Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1067

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1066 and PfGW456L13_1067 are separated by 35 nucleotidesPfGW456L13_1067 and PfGW456L13_1068 are separated by 56 nucleotidesPfGW456L13_1068 and PfGW456L13_1069 are separated by 220 nucleotides PfGW456L13_1066 - Phosphoglycerate kinase (EC 2.7.2.3), at 1,181,723 to 1,182,886 _1066 PfGW456L13_1067 - FIG00955006: hypothetical protein, at 1,182,922 to 1,183,143 _1067 PfGW456L13_1068 - Lipoprotein, putative, at 1,183,200 to 1,183,529 _1068 PfGW456L13_1069 - Fructose-bisphosphate aldolase class II (EC 4.1.2.13), at 1,183,750 to 1,184,814 _1069 Position (kb) 1182 1183 1184Strain fitness (log2 ratio) -2 -1 0 1 2at 1182.632 kb on - strand, within PfGW456L13_1066at 1183.102 kb on + strand, within PfGW456L13_1067at 1183.102 kb on + strand, within PfGW456L13_1067at 1183.102 kb on + strand, within PfGW456L13_1067at 1183.103 kb on - strand, within PfGW456L13_1067at 1183.103 kb on - strand, within PfGW456L13_1067at 1183.159 kb on - strandat 1183.211 kb on + strandat 1183.212 kb on - strandat 1183.335 kb on + strand, within PfGW456L13_1068at 1183.335 kb on + strand, within PfGW456L13_1068at 1183.352 kb on + strand, within PfGW456L13_1068at 1183.393 kb on - strand, within PfGW456L13_1068at 1183.431 kb on + strand, within PfGW456L13_1068at 1183.431 kb on + strand, within PfGW456L13_1068at 1183.432 kb on - strand, within PfGW456L13_1068at 1183.432 kb on - strand, within PfGW456L13_1068at 1183.432 kb on - strand, within PfGW456L13_1068at 1183.459 kb on + strand, within PfGW456L13_1068at 1183.459 kb on + strand, within PfGW456L13_1068at 1183.459 kb on + strand, within PfGW456L13_1068at 1183.459 kb on + strand, within PfGW456L13_1068at 1183.459 kb on + strand, within PfGW456L13_1068at 1183.459 kb on + strand, within PfGW456L13_1068at 1183.460 kb on - strand, within PfGW456L13_1068at 1183.483 kb on - strand, within PfGW456L13_1068at 1183.571 kb on + strandat 1183.621 kb on + strandat 1183.621 kb on + strandat 1183.636 kb on + strandat 1183.678 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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1,182,632 - PfGW456L13_1066 0.78 +0.6
1,183,102 + PfGW456L13_1067 0.81 -0.6
1,183,102 + PfGW456L13_1067 0.81 -0.6
1,183,102 + PfGW456L13_1067 0.81 -1.2
1,183,103 - PfGW456L13_1067 0.82 -2.1
1,183,103 - PfGW456L13_1067 0.82 -0.7
1,183,159 - -0.8
1,183,211 + -0.1
1,183,212 - -0.0
1,183,335 + PfGW456L13_1068 0.41 +0.2
1,183,335 + PfGW456L13_1068 0.41 -0.8
1,183,352 + PfGW456L13_1068 0.46 -0.1
1,183,393 - PfGW456L13_1068 0.58 +0.4
1,183,431 + PfGW456L13_1068 0.70 -0.7
1,183,431 + PfGW456L13_1068 0.70 -0.6
1,183,432 - PfGW456L13_1068 0.70 -0.6
1,183,432 - PfGW456L13_1068 0.70 -1.2
1,183,432 - PfGW456L13_1068 0.70 -0.0
1,183,459 + PfGW456L13_1068 0.78 -1.0
1,183,459 + PfGW456L13_1068 0.78 +1.9
1,183,459 + PfGW456L13_1068 0.78 +0.7
1,183,459 + PfGW456L13_1068 0.78 +0.2
1,183,459 + PfGW456L13_1068 0.78 -1.9
1,183,459 + PfGW456L13_1068 0.78 +0.4
1,183,460 - PfGW456L13_1068 0.79 +0.2
1,183,483 - PfGW456L13_1068 0.86 +1.6
1,183,571 + -2.0
1,183,621 + -2.0
1,183,621 + -0.6
1,183,636 + +0.0
1,183,678 + -0.7

Or see this region's nucleotide sequence