Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2139

Experiment: LB_plus_SM_buffer with 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2138 and GFF2139 are separated by 106 nucleotidesGFF2139 and GFF2140 are separated by 144 nucleotides GFF2138 - Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-), at 25,603 to 27,072 GFF2138 GFF2139 - FIG005080: Possible exported protein, at 27,179 to 30,979 GFF2139 GFF2140 - TldD protein, part of TldE/TldD proteolytic complex, at 31,124 to 32,569 GFF2140 Position (kb) 27 28 29 30 31Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 26.190 kb on - strand, within GFF2138at 26.318 kb on - strand, within GFF2138at 26.318 kb on - strand, within GFF2138at 26.347 kb on + strand, within GFF2138at 26.367 kb on + strand, within GFF2138at 26.380 kb on + strand, within GFF2138at 26.381 kb on - strand, within GFF2138at 26.449 kb on - strand, within GFF2138at 26.449 kb on - strand, within GFF2138at 26.511 kb on - strand, within GFF2138at 26.511 kb on - strand, within GFF2138at 26.514 kb on + strand, within GFF2138at 26.514 kb on + strand, within GFF2138at 26.545 kb on - strand, within GFF2138at 26.658 kb on + strand, within GFF2138at 26.731 kb on - strand, within GFF2138at 26.888 kb on + strand, within GFF2138at 26.905 kb on + strand, within GFF2138at 27.039 kb on + strandat 27.094 kb on - strandat 27.394 kb on + strandat 27.784 kb on - strand, within GFF2139at 28.186 kb on - strand, within GFF2139at 28.632 kb on - strand, within GFF2139at 28.802 kb on + strand, within GFF2139at 28.829 kb on + strand, within GFF2139at 28.830 kb on - strand, within GFF2139at 28.832 kb on - strand, within GFF2139at 28.869 kb on + strand, within GFF2139at 29.024 kb on + strand, within GFF2139at 29.145 kb on + strand, within GFF2139at 29.170 kb on - strand, within GFF2139at 29.233 kb on + strand, within GFF2139at 29.233 kb on + strand, within GFF2139at 29.248 kb on + strand, within GFF2139at 29.369 kb on - strand, within GFF2139at 29.416 kb on + strand, within GFF2139at 29.416 kb on + strand, within GFF2139at 29.435 kb on - strand, within GFF2139at 29.445 kb on + strand, within GFF2139at 29.534 kb on + strand, within GFF2139at 29.534 kb on + strand, within GFF2139at 29.737 kb on + strand, within GFF2139at 29.772 kb on + strand, within GFF2139at 30.052 kb on + strand, within GFF2139at 30.052 kb on + strand, within GFF2139at 30.053 kb on - strand, within GFF2139at 30.056 kb on + strand, within GFF2139at 30.057 kb on - strand, within GFF2139at 30.062 kb on + strand, within GFF2139at 30.062 kb on + strand, within GFF2139at 30.065 kb on + strand, within GFF2139at 30.139 kb on + strand, within GFF2139at 30.211 kb on + strand, within GFF2139at 30.212 kb on - strand, within GFF2139at 30.358 kb on + strand, within GFF2139at 30.359 kb on - strand, within GFF2139at 30.359 kb on - strand, within GFF2139at 30.361 kb on + strand, within GFF2139at 30.361 kb on + strand, within GFF2139at 30.426 kb on + strand, within GFF2139at 30.553 kb on - strand, within GFF2139at 30.587 kb on - strand, within GFF2139at 30.611 kb on - strandat 30.640 kb on + strandat 30.640 kb on + strandat 30.640 kb on + strandat 30.647 kb on - strandat 30.676 kb on - strandat 31.014 kb on - strandat 31.017 kb on + strandat 31.017 kb on + strandat 31.018 kb on - strandat 31.061 kb on - strandat 31.069 kb on - strandat 31.113 kb on + strandat 31.141 kb on - strandat 31.141 kb on - strandat 31.289 kb on - strand, within GFF2140at 31.301 kb on + strand, within GFF2140at 31.302 kb on - strand, within GFF2140at 31.303 kb on + strand, within GFF2140at 31.374 kb on + strand, within GFF2140at 31.608 kb on + strand, within GFF2140at 31.608 kb on + strand, within GFF2140at 31.618 kb on - strand, within GFF2140at 31.751 kb on + strand, within GFF2140at 31.962 kb on + strand, within GFF2140at 31.962 kb on + strand, within GFF2140at 31.963 kb on - strand, within GFF2140

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 15 MOI
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26,190 - GFF2138 0.40 +0.8
26,318 - GFF2138 0.49 -0.4
26,318 - GFF2138 0.49 +1.1
26,347 + GFF2138 0.51 +0.1
26,367 + GFF2138 0.52 +0.3
26,380 + GFF2138 0.53 +0.1
26,381 - GFF2138 0.53 +0.3
26,449 - GFF2138 0.58 +0.6
26,449 - GFF2138 0.58 +0.3
26,511 - GFF2138 0.62 -0.5
26,511 - GFF2138 0.62 -0.9
26,514 + GFF2138 0.62 -0.5
26,514 + GFF2138 0.62 +0.0
26,545 - GFF2138 0.64 +0.4
26,658 + GFF2138 0.72 +1.1
26,731 - GFF2138 0.77 +0.4
26,888 + GFF2138 0.87 +1.5
26,905 + GFF2138 0.89 -0.2
27,039 + +0.5
27,094 - -0.5
27,394 + -1.4
27,784 - GFF2139 0.16 -0.2
28,186 - GFF2139 0.26 -0.8
28,632 - GFF2139 0.38 +0.5
28,802 + GFF2139 0.43 +0.0
28,829 + GFF2139 0.43 +0.6
28,830 - GFF2139 0.43 +0.8
28,832 - GFF2139 0.43 -0.2
28,869 + GFF2139 0.44 +0.0
29,024 + GFF2139 0.49 +0.3
29,145 + GFF2139 0.52 +0.2
29,170 - GFF2139 0.52 +0.5
29,233 + GFF2139 0.54 +0.1
29,233 + GFF2139 0.54 -0.3
29,248 + GFF2139 0.54 -0.2
29,369 - GFF2139 0.58 +0.4
29,416 + GFF2139 0.59 -0.4
29,416 + GFF2139 0.59 +2.6
29,435 - GFF2139 0.59 -0.2
29,445 + GFF2139 0.60 +0.3
29,534 + GFF2139 0.62 +0.4
29,534 + GFF2139 0.62 +0.4
29,737 + GFF2139 0.67 -0.1
29,772 + GFF2139 0.68 +0.1
30,052 + GFF2139 0.76 -0.1
30,052 + GFF2139 0.76 +0.3
30,053 - GFF2139 0.76 -0.1
30,056 + GFF2139 0.76 -0.9
30,057 - GFF2139 0.76 +0.1
30,062 + GFF2139 0.76 +0.2
30,062 + GFF2139 0.76 +0.2
30,065 + GFF2139 0.76 -0.9
30,139 + GFF2139 0.78 +0.2
30,211 + GFF2139 0.80 -0.0
30,212 - GFF2139 0.80 -1.3
30,358 + GFF2139 0.84 -0.0
30,359 - GFF2139 0.84 -1.7
30,359 - GFF2139 0.84 -1.3
30,361 + GFF2139 0.84 +2.6
30,361 + GFF2139 0.84 +1.0
30,426 + GFF2139 0.85 +0.0
30,553 - GFF2139 0.89 -0.2
30,587 - GFF2139 0.90 +0.3
30,611 - -1.2
30,640 + +1.1
30,640 + -0.6
30,640 + +0.4
30,647 - -0.1
30,676 - -0.4
31,014 - +0.8
31,017 + -0.0
31,017 + +0.7
31,018 - +0.7
31,061 - +0.4
31,069 - +0.1
31,113 + -0.7
31,141 - -0.6
31,141 - +1.0
31,289 - GFF2140 0.11 -0.2
31,301 + GFF2140 0.12 -0.0
31,302 - GFF2140 0.12 -1.2
31,303 + GFF2140 0.12 -0.9
31,374 + GFF2140 0.17 -0.2
31,608 + GFF2140 0.33 +0.5
31,608 + GFF2140 0.33 -3.7
31,618 - GFF2140 0.34 -0.1
31,751 + GFF2140 0.43 -0.7
31,962 + GFF2140 0.58 +0.1
31,962 + GFF2140 0.58 -2.0
31,963 - GFF2140 0.58 +1.1

Or see this region's nucleotide sequence