Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1774

Experiment: LB_plus_SM_buffer with 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1772 and GFF1773 overlap by 8 nucleotidesGFF1773 and GFF1774 are separated by 189 nucleotides GFF1772 - Trimethylamine-N-oxide reductase (EC 1.6.6.9), at 76,477 to 79,029 GFF1772 GFF1773 - Chaperone protein TorD, at 79,022 to 79,654 GFF1773 GFF1774 - Cytochrome c551 peroxidase (EC 1.11.1.5), at 79,844 to 81,244 GFF1774 Position (kb) 79 80 81 82Strain fitness (log2 ratio) -2 -1 0 1 2at 78.846 kb on + strandat 78.851 kb on + strandat 78.852 kb on - strandat 78.854 kb on + strandat 78.871 kb on - strandat 78.871 kb on - strandat 78.904 kb on - strandat 78.928 kb on + strandat 78.940 kb on - strandat 78.994 kb on + strandat 78.994 kb on + strandat 79.027 kb on + strandat 79.056 kb on - strandat 79.065 kb on + strandat 79.066 kb on - strandat 79.068 kb on - strandat 79.068 kb on - strandat 79.068 kb on - strandat 79.119 kb on + strand, within GFF1773at 79.120 kb on - strand, within GFF1773at 79.916 kb on + strandat 79.928 kb on + strandat 80.093 kb on + strand, within GFF1774at 80.231 kb on + strand, within GFF1774at 80.369 kb on - strand, within GFF1774at 80.410 kb on - strand, within GFF1774at 80.423 kb on + strand, within GFF1774at 80.890 kb on + strand, within GFF1774at 81.080 kb on + strand, within GFF1774at 81.081 kb on - strand, within GFF1774at 81.179 kb on - strandat 81.214 kb on + strandat 81.222 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 15 MOI
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78,846 + -1.1
78,851 + -0.0
78,852 - -0.0
78,854 + -0.1
78,871 - -0.3
78,871 - -0.3
78,904 - -1.3
78,928 + +0.3
78,940 - +0.4
78,994 + +0.1
78,994 + +0.5
79,027 + +0.2
79,056 - -0.4
79,065 + +0.3
79,066 - +0.2
79,068 - -0.8
79,068 - +0.2
79,068 - -1.6
79,119 + GFF1773 0.15 +2.1
79,120 - GFF1773 0.15 -0.0
79,916 + +0.6
79,928 + -0.2
80,093 + GFF1774 0.18 -0.8
80,231 + GFF1774 0.28 +2.2
80,369 - GFF1774 0.37 -2.3
80,410 - GFF1774 0.40 -1.1
80,423 + GFF1774 0.41 -0.0
80,890 + GFF1774 0.75 -1.1
81,080 + GFF1774 0.88 -0.3
81,081 - GFF1774 0.88 -0.4
81,179 - -0.1
81,214 + -0.0
81,222 - +1.0

Or see this region's nucleotide sequence