Strain Fitness in Pseudomonas putida KT2440 around PP_2449

Experiment: 2-Ethylhexanol 0.4 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2-Ethylhexanol 0.4 vol%
2,796,256	+				+0.6
2,796,257	-				+0.1
2,796,257	-				-0.5
2,796,257	-				+0.0
2,796,259	+				-0.6
2,796,260	-				+0.1
2,796,334	+				+0.4
2,796,428	-				+1.0
2,796,464	+				-0.4
2,796,465	-				+0.2
2,796,472	-				-0.9
2,796,724	-				+0.4
2,796,748	-		PP_t43	0.10	+1.5
2,796,812	+				-0.1
2,796,878	-				+1.5
2,796,878	-				-1.0
2,796,902	-				-0.1
2,796,914	+				+0.5
2,796,915	-				-1.3
2,796,942	-				-0.1
2,796,967	+				-2.1
2,796,968	-				-2.0
2,796,968	-				-1.6
2,797,144	-		PP_2449	0.34	-1.7
2,797,152	+		PP_2449	0.36	-2.8
2,797,152	+		PP_2449	0.36	-0.7
2,797,152	+		PP_2449	0.36	-2.6
2,797,153	-		PP_2449	0.36	-1.6
2,797,153	-		PP_2449	0.36	-2.6
2,797,179	+		PP_2449	0.41	-1.4
2,797,179	+		PP_2449	0.41	-1.4
2,797,217	+		PP_2449	0.47	-2.0
2,797,218	-		PP_2449	0.47	-2.5
2,797,309	+		PP_2449	0.63	+0.4
2,797,309	+		PP_2449	0.63	-1.8
2,797,310	-		PP_2449	0.64	-0.3
2,797,340	+		PP_2449	0.69	-1.9
2,797,341	-		PP_2449	0.69	-2.0
2,797,515	+				-2.6
2,797,515	+				+0.6
2,797,578	+				-2.1
2,797,579	-				-0.7
2,797,579	-				-1.7
2,797,592	+				+0.6
2,797,593	-				-0.2
2,797,670	+		PP_2450	0.13	+0.2
2,797,670	+		PP_2450	0.13	+0.0
2,797,671	-		PP_2450	0.13	+0.4
2,797,671	-		PP_2450	0.13	+1.0
2,797,691	+		PP_2450	0.18	+0.9
2,797,692	-		PP_2450	0.18	+0.2
2,797,692	-		PP_2450	0.18	+0.6
2,797,692	-		PP_2450	0.18	-0.4
2,797,692	-		PP_2450	0.18	-0.1
2,797,692	-		PP_2450	0.18	+0.0
2,797,693	+		PP_2450	0.18	-1.8
2,797,693	+		PP_2450	0.18	-0.0
2,797,694	-		PP_2450	0.18	-1.2
2,798,025	+				-0.1
2,798,025	+				+0.7
2,798,026	-				+1.2
2,798,148	+		PP_2451	0.15	+0.2
2,798,205	+		PP_2451	0.23	-0.5
2,798,206	-		PP_2451	0.23	-0.7
2,798,206	-		PP_2451	0.23	+1.4
2,798,206	-		PP_2451	0.23	-0.1
2,798,206	-		PP_2451	0.23	-0.2
2,798,206	-		PP_2451	0.23	-0.8
2,798,220	+		PP_2451	0.25	-0.5
2,798,220	+		PP_2451	0.25	+0.4
2,798,220	+		PP_2451	0.25	+0.7
2,798,221	-		PP_2451	0.25	+0.2
2,798,221	-		PP_2451	0.25	-0.0
2,798,226	+		PP_2451	0.26	-0.0
2,798,226	+		PP_2451	0.26	-0.3
2,798,226	+		PP_2451	0.26	-0.6
2,798,227	-		PP_2451	0.26	-0.3
2,798,227	-		PP_2451	0.26	-0.3
2,798,310	+		PP_2451	0.38	+0.0
2,798,310	+		PP_2451	0.38	+0.7
2,798,310	+		PP_2451	0.38	-0.1
2,798,418	+		PP_2451	0.54	+0.5
2,798,418	+		PP_2451	0.54	+0.3
2,798,418	+		PP_2451	0.54	-0.2
2,798,419	-		PP_2451	0.54	-1.7
2,798,499	-		PP_2451	0.66	-1.7