Strain Fitness in Pseudomonas putida KT2440 around PP_4826

Experiment: 2-Ethylhexanol 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5715 and PP_5716 are separated by 51 nucleotidesPP_5716 and PP_4826 are separated by 118 nucleotidesPP_4826 and PP_4827 overlap by 13 nucleotidesPP_4827 and PP_4828 overlap by 4 nucleotides PP_5715: PP_5715 - protein of unknown function, at 5,490,775 to 5,491,464 _5715 PP_5716: PP_5716 - conserved protein of unknown function, at 5,491,516 to 5,492,199 _5716 PP_4826: PP_4826 - Precorrin-3B C17-methyltransferase, at 5,492,318 to 5,494,015 _4826 PP_4827: PP_4827 - Precorrin-2 C(20)-methyltransferase, at 5,494,003 to 5,494,737 _4827 PP_4828: PP_4828 - Precorrin-8X methylmutase, at 5,494,734 to 5,495,360 _4828 Position (kb) 5492 5493 5494 5495Strain fitness (log2 ratio) -2 -1 0 1 2at 5491.355 kb on + strand, within PP_5715at 5491.355 kb on + strand, within PP_5715at 5491.355 kb on + strand, within PP_5715at 5491.356 kb on - strand, within PP_5715at 5491.452 kb on - strandat 5491.452 kb on - strandat 5491.468 kb on + strandat 5491.468 kb on + strandat 5491.468 kb on + strandat 5491.468 kb on + strandat 5491.469 kb on - strandat 5491.469 kb on - strandat 5491.469 kb on - strandat 5491.509 kb on + strandat 5491.571 kb on - strandat 5491.670 kb on + strand, within PP_5716at 5491.670 kb on + strand, within PP_5716at 5491.671 kb on - strand, within PP_5716at 5491.671 kb on - strand, within PP_5716at 5491.876 kb on + strand, within PP_5716at 5491.876 kb on + strand, within PP_5716at 5491.876 kb on + strand, within PP_5716at 5491.877 kb on - strand, within PP_5716at 5491.898 kb on + strand, within PP_5716at 5491.898 kb on + strand, within PP_5716at 5491.947 kb on + strand, within PP_5716at 5491.947 kb on + strand, within PP_5716at 5491.947 kb on + strand, within PP_5716at 5491.948 kb on - strand, within PP_5716at 5491.948 kb on - strand, within PP_5716at 5491.948 kb on - strand, within PP_5716at 5491.948 kb on - strand, within PP_5716at 5491.948 kb on - strand, within PP_5716at 5491.969 kb on + strand, within PP_5716at 5492.012 kb on + strand, within PP_5716at 5492.012 kb on + strand, within PP_5716at 5492.012 kb on + strand, within PP_5716at 5492.012 kb on + strand, within PP_5716at 5492.012 kb on + strand, within PP_5716at 5492.013 kb on - strand, within PP_5716at 5492.018 kb on + strand, within PP_5716at 5492.018 kb on + strand, within PP_5716at 5492.019 kb on - strand, within PP_5716at 5492.019 kb on - strand, within PP_5716at 5492.019 kb on - strand, within PP_5716at 5492.019 kb on - strand, within PP_5716at 5492.019 kb on - strand, within PP_5716at 5492.049 kb on + strand, within PP_5716at 5492.049 kb on + strand, within PP_5716at 5492.049 kb on + strand, within PP_5716at 5492.050 kb on - strand, within PP_5716at 5492.050 kb on - strand, within PP_5716at 5492.116 kb on + strand, within PP_5716at 5492.116 kb on + strand, within PP_5716at 5492.237 kb on + strandat 5492.237 kb on + strandat 5492.269 kb on - strandat 5492.269 kb on - strandat 5492.269 kb on - strandat 5492.269 kb on - strandat 5492.334 kb on + strandat 5492.335 kb on - strandat 5492.335 kb on - strandat 5492.348 kb on - strandat 5492.348 kb on - strandat 5492.349 kb on + strandat 5492.349 kb on + strandat 5492.349 kb on + strandat 5492.349 kb on + strandat 5492.389 kb on + strandat 5492.390 kb on - strandat 5492.390 kb on - strandat 5492.390 kb on - strandat 5492.460 kb on - strandat 5492.482 kb on + strandat 5492.483 kb on - strandat 5492.483 kb on - strandat 5492.504 kb on + strand, within PP_4826at 5492.504 kb on + strand, within PP_4826at 5492.504 kb on + strand, within PP_4826at 5492.505 kb on - strand, within PP_4826at 5492.589 kb on + strand, within PP_4826at 5492.590 kb on - strand, within PP_4826at 5492.590 kb on - strand, within PP_4826at 5492.974 kb on - strand, within PP_4826at 5492.974 kb on - strand, within PP_4826at 5493.150 kb on - strand, within PP_4826at 5493.340 kb on + strand, within PP_4826at 5493.340 kb on + strand, within PP_4826at 5493.536 kb on + strand, within PP_4826at 5493.537 kb on - strand, within PP_4826at 5493.573 kb on + strand, within PP_4826at 5493.573 kb on + strand, within PP_4826at 5493.573 kb on + strand, within PP_4826at 5493.573 kb on + strand, within PP_4826at 5493.574 kb on - strand, within PP_4826at 5493.574 kb on - strand, within PP_4826at 5493.574 kb on - strand, within PP_4826at 5493.574 kb on - strand, within PP_4826at 5493.601 kb on + strand, within PP_4826at 5493.854 kb on - strandat 5493.940 kb on + strandat 5493.940 kb on + strandat 5494.046 kb on + strandat 5494.118 kb on + strand, within PP_4827at 5494.118 kb on + strand, within PP_4827at 5494.119 kb on - strand, within PP_4827at 5494.119 kb on - strand, within PP_4827at 5494.119 kb on - strand, within PP_4827at 5494.119 kb on - strand, within PP_4827at 5494.119 kb on - strand, within PP_4827at 5494.119 kb on - strandat 5494.119 kb on - strand, within PP_4827at 5494.275 kb on + strand, within PP_4827at 5494.379 kb on + strand, within PP_4827at 5494.379 kb on + strand, within PP_4827at 5494.379 kb on + strand, within PP_4827at 5494.379 kb on + strand, within PP_4827at 5494.379 kb on + strand, within PP_4827at 5494.379 kb on + strand, within PP_4827at 5494.379 kb on + strand, within PP_4827at 5494.379 kb on + strand, within PP_4827at 5494.380 kb on - strand, within PP_4827at 5494.380 kb on - strand, within PP_4827at 5494.380 kb on - strand, within PP_4827at 5494.380 kb on - strand, within PP_4827at 5494.380 kb on - strand, within PP_4827at 5494.380 kb on - strand, within PP_4827at 5494.385 kb on + strand, within PP_4827at 5494.385 kb on + strand, within PP_4827at 5494.385 kb on + strand, within PP_4827at 5494.385 kb on + strand, within PP_4827at 5494.385 kb on + strand, within PP_4827at 5494.385 kb on + strand, within PP_4827at 5494.385 kb on + strand, within PP_4827at 5494.385 kb on + strand, within PP_4827at 5494.385 kb on + strand, within PP_4827at 5494.386 kb on - strand, within PP_4827at 5494.386 kb on - strand, within PP_4827at 5494.386 kb on - strand, within PP_4827at 5494.386 kb on - strand, within PP_4827at 5494.386 kb on - strand, within PP_4827at 5494.386 kb on - strand, within PP_4827at 5494.394 kb on + strand, within PP_4827at 5494.395 kb on - strand, within PP_4827at 5494.395 kb on - strand, within PP_4827at 5494.462 kb on + strand, within PP_4827at 5494.462 kb on + strand, within PP_4827at 5494.462 kb on + strand, within PP_4827at 5494.463 kb on - strand, within PP_4827at 5494.463 kb on - strand, within PP_4827at 5494.463 kb on - strand, within PP_4827at 5494.467 kb on + strand, within PP_4827at 5494.467 kb on + strand, within PP_4827at 5494.478 kb on + strand, within PP_4827at 5494.479 kb on - strand, within PP_4827at 5494.503 kb on - strand, within PP_4827at 5494.503 kb on - strand, within PP_4827at 5494.503 kb on - strand, within PP_4827at 5494.503 kb on - strand, within PP_4827at 5494.588 kb on - strand, within PP_4827at 5494.628 kb on + strand, within PP_4827at 5494.937 kb on - strand, within PP_4828at 5495.011 kb on - strand, within PP_4828

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Ethylhexanol 0.4 vol%
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5,491,355 + PP_5715 0.84 +0.5
5,491,355 + PP_5715 0.84 +0.4
5,491,355 + PP_5715 0.84 +1.0
5,491,356 - PP_5715 0.84 -1.1
5,491,452 - -0.9
5,491,452 - -0.1
5,491,468 + +0.1
5,491,468 + +0.5
5,491,468 + +0.3
5,491,468 + +0.8
5,491,469 - -0.8
5,491,469 - -0.6
5,491,469 - -0.0
5,491,509 + +1.0
5,491,571 - -2.2
5,491,670 + PP_5716 0.23 +1.4
5,491,670 + PP_5716 0.23 -0.4
5,491,671 - PP_5716 0.23 +0.3
5,491,671 - PP_5716 0.23 +0.2
5,491,876 + PP_5716 0.53 +0.6
5,491,876 + PP_5716 0.53 -0.1
5,491,876 + PP_5716 0.53 -0.4
5,491,877 - PP_5716 0.53 -0.1
5,491,898 + PP_5716 0.56 -0.6
5,491,898 + PP_5716 0.56 -0.2
5,491,947 + PP_5716 0.63 -2.5
5,491,947 + PP_5716 0.63 +1.7
5,491,947 + PP_5716 0.63 -0.2
5,491,948 - PP_5716 0.63 +0.6
5,491,948 - PP_5716 0.63 -2.1
5,491,948 - PP_5716 0.63 +0.4
5,491,948 - PP_5716 0.63 -0.2
5,491,948 - PP_5716 0.63 +0.9
5,491,969 + PP_5716 0.66 -1.0
5,492,012 + PP_5716 0.73 -0.1
5,492,012 + PP_5716 0.73 -1.6
5,492,012 + PP_5716 0.73 -0.9
5,492,012 + PP_5716 0.73 -0.4
5,492,012 + PP_5716 0.73 -0.0
5,492,013 - PP_5716 0.73 -0.1
5,492,018 + PP_5716 0.73 +0.2
5,492,018 + PP_5716 0.73 +0.5
5,492,019 - PP_5716 0.74 -0.1
5,492,019 - PP_5716 0.74 +0.2
5,492,019 - PP_5716 0.74 -1.4
5,492,019 - PP_5716 0.74 +0.0
5,492,019 - PP_5716 0.74 +0.7
5,492,049 + PP_5716 0.78 -0.1
5,492,049 + PP_5716 0.78 +0.1
5,492,049 + PP_5716 0.78 -0.1
5,492,050 - PP_5716 0.78 +1.9
5,492,050 - PP_5716 0.78 +0.6
5,492,116 + PP_5716 0.88 -0.3
5,492,116 + PP_5716 0.88 -0.1
5,492,237 + -0.1
5,492,237 + +0.6
5,492,269 - +0.7
5,492,269 - +0.2
5,492,269 - -1.1
5,492,269 - +0.2
5,492,334 + -0.8
5,492,335 - -1.0
5,492,335 - +0.7
5,492,348 - -1.4
5,492,348 - -1.6
5,492,349 + -0.2
5,492,349 + +0.7
5,492,349 + -1.1
5,492,349 + -0.1
5,492,389 + -1.0
5,492,390 - -1.6
5,492,390 - -2.5
5,492,390 - +0.5
5,492,460 - -1.1
5,492,482 + +0.3
5,492,483 - -1.8
5,492,483 - -1.3
5,492,504 + PP_4826 0.11 -0.6
5,492,504 + PP_4826 0.11 +1.1
5,492,504 + PP_4826 0.11 -1.4
5,492,505 - PP_4826 0.11 -0.5
5,492,589 + PP_4826 0.16 -0.8
5,492,590 - PP_4826 0.16 -0.8
5,492,590 - PP_4826 0.16 -2.1
5,492,974 - PP_4826 0.39 -2.5
5,492,974 - PP_4826 0.39 -0.9
5,493,150 - PP_4826 0.49 -0.9
5,493,340 + PP_4826 0.60 -2.2
5,493,340 + PP_4826 0.60 -0.3
5,493,536 + PP_4826 0.72 -0.5
5,493,537 - PP_4826 0.72 -0.5
5,493,573 + PP_4826 0.74 -1.6
5,493,573 + PP_4826 0.74 +0.2
5,493,573 + PP_4826 0.74 -0.7
5,493,573 + PP_4826 0.74 -0.5
5,493,574 - PP_4826 0.74 +1.0
5,493,574 - PP_4826 0.74 -1.4
5,493,574 - PP_4826 0.74 -0.3
5,493,574 - PP_4826 0.74 -1.1
5,493,601 + PP_4826 0.76 +0.3
5,493,854 - -0.3
5,493,940 + -0.6
5,493,940 + -1.0
5,494,046 + -0.3
5,494,118 + PP_4827 0.16 -0.6
5,494,118 + PP_4827 0.16 +0.2
5,494,119 - PP_4827 0.16 -1.3
5,494,119 - PP_4827 0.16 -0.8
5,494,119 - PP_4827 0.16 -1.1
5,494,119 - PP_4827 0.16 -1.6
5,494,119 - PP_4827 0.16 -0.5
5,494,119 - +0.1
5,494,119 - PP_4827 0.16 -2.6
5,494,275 + PP_4827 0.37 -1.4
5,494,379 + PP_4827 0.51 -0.1
5,494,379 + PP_4827 0.51 +0.0
5,494,379 + PP_4827 0.51 +0.2
5,494,379 + PP_4827 0.51 +0.1
5,494,379 + PP_4827 0.51 +0.5
5,494,379 + PP_4827 0.51 -0.8
5,494,379 + PP_4827 0.51 -0.6
5,494,379 + PP_4827 0.51 -0.2
5,494,380 - PP_4827 0.51 -1.3
5,494,380 - PP_4827 0.51 +0.3
5,494,380 - PP_4827 0.51 +0.3
5,494,380 - PP_4827 0.51 -1.1
5,494,380 - PP_4827 0.51 -0.9
5,494,380 - PP_4827 0.51 -1.3
5,494,385 + PP_4827 0.52 -1.0
5,494,385 + PP_4827 0.52 -1.3
5,494,385 + PP_4827 0.52 -0.3
5,494,385 + PP_4827 0.52 -0.5
5,494,385 + PP_4827 0.52 -0.9
5,494,385 + PP_4827 0.52 -0.9
5,494,385 + PP_4827 0.52 -1.4
5,494,385 + PP_4827 0.52 -0.2
5,494,385 + PP_4827 0.52 -0.5
5,494,386 - PP_4827 0.52 -0.2
5,494,386 - PP_4827 0.52 -1.1
5,494,386 - PP_4827 0.52 -0.4
5,494,386 - PP_4827 0.52 +0.7
5,494,386 - PP_4827 0.52 -0.3
5,494,386 - PP_4827 0.52 -0.8
5,494,394 + PP_4827 0.53 -1.8
5,494,395 - PP_4827 0.53 +0.0
5,494,395 - PP_4827 0.53 -2.5
5,494,462 + PP_4827 0.62 +0.4
5,494,462 + PP_4827 0.62 -0.7
5,494,462 + PP_4827 0.62 +0.8
5,494,463 - PP_4827 0.63 +0.3
5,494,463 - PP_4827 0.63 -1.0
5,494,463 - PP_4827 0.63 -1.7
5,494,467 + PP_4827 0.63 -0.8
5,494,467 + PP_4827 0.63 -1.1
5,494,478 + PP_4827 0.65 -0.8
5,494,479 - PP_4827 0.65 +0.3
5,494,503 - PP_4827 0.68 +0.3
5,494,503 - PP_4827 0.68 -0.7
5,494,503 - PP_4827 0.68 -0.3
5,494,503 - PP_4827 0.68 -0.5
5,494,588 - PP_4827 0.80 -0.3
5,494,628 + PP_4827 0.85 -1.5
5,494,937 - PP_4828 0.32 -0.1
5,495,011 - PP_4828 0.44 -0.3

Or see this region's nucleotide sequence