Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1851

Experiment: LB_plus_SM_buffer with 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1849 and GFF1850 are separated by 5 nucleotidesGFF1850 and GFF1851 are separated by 25 nucleotidesGFF1851 and GFF1852 are separated by 55 nucleotides GFF1849 - Molybdopterin binding motif, CinA N-terminal domain / C-terminal domain of CinA type E, at 42,251 to 42,427 GFF1849 GFF1850 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.-), at 42,433 to 43,236 GFF1850 GFF1851 - L-rhamnonate transporter (predicted by genome context), at 43,262 to 44,551 GFF1851 GFF1852 - L-rhamnonate dehydratase (EC 4.2.1.90), at 44,607 to 45,812 GFF1852 Position (kb) 43 44 45Strain fitness (log2 ratio) -3 -2 -1 0 1at 42.331 kb on + strand, within GFF1849at 42.365 kb on + strand, within GFF1849at 42.377 kb on - strand, within GFF1849at 42.379 kb on - strand, within GFF1849at 42.519 kb on + strand, within GFF1850at 42.520 kb on - strand, within GFF1850at 42.520 kb on - strand, within GFF1850at 42.627 kb on - strand, within GFF1850at 42.680 kb on + strand, within GFF1850at 42.823 kb on - strand, within GFF1850at 42.823 kb on - strand, within GFF1850at 42.824 kb on + strand, within GFF1850at 42.825 kb on - strand, within GFF1850at 42.825 kb on - strand, within GFF1850at 42.999 kb on + strand, within GFF1850at 43.000 kb on - strand, within GFF1850at 43.054 kb on + strand, within GFF1850at 43.065 kb on - strand, within GFF1850at 43.102 kb on + strand, within GFF1850at 43.103 kb on - strand, within GFF1850at 43.105 kb on + strand, within GFF1850at 43.147 kb on - strand, within GFF1850at 43.148 kb on + strand, within GFF1850at 43.148 kb on + strand, within GFF1850at 43.149 kb on - strand, within GFF1850at 43.418 kb on - strand, within GFF1851at 43.485 kb on - strand, within GFF1851at 43.508 kb on + strand, within GFF1851at 43.669 kb on + strand, within GFF1851at 43.739 kb on - strand, within GFF1851at 43.791 kb on - strand, within GFF1851at 43.813 kb on - strand, within GFF1851at 43.816 kb on + strand, within GFF1851at 43.906 kb on + strand, within GFF1851at 44.115 kb on + strand, within GFF1851at 44.116 kb on - strand, within GFF1851at 44.169 kb on - strand, within GFF1851at 44.169 kb on - strand, within GFF1851at 44.225 kb on + strand, within GFF1851at 44.421 kb on - strand, within GFF1851at 44.474 kb on + strandat 44.474 kb on + strandat 44.478 kb on + strandat 44.492 kb on - strandat 44.501 kb on + strandat 44.537 kb on + strandat 44.616 kb on - strandat 44.617 kb on + strandat 44.795 kb on + strand, within GFF1852at 44.804 kb on + strand, within GFF1852at 44.807 kb on + strand, within GFF1852at 44.931 kb on - strand, within GFF1852at 44.933 kb on + strand, within GFF1852at 45.046 kb on + strand, within GFF1852at 45.046 kb on + strand, within GFF1852at 45.354 kb on - strand, within GFF1852at 45.448 kb on + strand, within GFF1852at 45.449 kb on - strand, within GFF1852at 45.451 kb on + strand, within GFF1852at 45.451 kb on + strand, within GFF1852at 45.525 kb on - strand, within GFF1852

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 15 MOI
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42,331 + GFF1849 0.45 -0.1
42,365 + GFF1849 0.64 -0.1
42,377 - GFF1849 0.71 +0.3
42,379 - GFF1849 0.72 +0.4
42,519 + GFF1850 0.11 -0.2
42,520 - GFF1850 0.11 -0.2
42,520 - GFF1850 0.11 +0.8
42,627 - GFF1850 0.24 -0.6
42,680 + GFF1850 0.31 -0.1
42,823 - GFF1850 0.49 +0.5
42,823 - GFF1850 0.49 -1.8
42,824 + GFF1850 0.49 +0.3
42,825 - GFF1850 0.49 +0.5
42,825 - GFF1850 0.49 +0.1
42,999 + GFF1850 0.70 +0.4
43,000 - GFF1850 0.71 +0.2
43,054 + GFF1850 0.77 +0.4
43,065 - GFF1850 0.79 +0.4
43,102 + GFF1850 0.83 +0.3
43,103 - GFF1850 0.83 -2.8
43,105 + GFF1850 0.84 +0.6
43,147 - GFF1850 0.89 -0.1
43,148 + GFF1850 0.89 +0.2
43,148 + GFF1850 0.89 -0.4
43,149 - GFF1850 0.89 +0.5
43,418 - GFF1851 0.12 -0.6
43,485 - GFF1851 0.17 -0.0
43,508 + GFF1851 0.19 +0.1
43,669 + GFF1851 0.32 +0.8
43,739 - GFF1851 0.37 +0.6
43,791 - GFF1851 0.41 +1.2
43,813 - GFF1851 0.43 +0.2
43,816 + GFF1851 0.43 -1.0
43,906 + GFF1851 0.50 +0.1
44,115 + GFF1851 0.66 +0.6
44,116 - GFF1851 0.66 -0.1
44,169 - GFF1851 0.70 -0.0
44,169 - GFF1851 0.70 -0.0
44,225 + GFF1851 0.75 -0.8
44,421 - GFF1851 0.90 -0.3
44,474 + -0.1
44,474 + -0.2
44,478 + +0.4
44,492 - +0.5
44,501 + +0.1
44,537 + +0.2
44,616 - -0.6
44,617 + +0.0
44,795 + GFF1852 0.16 +0.2
44,804 + GFF1852 0.16 +0.9
44,807 + GFF1852 0.17 +1.2
44,931 - GFF1852 0.27 -0.5
44,933 + GFF1852 0.27 +0.2
45,046 + GFF1852 0.36 +1.2
45,046 + GFF1852 0.36 -0.8
45,354 - GFF1852 0.62 +0.8
45,448 + GFF1852 0.70 +0.6
45,449 - GFF1852 0.70 +0.0
45,451 + GFF1852 0.70 -0.2
45,451 + GFF1852 0.70 -0.6
45,525 - GFF1852 0.76 -0.1

Or see this region's nucleotide sequence