Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2058

Experiment: LB_plus_SM_buffer with 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2056 and GFF2057 overlap by 11 nucleotidesGFF2057 and GFF2058 overlap by 1 nucleotidesGFF2058 and GFF2059 overlap by 1 nucleotides GFF2056 - Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25), at 20,649 to 21,746 GFF2056 GFF2057 - Sulfate transport system permease protein CysW, at 21,736 to 22,611 GFF2057 GFF2058 - Sulfate transport system permease protein CysT, at 22,611 to 23,444 GFF2058 GFF2059 - Sulfate and thiosulfate binding protein CysP, at 23,444 to 24,460 GFF2059 Position (kb) 22 23 24Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 21.832 kb on + strand, within GFF2057at 21.875 kb on + strand, within GFF2057at 21.901 kb on + strand, within GFF2057at 22.003 kb on + strand, within GFF2057at 22.004 kb on - strand, within GFF2057at 22.066 kb on + strand, within GFF2057at 22.310 kb on - strand, within GFF2057at 22.310 kb on - strand, within GFF2057at 22.620 kb on + strandat 22.621 kb on - strandat 23.031 kb on - strand, within GFF2058at 23.071 kb on + strand, within GFF2058at 23.072 kb on - strand, within GFF2058at 23.239 kb on - strand, within GFF2058at 23.361 kb on + strandat 23.361 kb on + strandat 23.405 kb on + strandat 23.449 kb on + strandat 23.450 kb on - strandat 23.566 kb on + strand, within GFF2059at 23.567 kb on - strand, within GFF2059at 23.610 kb on + strand, within GFF2059at 23.610 kb on + strand, within GFF2059at 23.611 kb on - strand, within GFF2059at 23.779 kb on - strand, within GFF2059at 23.779 kb on - strand, within GFF2059at 23.815 kb on + strand, within GFF2059at 23.976 kb on + strand, within GFF2059at 24.201 kb on + strand, within GFF2059at 24.274 kb on + strand, within GFF2059at 24.275 kb on - strand, within GFF2059at 24.364 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 15 MOI
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21,832 + GFF2057 0.11 +0.3
21,875 + GFF2057 0.16 +0.8
21,901 + GFF2057 0.19 +0.8
22,003 + GFF2057 0.30 +0.5
22,004 - GFF2057 0.31 +0.2
22,066 + GFF2057 0.38 -1.3
22,310 - GFF2057 0.66 +0.2
22,310 - GFF2057 0.66 -0.1
22,620 + +1.9
22,621 - -1.2
23,031 - GFF2058 0.50 +0.4
23,071 + GFF2058 0.55 -0.5
23,072 - GFF2058 0.55 +0.1
23,239 - GFF2058 0.75 -1.2
23,361 + -3.6
23,361 + +0.3
23,405 + -0.4
23,449 + +1.4
23,450 - +0.1
23,566 + GFF2059 0.12 -1.1
23,567 - GFF2059 0.12 -1.0
23,610 + GFF2059 0.16 -0.7
23,610 + GFF2059 0.16 -0.2
23,611 - GFF2059 0.16 -0.6
23,779 - GFF2059 0.33 -0.5
23,779 - GFF2059 0.33 +1.0
23,815 + GFF2059 0.36 +0.1
23,976 + GFF2059 0.52 -1.0
24,201 + GFF2059 0.74 -0.7
24,274 + GFF2059 0.82 +0.1
24,275 - GFF2059 0.82 -0.8
24,364 - -0.2

Or see this region's nucleotide sequence