Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1025

Experiment: D-Serine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_1023 and PfGW456L13_1024 are separated by 10 nucleotidesPfGW456L13_1024 and PfGW456L13_1025 are separated by 156 nucleotidesPfGW456L13_1025 and PfGW456L13_1026 are separated by 37 nucleotides PfGW456L13_1023 - twitching motility protein PilH, at 1,132,882 to 1,133,247 _1023 PfGW456L13_1024 - type IV pili signal transduction protein PilI, at 1,133,258 to 1,133,797 _1024 PfGW456L13_1025 - type IV pilus biogenesis protein PilJ, at 1,133,954 to 1,136,014 _1025 PfGW456L13_1026 - Signal transduction histidine kinase CheA (EC 2.7.3.-), at 1,136,052 to 1,142,072 _1026 Position (kb) 1133 1134 1135 1136 1137Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1133.182 kb on + strand, within PfGW456L13_1023at 1133.183 kb on - strand, within PfGW456L13_1023at 1133.183 kb on - strand, within PfGW456L13_1023at 1133.183 kb on - strand, within PfGW456L13_1023at 1133.183 kb on - strand, within PfGW456L13_1023at 1133.183 kb on - strand, within PfGW456L13_1023at 1133.183 kb on - strand, within PfGW456L13_1023at 1133.396 kb on + strand, within PfGW456L13_1024at 1133.396 kb on + strand, within PfGW456L13_1024at 1133.396 kb on + strand, within PfGW456L13_1024at 1133.396 kb on + strand, within PfGW456L13_1024at 1133.396 kb on + strand, within PfGW456L13_1024at 1133.396 kb on + strand, within PfGW456L13_1024at 1133.396 kb on + strand, within PfGW456L13_1024at 1133.396 kb on + strand, within PfGW456L13_1024at 1133.397 kb on - strand, within PfGW456L13_1024at 1133.397 kb on - strand, within PfGW456L13_1024at 1133.397 kb on - strand, within PfGW456L13_1024at 1133.397 kb on - strand, within PfGW456L13_1024at 1133.397 kb on - strand, within PfGW456L13_1024at 1133.397 kb on - strand, within PfGW456L13_1024at 1133.397 kb on - strand, within PfGW456L13_1024at 1133.397 kb on - strand, within PfGW456L13_1024at 1133.397 kb on - strand, within PfGW456L13_1024at 1133.397 kb on - strand, within PfGW456L13_1024at 1133.454 kb on + strand, within PfGW456L13_1024at 1133.454 kb on + strand, within PfGW456L13_1024at 1133.454 kb on + strand, within PfGW456L13_1024at 1133.454 kb on + strand, within PfGW456L13_1024at 1133.455 kb on - strand, within PfGW456L13_1024at 1133.795 kb on + strandat 1133.795 kb on + strandat 1133.795 kb on + strandat 1133.796 kb on - strandat 1133.796 kb on - strandat 1133.796 kb on - strandat 1133.796 kb on - strandat 1133.861 kb on + strandat 1133.862 kb on - strandat 1133.917 kb on + strandat 1133.958 kb on + strandat 1133.958 kb on + strandat 1133.958 kb on + strandat 1133.958 kb on + strandat 1133.958 kb on + strandat 1133.958 kb on + strandat 1133.958 kb on + strandat 1133.959 kb on - strandat 1133.959 kb on - strandat 1134.085 kb on + strandat 1134.086 kb on - strandat 1134.086 kb on - strandat 1134.089 kb on + strandat 1134.089 kb on + strandat 1134.089 kb on + strandat 1134.090 kb on - strandat 1134.101 kb on + strandat 1134.101 kb on + strandat 1134.101 kb on + strandat 1134.101 kb on + strandat 1134.101 kb on + strandat 1134.101 kb on + strandat 1134.101 kb on + strandat 1134.102 kb on - strandat 1134.102 kb on - strandat 1134.102 kb on - strandat 1134.102 kb on - strandat 1134.102 kb on - strandat 1134.102 kb on - strandat 1134.143 kb on - strandat 1134.372 kb on + strand, within PfGW456L13_1025at 1134.373 kb on - strand, within PfGW456L13_1025at 1134.434 kb on + strand, within PfGW456L13_1025at 1134.435 kb on - strand, within PfGW456L13_1025at 1134.774 kb on + strand, within PfGW456L13_1025at 1134.774 kb on + strand, within PfGW456L13_1025at 1134.774 kb on + strand, within PfGW456L13_1025at 1134.893 kb on + strand, within PfGW456L13_1025at 1135.115 kb on + strand, within PfGW456L13_1025at 1135.116 kb on - strand, within PfGW456L13_1025at 1135.116 kb on - strand, within PfGW456L13_1025at 1135.116 kb on - strand, within PfGW456L13_1025at 1135.801 kb on + strand, within PfGW456L13_1025at 1135.802 kb on - strand, within PfGW456L13_1025at 1135.802 kb on - strand, within PfGW456L13_1025at 1135.802 kb on - strand, within PfGW456L13_1025at 1136.027 kb on + strandat 1136.027 kb on + strandat 1136.027 kb on + strandat 1136.070 kb on + strandat 1136.070 kb on + strandat 1136.070 kb on + strandat 1136.070 kb on + strandat 1136.070 kb on + strandat 1136.070 kb on + strandat 1136.070 kb on + strandat 1136.070 kb on + strandat 1136.070 kb on + strandat 1136.070 kb on + strandat 1136.071 kb on - strandat 1136.071 kb on - strandat 1136.071 kb on - strandat 1136.071 kb on - strandat 1136.071 kb on - strandat 1136.071 kb on - strandat 1136.071 kb on - strandat 1136.071 kb on - strandat 1136.232 kb on + strandat 1136.233 kb on - strandat 1136.355 kb on + strandat 1136.356 kb on - strandat 1136.356 kb on - strandat 1136.513 kb on + strandat 1136.514 kb on - strandat 1136.625 kb on + strandat 1136.638 kb on + strandat 1136.639 kb on - strandat 1136.639 kb on - strandat 1136.639 kb on - strandat 1136.639 kb on - strandat 1136.687 kb on - strand, within PfGW456L13_1026at 1136.741 kb on + strand, within PfGW456L13_1026at 1136.741 kb on + strand, within PfGW456L13_1026at 1136.742 kb on - strand, within PfGW456L13_1026at 1136.862 kb on + strand, within PfGW456L13_1026at 1136.862 kb on + strand, within PfGW456L13_1026at 1136.862 kb on + strand, within PfGW456L13_1026at 1136.862 kb on + strand, within PfGW456L13_1026at 1136.862 kb on + strand, within PfGW456L13_1026at 1136.862 kb on + strand, within PfGW456L13_1026at 1136.862 kb on + strand, within PfGW456L13_1026at 1136.862 kb on + strand, within PfGW456L13_1026at 1136.862 kb on + strand, within PfGW456L13_1026at 1136.862 kb on + strand, within PfGW456L13_1026at 1136.862 kb on + strand, within PfGW456L13_1026at 1136.862 kb on + strand, within PfGW456L13_1026at 1136.862 kb on + strand, within PfGW456L13_1026at 1136.862 kb on + strand, within PfGW456L13_1026at 1136.862 kb on + strand, within PfGW456L13_1026at 1136.862 kb on + strand, within PfGW456L13_1026at 1136.862 kb on + strand, within PfGW456L13_1026at 1136.862 kb on + strand, within PfGW456L13_1026at 1136.862 kb on + strand, within PfGW456L13_1026at 1136.863 kb on - strand, within PfGW456L13_1026at 1136.863 kb on - strand, within PfGW456L13_1026at 1136.863 kb on - strand, within PfGW456L13_1026at 1136.863 kb on - strand, within PfGW456L13_1026at 1136.863 kb on - strand, within PfGW456L13_1026at 1136.863 kb on - strand, within PfGW456L13_1026at 1136.863 kb on - strand, within PfGW456L13_1026at 1136.863 kb on - strand, within PfGW456L13_1026at 1136.863 kb on - strand, within PfGW456L13_1026at 1136.863 kb on - strand, within PfGW456L13_1026at 1136.863 kb on - strand, within PfGW456L13_1026

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
remove
1,133,182 + PfGW456L13_1023 0.82 +0.5
1,133,183 - PfGW456L13_1023 0.82 +1.3
1,133,183 - PfGW456L13_1023 0.82 +0.3
1,133,183 - PfGW456L13_1023 0.82 -0.9
1,133,183 - PfGW456L13_1023 0.82 +0.6
1,133,183 - PfGW456L13_1023 0.82 +0.6
1,133,183 - PfGW456L13_1023 0.82 -0.2
1,133,396 + PfGW456L13_1024 0.26 -0.1
1,133,396 + PfGW456L13_1024 0.26 -0.8
1,133,396 + PfGW456L13_1024 0.26 -1.7
1,133,396 + PfGW456L13_1024 0.26 -1.1
1,133,396 + PfGW456L13_1024 0.26 -1.6
1,133,396 + PfGW456L13_1024 0.26 +0.1
1,133,396 + PfGW456L13_1024 0.26 +0.3
1,133,396 + PfGW456L13_1024 0.26 -0.3
1,133,397 - PfGW456L13_1024 0.26 -1.2
1,133,397 - PfGW456L13_1024 0.26 +1.7
1,133,397 - PfGW456L13_1024 0.26 -0.5
1,133,397 - PfGW456L13_1024 0.26 -0.6
1,133,397 - PfGW456L13_1024 0.26 -0.2
1,133,397 - PfGW456L13_1024 0.26 -2.0
1,133,397 - PfGW456L13_1024 0.26 +1.0
1,133,397 - PfGW456L13_1024 0.26 -1.0
1,133,397 - PfGW456L13_1024 0.26 -1.4
1,133,397 - PfGW456L13_1024 0.26 -2.1
1,133,454 + PfGW456L13_1024 0.36 -2.1
1,133,454 + PfGW456L13_1024 0.36 +0.5
1,133,454 + PfGW456L13_1024 0.36 -1.5
1,133,454 + PfGW456L13_1024 0.36 -0.3
1,133,455 - PfGW456L13_1024 0.36 +0.2
1,133,795 + +0.3
1,133,795 + +0.5
1,133,795 + -1.0
1,133,796 - +0.6
1,133,796 - +1.2
1,133,796 - +1.6
1,133,796 - +1.5
1,133,861 + +0.5
1,133,862 - -0.1
1,133,917 + +0.6
1,133,958 + +0.6
1,133,958 + +0.2
1,133,958 + -0.2
1,133,958 + -0.1
1,133,958 + +0.5
1,133,958 + +1.1
1,133,958 + -0.3
1,133,959 - -1.4
1,133,959 - -0.9
1,134,085 + -1.5
1,134,086 - -0.1
1,134,086 - +0.6
1,134,089 + +1.2
1,134,089 + -0.8
1,134,089 + -1.0
1,134,090 - -1.5
1,134,101 + -1.6
1,134,101 + -0.7
1,134,101 + +0.1
1,134,101 + -2.3
1,134,101 + -1.6
1,134,101 + -0.8
1,134,101 + -1.0
1,134,102 - -0.4
1,134,102 - +0.6
1,134,102 - +1.0
1,134,102 - +0.1
1,134,102 - -0.6
1,134,102 - -1.2
1,134,143 - -1.5
1,134,372 + PfGW456L13_1025 0.20 -0.5
1,134,373 - PfGW456L13_1025 0.20 +0.4
1,134,434 + PfGW456L13_1025 0.23 -2.2
1,134,435 - PfGW456L13_1025 0.23 -0.7
1,134,774 + PfGW456L13_1025 0.40 -3.1
1,134,774 + PfGW456L13_1025 0.40 -1.2
1,134,774 + PfGW456L13_1025 0.40 +0.8
1,134,893 + PfGW456L13_1025 0.46 -2.8
1,135,115 + PfGW456L13_1025 0.56 -3.6
1,135,116 - PfGW456L13_1025 0.56 -0.6
1,135,116 - PfGW456L13_1025 0.56 -0.5
1,135,116 - PfGW456L13_1025 0.56 -0.9
1,135,801 + PfGW456L13_1025 0.90 -3.2
1,135,802 - PfGW456L13_1025 0.90 -0.5
1,135,802 - PfGW456L13_1025 0.90 -1.5
1,135,802 - PfGW456L13_1025 0.90 -1.9
1,136,027 + -1.2
1,136,027 + +0.0
1,136,027 + -0.7
1,136,070 + +0.9
1,136,070 + +1.1
1,136,070 + -0.1
1,136,070 + -0.9
1,136,070 + -1.2
1,136,070 + -0.4
1,136,070 + +0.8
1,136,070 + -1.6
1,136,070 + -0.0
1,136,070 + -1.5
1,136,071 - +0.0
1,136,071 - +0.9
1,136,071 - -0.3
1,136,071 - -1.5
1,136,071 - -0.0
1,136,071 - -0.5
1,136,071 - -0.3
1,136,071 - +0.9
1,136,232 + +0.7
1,136,233 - +0.3
1,136,355 + +0.9
1,136,356 - -0.5
1,136,356 - +0.2
1,136,513 + -2.0
1,136,514 - +1.0
1,136,625 + -1.9
1,136,638 + -1.5
1,136,639 - +0.3
1,136,639 - -0.9
1,136,639 - +1.2
1,136,639 - -0.4
1,136,687 - PfGW456L13_1026 0.11 +0.3
1,136,741 + PfGW456L13_1026 0.11 -1.2
1,136,741 + PfGW456L13_1026 0.11 -0.4
1,136,742 - PfGW456L13_1026 0.11 -3.2
1,136,862 + PfGW456L13_1026 0.13 +0.1
1,136,862 + PfGW456L13_1026 0.13 +0.8
1,136,862 + PfGW456L13_1026 0.13 -0.5
1,136,862 + PfGW456L13_1026 0.13 -1.6
1,136,862 + PfGW456L13_1026 0.13 -0.4
1,136,862 + PfGW456L13_1026 0.13 -1.0
1,136,862 + PfGW456L13_1026 0.13 +0.6
1,136,862 + PfGW456L13_1026 0.13 -0.4
1,136,862 + PfGW456L13_1026 0.13 +1.0
1,136,862 + PfGW456L13_1026 0.13 -0.6
1,136,862 + PfGW456L13_1026 0.13 -0.3
1,136,862 + PfGW456L13_1026 0.13 -0.2
1,136,862 + PfGW456L13_1026 0.13 -0.6
1,136,862 + PfGW456L13_1026 0.13 +0.6
1,136,862 + PfGW456L13_1026 0.13 -0.2
1,136,862 + PfGW456L13_1026 0.13 -1.5
1,136,862 + PfGW456L13_1026 0.13 -0.9
1,136,862 + PfGW456L13_1026 0.13 -0.3
1,136,862 + PfGW456L13_1026 0.13 -0.3
1,136,863 - PfGW456L13_1026 0.13 +0.4
1,136,863 - PfGW456L13_1026 0.13 +0.9
1,136,863 - PfGW456L13_1026 0.13 -0.7
1,136,863 - PfGW456L13_1026 0.13 -0.8
1,136,863 - PfGW456L13_1026 0.13 +0.2
1,136,863 - PfGW456L13_1026 0.13 -1.4
1,136,863 - PfGW456L13_1026 0.13 -0.9
1,136,863 - PfGW456L13_1026 0.13 -1.2
1,136,863 - PfGW456L13_1026 0.13 -0.5
1,136,863 - PfGW456L13_1026 0.13 +2.2
1,136,863 - PfGW456L13_1026 0.13 +0.4

Or see this region's nucleotide sequence