Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1004

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1003 and PfGW456L13_1004 overlap by 4 nucleotidesPfGW456L13_1004 and PfGW456L13_1005 overlap by 4 nucleotidesPfGW456L13_1005 and PfGW456L13_1006 are separated by 26 nucleotides PfGW456L13_1003 - Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB, at 1,116,766 to 1,117,971 _1003 PfGW456L13_1004 - Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15), at 1,117,968 to 1,118,564 _1004 PfGW456L13_1005 - FIG003551: hypothetical protein, at 1,118,561 to 1,118,995 _1005 PfGW456L13_1006 - Homoserine O-acetyltransferase (EC 2.3.1.31), at 1,119,022 to 1,119,642 _1006 Position (kb) 1117 1118 1119Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1117.037 kb on + strand, within PfGW456L13_1003at 1117.037 kb on + strand, within PfGW456L13_1003at 1117.066 kb on - strand, within PfGW456L13_1003at 1117.145 kb on + strand, within PfGW456L13_1003at 1117.145 kb on + strand, within PfGW456L13_1003at 1117.146 kb on - strand, within PfGW456L13_1003at 1117.184 kb on + strand, within PfGW456L13_1003at 1117.184 kb on + strand, within PfGW456L13_1003at 1117.185 kb on - strand, within PfGW456L13_1003at 1117.185 kb on - strand, within PfGW456L13_1003at 1117.185 kb on - strand, within PfGW456L13_1003at 1117.208 kb on + strand, within PfGW456L13_1003at 1117.208 kb on + strand, within PfGW456L13_1003at 1117.209 kb on - strand, within PfGW456L13_1003at 1117.297 kb on + strand, within PfGW456L13_1003at 1117.297 kb on + strand, within PfGW456L13_1003at 1117.297 kb on + strand, within PfGW456L13_1003at 1117.298 kb on - strand, within PfGW456L13_1003at 1117.298 kb on - strand, within PfGW456L13_1003at 1117.298 kb on - strand, within PfGW456L13_1003at 1117.468 kb on + strand, within PfGW456L13_1003at 1117.742 kb on + strand, within PfGW456L13_1003at 1117.742 kb on + strand, within PfGW456L13_1003at 1117.743 kb on - strand, within PfGW456L13_1003at 1117.743 kb on - strand, within PfGW456L13_1003at 1117.790 kb on + strand, within PfGW456L13_1003at 1117.790 kb on + strand, within PfGW456L13_1003at 1117.790 kb on + strand, within PfGW456L13_1003at 1117.790 kb on + strand, within PfGW456L13_1003at 1117.875 kb on + strandat 1117.875 kb on + strandat 1117.877 kb on + strandat 1117.877 kb on + strandat 1117.877 kb on + strandat 1117.877 kb on + strandat 1117.877 kb on + strandat 1117.877 kb on + strandat 1117.877 kb on + strandat 1117.877 kb on + strandat 1117.877 kb on + strandat 1117.878 kb on - strandat 1117.878 kb on - strandat 1117.878 kb on - strandat 1117.922 kb on - strandat 1117.922 kb on - strandat 1118.096 kb on - strand, within PfGW456L13_1004at 1118.205 kb on + strand, within PfGW456L13_1004at 1118.206 kb on - strand, within PfGW456L13_1004at 1118.308 kb on + strand, within PfGW456L13_1004at 1118.308 kb on + strand, within PfGW456L13_1004at 1118.308 kb on + strand, within PfGW456L13_1004at 1118.308 kb on + strand, within PfGW456L13_1004at 1118.309 kb on - strand, within PfGW456L13_1004at 1118.309 kb on - strand, within PfGW456L13_1004at 1118.309 kb on - strand, within PfGW456L13_1004at 1118.309 kb on - strand, within PfGW456L13_1004at 1118.313 kb on - strand, within PfGW456L13_1004at 1118.313 kb on - strand, within PfGW456L13_1004at 1118.529 kb on - strandat 1118.541 kb on + strandat 1118.676 kb on + strand, within PfGW456L13_1005at 1118.676 kb on + strand, within PfGW456L13_1005at 1118.677 kb on - strand, within PfGW456L13_1005at 1118.677 kb on - strand, within PfGW456L13_1005at 1118.677 kb on - strand, within PfGW456L13_1005at 1118.677 kb on - strand, within PfGW456L13_1005at 1118.677 kb on - strand, within PfGW456L13_1005at 1118.677 kb on - strand, within PfGW456L13_1005at 1118.677 kb on - strand, within PfGW456L13_1005at 1118.677 kb on - strand, within PfGW456L13_1005at 1118.677 kb on - strand, within PfGW456L13_1005at 1118.679 kb on + strand, within PfGW456L13_1005at 1118.679 kb on + strand, within PfGW456L13_1005at 1118.679 kb on + strand, within PfGW456L13_1005at 1118.679 kb on + strand, within PfGW456L13_1005at 1118.679 kb on + strand, within PfGW456L13_1005at 1118.679 kb on + strand, within PfGW456L13_1005at 1118.679 kb on + strand, within PfGW456L13_1005at 1118.680 kb on - strand, within PfGW456L13_1005at 1118.680 kb on - strand, within PfGW456L13_1005at 1118.721 kb on + strand, within PfGW456L13_1005at 1118.721 kb on + strand, within PfGW456L13_1005at 1118.721 kb on + strand, within PfGW456L13_1005at 1118.721 kb on + strand, within PfGW456L13_1005at 1118.722 kb on - strand, within PfGW456L13_1005at 1118.722 kb on - strand, within PfGW456L13_1005at 1118.722 kb on - strand, within PfGW456L13_1005at 1118.722 kb on - strand, within PfGW456L13_1005at 1118.862 kb on + strand, within PfGW456L13_1005at 1118.863 kb on - strand, within PfGW456L13_1005at 1118.863 kb on - strand, within PfGW456L13_1005at 1118.863 kb on - strand, within PfGW456L13_1005at 1118.863 kb on - strand, within PfGW456L13_1005at 1118.863 kb on - strand, within PfGW456L13_1005at 1118.863 kb on - strand, within PfGW456L13_1005at 1118.863 kb on - strand, within PfGW456L13_1005at 1118.883 kb on + strand, within PfGW456L13_1005at 1118.883 kb on + strand, within PfGW456L13_1005at 1118.883 kb on + strand, within PfGW456L13_1005at 1118.884 kb on - strand, within PfGW456L13_1005at 1118.884 kb on - strand, within PfGW456L13_1005at 1118.884 kb on - strand, within PfGW456L13_1005at 1118.884 kb on - strand, within PfGW456L13_1005at 1118.884 kb on - strand, within PfGW456L13_1005at 1118.884 kb on - strand, within PfGW456L13_1005at 1118.884 kb on - strand, within PfGW456L13_1005at 1118.972 kb on + strandat 1118.973 kb on - strandat 1118.973 kb on - strandat 1118.984 kb on + strandat 1119.013 kb on + strandat 1119.013 kb on + strandat 1119.014 kb on - strandat 1119.068 kb on + strandat 1119.068 kb on + strandat 1119.069 kb on - strandat 1119.069 kb on - strandat 1119.069 kb on - strandat 1119.072 kb on + strandat 1119.073 kb on - strandat 1119.085 kb on + strand, within PfGW456L13_1006at 1119.086 kb on - strand, within PfGW456L13_1006at 1119.093 kb on + strand, within PfGW456L13_1006at 1119.100 kb on + strand, within PfGW456L13_1006at 1119.100 kb on + strand, within PfGW456L13_1006at 1119.100 kb on + strand, within PfGW456L13_1006at 1119.100 kb on + strand, within PfGW456L13_1006at 1119.100 kb on + strand, within PfGW456L13_1006at 1119.101 kb on - strand, within PfGW456L13_1006at 1119.101 kb on - strand, within PfGW456L13_1006at 1119.101 kb on - strand, within PfGW456L13_1006at 1119.101 kb on - strand, within PfGW456L13_1006at 1119.227 kb on + strand, within PfGW456L13_1006at 1119.236 kb on + strand, within PfGW456L13_1006at 1119.281 kb on + strand, within PfGW456L13_1006

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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1,117,037 + PfGW456L13_1003 0.22 +0.9
1,117,037 + PfGW456L13_1003 0.22 +1.3
1,117,066 - PfGW456L13_1003 0.25 +1.0
1,117,145 + PfGW456L13_1003 0.31 +2.4
1,117,145 + PfGW456L13_1003 0.31 -2.9
1,117,146 - PfGW456L13_1003 0.32 +1.9
1,117,184 + PfGW456L13_1003 0.35 +0.4
1,117,184 + PfGW456L13_1003 0.35 +0.1
1,117,185 - PfGW456L13_1003 0.35 +0.3
1,117,185 - PfGW456L13_1003 0.35 +0.4
1,117,185 - PfGW456L13_1003 0.35 +0.4
1,117,208 + PfGW456L13_1003 0.37 -0.0
1,117,208 + PfGW456L13_1003 0.37 +0.8
1,117,209 - PfGW456L13_1003 0.37 +0.4
1,117,297 + PfGW456L13_1003 0.44 +2.0
1,117,297 + PfGW456L13_1003 0.44 -0.5
1,117,297 + PfGW456L13_1003 0.44 -0.7
1,117,298 - PfGW456L13_1003 0.44 -1.8
1,117,298 - PfGW456L13_1003 0.44 -0.3
1,117,298 - PfGW456L13_1003 0.44 -0.4
1,117,468 + PfGW456L13_1003 0.58 +0.3
1,117,742 + PfGW456L13_1003 0.81 -0.1
1,117,742 + PfGW456L13_1003 0.81 +1.1
1,117,743 - PfGW456L13_1003 0.81 -2.3
1,117,743 - PfGW456L13_1003 0.81 +1.6
1,117,790 + PfGW456L13_1003 0.85 +1.4
1,117,790 + PfGW456L13_1003 0.85 +1.5
1,117,790 + PfGW456L13_1003 0.85 +1.5
1,117,790 + PfGW456L13_1003 0.85 -0.4
1,117,875 + -0.7
1,117,875 + +0.6
1,117,877 + +1.0
1,117,877 + -2.7
1,117,877 + -0.3
1,117,877 + +1.1
1,117,877 + +0.2
1,117,877 + +0.2
1,117,877 + +2.5
1,117,877 + +0.9
1,117,877 + +0.2
1,117,878 - -0.7
1,117,878 - +0.8
1,117,878 - +1.9
1,117,922 - +0.2
1,117,922 - -1.1
1,118,096 - PfGW456L13_1004 0.21 -0.6
1,118,205 + PfGW456L13_1004 0.40 -0.4
1,118,206 - PfGW456L13_1004 0.40 -0.1
1,118,308 + PfGW456L13_1004 0.57 -0.3
1,118,308 + PfGW456L13_1004 0.57 -1.9
1,118,308 + PfGW456L13_1004 0.57 -0.1
1,118,308 + PfGW456L13_1004 0.57 +0.4
1,118,309 - PfGW456L13_1004 0.57 -0.9
1,118,309 - PfGW456L13_1004 0.57 -2.2
1,118,309 - PfGW456L13_1004 0.57 -0.9
1,118,309 - PfGW456L13_1004 0.57 -2.0
1,118,313 - PfGW456L13_1004 0.58 +0.2
1,118,313 - PfGW456L13_1004 0.58 -0.8
1,118,529 - -1.7
1,118,541 + -0.5
1,118,676 + PfGW456L13_1005 0.26 -0.4
1,118,676 + PfGW456L13_1005 0.26 -0.6
1,118,677 - PfGW456L13_1005 0.27 -2.2
1,118,677 - PfGW456L13_1005 0.27 -2.1
1,118,677 - PfGW456L13_1005 0.27 -0.9
1,118,677 - PfGW456L13_1005 0.27 +0.6
1,118,677 - PfGW456L13_1005 0.27 +0.5
1,118,677 - PfGW456L13_1005 0.27 -0.6
1,118,677 - PfGW456L13_1005 0.27 +1.3
1,118,677 - PfGW456L13_1005 0.27 -0.4
1,118,677 - PfGW456L13_1005 0.27 +0.0
1,118,679 + PfGW456L13_1005 0.27 +0.3
1,118,679 + PfGW456L13_1005 0.27 +0.5
1,118,679 + PfGW456L13_1005 0.27 +1.4
1,118,679 + PfGW456L13_1005 0.27 +1.9
1,118,679 + PfGW456L13_1005 0.27 -0.4
1,118,679 + PfGW456L13_1005 0.27 -0.7
1,118,679 + PfGW456L13_1005 0.27 -2.5
1,118,680 - PfGW456L13_1005 0.27 -1.0
1,118,680 - PfGW456L13_1005 0.27 +0.0
1,118,721 + PfGW456L13_1005 0.37 -0.2
1,118,721 + PfGW456L13_1005 0.37 -0.9
1,118,721 + PfGW456L13_1005 0.37 -0.5
1,118,721 + PfGW456L13_1005 0.37 +0.2
1,118,722 - PfGW456L13_1005 0.37 +0.8
1,118,722 - PfGW456L13_1005 0.37 -0.7
1,118,722 - PfGW456L13_1005 0.37 +0.4
1,118,722 - PfGW456L13_1005 0.37 +0.9
1,118,862 + PfGW456L13_1005 0.69 +0.7
1,118,863 - PfGW456L13_1005 0.69 +0.4
1,118,863 - PfGW456L13_1005 0.69 +0.2
1,118,863 - PfGW456L13_1005 0.69 +0.9
1,118,863 - PfGW456L13_1005 0.69 -0.0
1,118,863 - PfGW456L13_1005 0.69 +0.1
1,118,863 - PfGW456L13_1005 0.69 +1.0
1,118,863 - PfGW456L13_1005 0.69 +0.2
1,118,883 + PfGW456L13_1005 0.74 -0.8
1,118,883 + PfGW456L13_1005 0.74 +0.7
1,118,883 + PfGW456L13_1005 0.74 +1.1
1,118,884 - PfGW456L13_1005 0.74 +1.0
1,118,884 - PfGW456L13_1005 0.74 +0.7
1,118,884 - PfGW456L13_1005 0.74 +0.2
1,118,884 - PfGW456L13_1005 0.74 -0.0
1,118,884 - PfGW456L13_1005 0.74 -0.7
1,118,884 - PfGW456L13_1005 0.74 -1.1
1,118,884 - PfGW456L13_1005 0.74 +1.9
1,118,972 + +0.6
1,118,973 - +1.0
1,118,973 - -2.2
1,118,984 + +0.3
1,119,013 + -1.1
1,119,013 + +0.6
1,119,014 - +0.8
1,119,068 + -2.8
1,119,068 + -3.9
1,119,069 - -2.0
1,119,069 - -2.5
1,119,069 - -1.9
1,119,072 + -4.2
1,119,073 - -4.1
1,119,085 + PfGW456L13_1006 0.10 -0.7
1,119,086 - PfGW456L13_1006 0.10 -3.2
1,119,093 + PfGW456L13_1006 0.11 -3.1
1,119,100 + PfGW456L13_1006 0.13 -3.5
1,119,100 + PfGW456L13_1006 0.13 -2.9
1,119,100 + PfGW456L13_1006 0.13 -4.3
1,119,100 + PfGW456L13_1006 0.13 -2.0
1,119,100 + PfGW456L13_1006 0.13 -2.8
1,119,101 - PfGW456L13_1006 0.13 -1.4
1,119,101 - PfGW456L13_1006 0.13 -3.2
1,119,101 - PfGW456L13_1006 0.13 -2.2
1,119,101 - PfGW456L13_1006 0.13 -0.6
1,119,227 + PfGW456L13_1006 0.33 -2.9
1,119,236 + PfGW456L13_1006 0.34 -2.6
1,119,281 + PfGW456L13_1006 0.42 -3.2

Or see this region's nucleotide sequence