Experiment: 2-Ethylhexanol 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4610 and PP_5699 overlap by 4 nucleotides PP_5699 and PP_4611 are separated by 139 nucleotides PP_4611 and PP_4612 overlap by 4 nucleotides
PP_4610: PP_4610 - conserved protein of unknown function containing PepSY-associated TM helix domain, at 5,231,118 to 5,232,695
_4610
PP_5699: PP_5699 - putative iron uptake protein, at 5,232,692 to 5,232,997
_5699
PP_4611: PP_4611 - RNA polymerase sigma-70 factor, ECF subfamily, at 5,233,137 to 5,233,649
_4611
PP_4612: PP_4612 - putative FecR protein, at 5,233,646 to 5,234,572
_4612
Position (kb) 5232
5233 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5231.743 kb on - strand, within PP_4610 at 5231.936 kb on - strand, within PP_4610 at 5232.017 kb on - strand, within PP_4610 at 5232.017 kb on - strand, within PP_4610 at 5232.017 kb on - strand, within PP_4610 at 5232.037 kb on + strand, within PP_4610 at 5232.038 kb on - strand, within PP_4610 at 5232.070 kb on + strand, within PP_4610 at 5232.070 kb on + strand, within PP_4610 at 5232.071 kb on - strand, within PP_4610 at 5232.071 kb on - strand, within PP_4610 at 5232.071 kb on - strand, within PP_4610 at 5232.071 kb on - strand, within PP_4610 at 5232.094 kb on + strand, within PP_4610 at 5232.094 kb on + strand, within PP_4610 at 5232.095 kb on - strand, within PP_4610 at 5232.095 kb on - strand, within PP_4610 at 5232.215 kb on + strand, within PP_4610 at 5232.216 kb on - strand, within PP_4610 at 5232.317 kb on - strand, within PP_4610 at 5232.502 kb on + strand, within PP_4610 at 5232.503 kb on - strand, within PP_4610 at 5232.524 kb on + strand, within PP_4610 at 5232.525 kb on - strand, within PP_4610 at 5232.816 kb on + strand, within PP_5699 at 5232.886 kb on + strand, within PP_5699 at 5232.886 kb on + strand, within PP_5699 at 5232.887 kb on - strand, within PP_5699 at 5232.887 kb on - strand, within PP_5699 at 5232.887 kb on - strand, within PP_5699 at 5232.887 kb on - strand, within PP_5699 at 5232.915 kb on + strand, within PP_5699 at 5232.916 kb on - strand, within PP_5699 at 5232.964 kb on - strand, within PP_5699 at 5233.148 kb on + strand at 5233.148 kb on + strand at 5233.149 kb on - strand at 5233.169 kb on + strand at 5233.169 kb on + strand at 5233.170 kb on - strand at 5233.191 kb on + strand, within PP_4611 at 5233.278 kb on + strand, within PP_4611 at 5233.278 kb on + strand, within PP_4611 at 5233.278 kb on + strand, within PP_4611 at 5233.278 kb on + strand, within PP_4611 at 5233.278 kb on + strand, within PP_4611 at 5233.279 kb on - strand, within PP_4611 at 5233.279 kb on - strand, within PP_4611 at 5233.279 kb on - strand, within PP_4611 at 5233.279 kb on - strand, within PP_4611 at 5233.279 kb on - strand, within PP_4611 at 5233.279 kb on - strand, within PP_4611 at 5233.357 kb on + strand, within PP_4611 at 5233.358 kb on - strand, within PP_4611 at 5233.365 kb on - strand, within PP_4611 at 5233.398 kb on + strand, within PP_4611 at 5233.477 kb on + strand, within PP_4611 at 5233.478 kb on - strand, within PP_4611 at 5233.587 kb on + strand, within PP_4611
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Ethylhexanol 0.4 vol% remove 5,231,743 - PP_4610 0.40 +1.4 5,231,936 - PP_4610 0.52 +0.6 5,232,017 - PP_4610 0.57 -0.5 5,232,017 - PP_4610 0.57 -0.5 5,232,017 - PP_4610 0.57 -0.3 5,232,037 + PP_4610 0.58 -0.2 5,232,038 - PP_4610 0.58 -0.6 5,232,070 + PP_4610 0.60 +0.5 5,232,070 + PP_4610 0.60 +0.0 5,232,071 - PP_4610 0.60 +1.7 5,232,071 - PP_4610 0.60 -0.2 5,232,071 - PP_4610 0.60 -0.4 5,232,071 - PP_4610 0.60 -0.4 5,232,094 + PP_4610 0.62 +0.2 5,232,094 + PP_4610 0.62 +0.0 5,232,095 - PP_4610 0.62 -0.8 5,232,095 - PP_4610 0.62 -1.0 5,232,215 + PP_4610 0.70 +0.6 5,232,216 - PP_4610 0.70 -1.2 5,232,317 - PP_4610 0.76 +0.2 5,232,502 + PP_4610 0.88 -0.9 5,232,503 - PP_4610 0.88 -0.1 5,232,524 + PP_4610 0.89 -1.4 5,232,525 - PP_4610 0.89 +0.4 5,232,816 + PP_5699 0.41 -1.2 5,232,886 + PP_5699 0.63 -2.0 5,232,886 + PP_5699 0.63 -2.3 5,232,887 - PP_5699 0.64 +0.2 5,232,887 - PP_5699 0.64 +0.3 5,232,887 - PP_5699 0.64 -0.5 5,232,887 - PP_5699 0.64 -0.4 5,232,915 + PP_5699 0.73 -2.9 5,232,916 - PP_5699 0.73 +0.6 5,232,964 - PP_5699 0.89 +1.0 5,233,148 + +0.3 5,233,148 + +0.4 5,233,149 - -0.4 5,233,169 + -0.4 5,233,169 + -1.0 5,233,170 - -0.9 5,233,191 + PP_4611 0.11 -1.6 5,233,278 + PP_4611 0.27 +0.1 5,233,278 + PP_4611 0.27 -2.0 5,233,278 + PP_4611 0.27 -0.5 5,233,278 + PP_4611 0.27 -1.6 5,233,278 + PP_4611 0.27 -1.5 5,233,279 - PP_4611 0.28 -1.7 5,233,279 - PP_4611 0.28 +0.1 5,233,279 - PP_4611 0.28 -0.7 5,233,279 - PP_4611 0.28 -0.1 5,233,279 - PP_4611 0.28 -0.5 5,233,279 - PP_4611 0.28 -0.1 5,233,357 + PP_4611 0.43 +0.1 5,233,358 - PP_4611 0.43 -1.5 5,233,365 - PP_4611 0.44 -2.0 5,233,398 + PP_4611 0.51 -1.1 5,233,477 + PP_4611 0.66 -2.2 5,233,478 - PP_4611 0.66 -0.3 5,233,587 + PP_4611 0.88 -1.5
Or see this region's nucleotide sequence