Experiment: LB_plus_SM_buffer with 6F2_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1909 and GFF1910 are separated by 5 nucleotides GFF1910 and GFF1911 are separated by 56 nucleotides GFF1911 and GFF1912 are separated by 55 nucleotides
GFF1909 - Transcriptional regulator, LacI family, at 103,773 to 104,792
GFF1909
GFF1910 - Putative Nudix hydrolase YfcD (EC 3.6.-.-), at 104,798 to 105,352
GFF1910
GFF1911 - FIG002292: Phosphodiesterase yfcE (EC 3.1.4.-), at 105,409 to 105,960
GFF1911
GFF1912 - Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog, at 106,016 to 106,660
GFF1912
Position (kb)
104
105
106 Strain fitness (log2 ratio)
-1
0
1
2 at 103.939 kb on - strand, within GFF1909 at 103.940 kb on + strand, within GFF1909 at 103.940 kb on + strand, within GFF1909 at 103.941 kb on - strand, within GFF1909 at 104.081 kb on + strand, within GFF1909 at 104.265 kb on - strand, within GFF1909 at 104.276 kb on + strand, within GFF1909 at 104.299 kb on - strand, within GFF1909 at 104.423 kb on + strand, within GFF1909 at 104.423 kb on + strand, within GFF1909 at 104.423 kb on + strand, within GFF1909 at 104.424 kb on - strand, within GFF1909 at 104.424 kb on - strand, within GFF1909 at 104.444 kb on + strand, within GFF1909 at 104.531 kb on - strand, within GFF1909 at 104.563 kb on + strand, within GFF1909 at 104.770 kb on + strand at 104.770 kb on + strand at 104.770 kb on + strand at 104.770 kb on + strand at 104.771 kb on - strand at 105.067 kb on + strand, within GFF1910 at 105.149 kb on + strand, within GFF1910 at 105.150 kb on - strand, within GFF1910 at 105.150 kb on - strand, within GFF1910 at 105.154 kb on + strand, within GFF1910 at 105.228 kb on + strand, within GFF1910 at 105.229 kb on - strand, within GFF1910 at 105.325 kb on + strand at 105.367 kb on - strand at 105.381 kb on + strand at 105.417 kb on + strand at 105.417 kb on + strand at 105.545 kb on + strand, within GFF1911 at 105.582 kb on + strand, within GFF1911 at 105.582 kb on + strand, within GFF1911 at 105.812 kb on + strand, within GFF1911 at 105.859 kb on + strand, within GFF1911 at 106.290 kb on - strand, within GFF1912
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 15 MOI remove 103,939 - GFF1909 0.16 -1.1 103,940 + GFF1909 0.16 +0.4 103,940 + GFF1909 0.16 -0.1 103,941 - GFF1909 0.16 +0.7 104,081 + GFF1909 0.30 +0.1 104,265 - GFF1909 0.48 -0.9 104,276 + GFF1909 0.49 +2.1 104,299 - GFF1909 0.52 +0.6 104,423 + GFF1909 0.64 -1.0 104,423 + GFF1909 0.64 -1.6 104,423 + GFF1909 0.64 +0.4 104,424 - GFF1909 0.64 -0.6 104,424 - GFF1909 0.64 +0.0 104,444 + GFF1909 0.66 -0.1 104,531 - GFF1909 0.74 -1.2 104,563 + GFF1909 0.77 -0.6 104,770 + +0.1 104,770 + -0.0 104,770 + -0.3 104,770 + -0.1 104,771 - +1.7 105,067 + GFF1910 0.48 -1.6 105,149 + GFF1910 0.63 -0.8 105,150 - GFF1910 0.63 -0.6 105,150 - GFF1910 0.63 -1.3 105,154 + GFF1910 0.64 +0.8 105,228 + GFF1910 0.77 -1.2 105,229 - GFF1910 0.78 +0.2 105,325 + -0.2 105,367 - -0.8 105,381 + -0.1 105,417 + -1.2 105,417 + -0.3 105,545 + GFF1911 0.25 -0.2 105,582 + GFF1911 0.31 +0.5 105,582 + GFF1911 0.31 +0.5 105,812 + GFF1911 0.73 -0.3 105,859 + GFF1911 0.82 -0.3 106,290 - GFF1912 0.42 -0.6
Or see this region's nucleotide sequence