456L13_1070at 1185.087 kb on + strand, within PfGW456L13_1070at 1185.087 kb on + strand, within PfGW456L13_1070at 1185.087 kb on + strand, within PfGW456L13_1070at 1185.087 kb on + strand, within PfGW456L13_1070at 1185.087 kb on + strand, within PfGW456L13_1070at 1185.088 kb on - strand, within PfGW456L13_1070at 1185.088 kb on - strand, within PfGW456L13_1070at 1185.088 kb on - strand, within PfGW456L13_1070at 1185.088 kb on - strandat 1185.088 kb on - strand, within PfGW456L13_1070at 1185.106 kb on - strand, within PfGW456L13_1070at 1185.204 kb on + strand, within PfGW456L13_1070at 1185.204 kb on + strand, within PfGW456L13_1070at 1185.204 kb on + strand, within PfGW456L13_1070at 1185.204 kb on + strand, within PfGW456L13_1070at 1185.204 kb on + strand, within PfGW456L13_1070at 1185.204 kb on + strand, within PfGW456L13_1070at 1185.204 kb on + strand, within PfGW456L13_1070at 1185.205 kb on - strand, within PfGW456L13_1070at 1185.205 kb on - strand, within PfGW456L13_1070at 1185.205 kb on - strand, within PfGW456L13_1070at 1185.205 kb on - strand, within PfGW456L13_1070at 1185.205 kb on - strand, within PfGW456L13_1070at 1185.205 kb on - strand, within PfGW456L13_1070at 1185.205 kb on - strand, within PfGW456L13_1070at 1185.260 kb on - strand, within PfGW456L13_1070at 1185.295 kb on + strand, within PfGW456L13_1070at 1185.327 kb on + strand, within PfGW456L13_1070at 1185.327 kb on + strand, within PfGW456L13_1070at 1185.328 kb on - strand, within PfGW456L13_1070at 1185.328 kb on - strand, within PfGW456L13_1070at 1185.328 kb on - strand, within PfGW456L13_1070at 1185.328 kb on - strand, within PfGW456L13_1070at 1185.328 kb on - strand, within PfGW456L13_1070at 1185.360 kb on + strand, within PfGW456L13_1070at 1185.361 kb on - strand, within PfGW456L13_1070at 1185.401 kb on + strand, within PfGW456L13_1070at 1185.426 kb on + strand, within PfGW456L13_1070at 1185.426 kb on + strand, within PfGW456L13_1070at 1185.426 kb on + strand, within PfGW456L13_1070at 1185.426 kb on + strand, within PfGW456L13_1070at 1185.426 kb on + strand, within PfGW456L13_1070at 1185.426 kb on + strand, within PfGW456L13_1070at 1185.426 kb on + strand, within PfGW456L13_1070at 1185.426 kb on + strand, within PfGW456L13_1070at 1185.426 kb on + strand, within PfGW456L13_1070at 1185.426 kb on + strand, within PfGW456L13_1070at 1185.426 kb on + strand, within PfGW456L13_1070at 1185.426 kb on + strand, within PfGW456L13_1070at 1185.426 kb on + strand, within PfGW456L13_1070at 1185.426 kb on + strand, within PfGW456L13_1070at 1185.427 kb on - strand, within PfGW456L13_1070at 1185.427 kb on - strand, within PfGW456L13_1070at 1185.427 kb on - strand, within PfGW456L13_1070at 1185.427 kb on - strand, within PfGW456L13_1070at 1185.427 kb on - strand, within PfGW456L13_1070at 1185.427 kb on - strand, within PfGW456L13_1070at 1185.427 kb on - strand, within PfGW456L13_1070at 1185.453 kb on + strand, within PfGW456L13_1070at 1185.454 kb on - strand, within PfGW456L13_1070at 1185.469 kb on + strand, within PfGW456L13_1070at 1185.469 kb on + strand, within PfGW456L13_1070at 1185.469 kb on + strand, within PfGW456L13_1070at 1185.470 kb on - strand, within PfGW456L13_1070at 1185.470 kb on - strand, within PfGW456L13_1070at 1185.470 kb on - strand, within PfGW456L13_1070at 1185.480 kb on + strand, within PfGW456L13_1070at 1185.480 kb on + strand, within PfGW456L13_1070at 1185.481 kb on - strand, within PfGW456L13_1070at 1185.500 kb on - strand, within PfGW456L13_1070at 1185.507 kb on + strand, within PfGW456L13_1070at 1185.508 kb on - strand, within PfGW456L13_1070at 1185.579 kb on + strand, within PfGW456L13_1070at 1185.579 kb on + strand, within PfGW456L13_1070at 1185.579 kb on + strand, within PfGW456L13_1070at 1185.579 kb on + strand, within PfGW456L13_1070at 1185.579 kb on + strand, within PfGW456L13_1070at 1185.579 kb on + strand, within PfGW456L13_1070at 1185.579 kb on + strand, within PfGW456L13_1070at 1185.579 kb on + strand, within PfGW456L13_1070at 1185.579 kb on + strand, within PfGW456L13_1070at 1185.579 kb on + strand, within PfGW456L13_1070at 1185.580 kb on - strand, within PfGW456L13_1070at 1185.580 kb on - strand, within PfGW456L13_1070at 1185.580 kb on - strand, within PfGW456L13_1070at 1185.580 kb on - strand, within PfGW456L13_1070at 1185.580 kb on - strand, within PfGW456L13_1070at 1185.580 kb on - strand, within PfGW456L13_1070at 1185.580 kb on - strand, within PfGW456L13_1070at 1185.580 kb on - strand, within PfGW456L13_1070at 1185.580 kb on - strand, within PfGW456L13_1070at 1185.580 kb on - strand, within PfGW456L13_1070at 1185.625 kb on - strandat 1185.625 kb on - strandat 1185.625 kb on - strandat 1185.625 kb on - strandat 1185.750 kb on + strandat 1185.750 kb on + strandat 1185.750 kb on + strandat 1185.750 kb on + strandat 1185.751 kb on - strandat 1185.751 kb on - strandat 1185.752 kb on + strandat 1185.752 kb on + strandat 1185.753 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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1,183,102 + PfGW456L13_1067 0.81 -0.6
1,183,102 + PfGW456L13_1067 0.81 -0.6
1,183,102 + PfGW456L13_1067 0.81 -1.2
1,183,103 - PfGW456L13_1067 0.82 -2.1
1,183,103 - PfGW456L13_1067 0.82 -0.7
1,183,159 - -0.8
1,183,211 + -0.1
1,183,212 - -0.0
1,183,335 + PfGW456L13_1068 0.41 +0.2
1,183,335 + PfGW456L13_1068 0.41 -0.8
1,183,352 + PfGW456L13_1068 0.46 -0.1
1,183,393 - PfGW456L13_1068 0.58 +0.4
1,183,431 + PfGW456L13_1068 0.70 -0.7
1,183,431 + PfGW456L13_1068 0.70 -0.6
1,183,432 - PfGW456L13_1068 0.70 -0.6
1,183,432 - PfGW456L13_1068 0.70 -1.2
1,183,432 - PfGW456L13_1068 0.70 -0.0
1,183,459 + PfGW456L13_1068 0.78 -1.0
1,183,459 + PfGW456L13_1068 0.78 +1.9
1,183,459 + PfGW456L13_1068 0.78 +0.7
1,183,459 + PfGW456L13_1068 0.78 +0.2
1,183,459 + PfGW456L13_1068 0.78 -1.9
1,183,459 + PfGW456L13_1068 0.78 +0.4
1,183,460 - PfGW456L13_1068 0.79 +0.2
1,183,483 - PfGW456L13_1068 0.86 +1.6
1,183,571 + -2.0
1,183,621 + -2.0
1,183,621 + -0.6
1,183,636 + +0.0
1,183,678 + -0.7
1,184,770 + -1.0
1,184,812 + -0.8
1,184,812 + +0.7
1,184,812 + -0.6
1,184,812 + -1.4
1,184,813 - +0.6
1,184,813 - -3.1
1,184,942 + +0.4
1,184,943 - +0.0
1,184,943 - -0.5
1,184,943 - -0.7
1,184,943 - -1.2
1,184,958 + -0.3
1,184,959 - +0.8
1,185,067 - -1.1
1,185,083 + PfGW456L13_1070 0.11 -0.8
1,185,083 + PfGW456L13_1070 0.11 -0.6
1,185,083 + PfGW456L13_1070 0.11 +1.8
1,185,083 + PfGW456L13_1070 0.11 +1.9
1,185,083 + PfGW456L13_1070 0.11 +0.3
1,185,084 - PfGW456L13_1070 0.11 +0.2
1,185,084 - PfGW456L13_1070 0.11 +0.4
1,185,084 - PfGW456L13_1070 0.11 -0.1
1,185,084 - PfGW456L13_1070 0.11 -1.1
1,185,084 - PfGW456L13_1070 0.11 -0.1
1,185,087 + PfGW456L13_1070 0.12 -1.3
1,185,087 + PfGW456L13_1070 0.12 +0.7
1,185,087 + PfGW456L13_1070 0.12 +0.7
1,185,087 + PfGW456L13_1070 0.12 +0.9
1,185,087 + PfGW456L13_1070 0.12 +0.5
1,185,087 + PfGW456L13_1070 0.12 +0.3
1,185,087 + PfGW456L13_1070 0.12 +0.1
1,185,088 - PfGW456L13_1070 0.12 +0.5
1,185,088 - PfGW456L13_1070 0.12 -0.4
1,185,088 - PfGW456L13_1070 0.12 -0.1
1,185,088 - +0.9
1,185,088 - PfGW456L13_1070 0.12 +0.2
1,185,106 - PfGW456L13_1070 0.15 +1.8
1,185,204 + PfGW456L13_1070 0.29 -1.5
1,185,204 + PfGW456L13_1070 0.29 -0.0
1,185,204 + PfGW456L13_1070 0.29 -0.9
1,185,204 + PfGW456L13_1070 0.29 -0.4
1,185,204 + PfGW456L13_1070 0.29 -0.1
1,185,204 + PfGW456L13_1070 0.29 +0.7
1,185,204 + PfGW456L13_1070 0.29 -1.3
1,185,205 - PfGW456L13_1070 0.29 -1.9
1,185,205 - PfGW456L13_1070 0.29 -0.0
1,185,205 - PfGW456L13_1070 0.29 +0.0
1,185,205 - PfGW456L13_1070 0.29 -0.6
1,185,205 - PfGW456L13_1070 0.29 +0.5
1,185,205 - PfGW456L13_1070 0.29 -0.7
1,185,205 - PfGW456L13_1070 0.29 +1.5
1,185,260 - PfGW456L13_1070 0.38 +0.4
1,185,295 + PfGW456L13_1070 0.43 -0.6
1,185,327 + PfGW456L13_1070 0.48 +0.4
1,185,327 + PfGW456L13_1070 0.48 +0.6
1,185,328 - PfGW456L13_1070 0.48 -2.1
1,185,328 - PfGW456L13_1070 0.48 -1.4
1,185,328 - PfGW456L13_1070 0.48 -0.7
1,185,328 - PfGW456L13_1070 0.48 +1.6
1,185,328 - PfGW456L13_1070 0.48 -1.7
1,185,360 + PfGW456L13_1070 0.53 +0.0
1,185,361 - PfGW456L13_1070 0.53 -0.8
1,185,401 + PfGW456L13_1070 0.59 -0.2
1,185,426 + PfGW456L13_1070 0.62 -1.2
1,185,426 + PfGW456L13_1070 0.62 +0.4
1,185,426 + PfGW456L13_1070 0.62 -0.3
1,185,426 + PfGW456L13_1070 0.62 -0.4
1,185,426 + PfGW456L13_1070 0.62 +1.0
1,185,426 + PfGW456L13_1070 0.62 -1.1
1,185,426 + PfGW456L13_1070 0.62 +0.9
1,185,426 + PfGW456L13_1070 0.62 +0.9
1,185,426 + PfGW456L13_1070 0.62 +0.3
1,185,426 + PfGW456L13_1070 0.62 -0.2
1,185,426 + PfGW456L13_1070 0.62 +1.1
1,185,426 + PfGW456L13_1070 0.62 -0.2
1,185,426 + PfGW456L13_1070 0.62 -1.1
1,185,426 + PfGW456L13_1070 0.62 -0.1
1,185,427 - PfGW456L13_1070 0.63 -1.3
1,185,427 - PfGW456L13_1070 0.63 -0.0
1,185,427 - PfGW456L13_1070 0.63 -2.0
1,185,427 - PfGW456L13_1070 0.63 +0.7
1,185,427 - PfGW456L13_1070 0.63 +0.6
1,185,427 - PfGW456L13_1070 0.63 +1.7
1,185,427 - PfGW456L13_1070 0.63 +1.0
1,185,453 + PfGW456L13_1070 0.67 -0.9
1,185,454 - PfGW456L13_1070 0.67 +0.4
1,185,469 + PfGW456L13_1070 0.69 +0.3
1,185,469 + PfGW456L13_1070 0.69 +0.9
1,185,469 + PfGW456L13_1070 0.69 +0.3
1,185,470 - PfGW456L13_1070 0.69 +1.6
1,185,470 - PfGW456L13_1070 0.69 +1.4
1,185,470 - PfGW456L13_1070 0.69 -0.3
1,185,480 + PfGW456L13_1070 0.71 +1.2
1,185,480 + PfGW456L13_1070 0.71 -1.3
1,185,481 - PfGW456L13_1070 0.71 -0.5
1,185,500 - PfGW456L13_1070 0.74 +0.9
1,185,507 + PfGW456L13_1070 0.75 -1.5
1,185,508 - PfGW456L13_1070 0.75 -0.4
1,185,579 + PfGW456L13_1070 0.85 +1.8
1,185,579 + PfGW456L13_1070 0.85 -0.4
1,185,579 + PfGW456L13_1070 0.85 -1.0
1,185,579 + PfGW456L13_1070 0.85 -0.5
1,185,579 + PfGW456L13_1070 0.85 +0.5
1,185,579 + PfGW456L13_1070 0.85 +0.1
1,185,579 + PfGW456L13_1070 0.85 +0.0
1,185,579 + PfGW456L13_1070 0.85 -0.1
1,185,579 + PfGW456L13_1070 0.85 -1.0
1,185,579 + PfGW456L13_1070 0.85 -1.2
1,185,580 - PfGW456L13_1070 0.86 -0.8
1,185,580 - PfGW456L13_1070 0.86 +0.3
1,185,580 - PfGW456L13_1070 0.86 -0.2
1,185,580 - PfGW456L13_1070 0.86 +0.7
1,185,580 - PfGW456L13_1070 0.86 +1.0
1,185,580 - PfGW456L13_1070 0.86 -1.0
1,185,580 - PfGW456L13_1070 0.86 +0.4
1,185,580 - PfGW456L13_1070 0.86 -0.9
1,185,580 - PfGW456L13_1070 0.86 +0.4
1,185,580 - PfGW456L13_1070 0.86 +0.0
1,185,625 - -0.2
1,185,625 - +1.0
1,185,625 - +0.6
1,185,625 - -0.6
1,185,750 + +0.1
1,185,750 + +0.6
1,185,750 + -0.8
1,185,750 + +0.1
1,185,751 - -0.1
1,185,751 - -0.5
1,185,752 + +1.7
1,185,752 + -0.4
1,185,753 - -1.3

Or see this region's nucleotide sequence