Experiment: spermidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0885 and Atu0886 are separated by 104 nucleotides Atu0886 and Atu0887 are separated by 21 nucleotides Atu0887 and Atu0888 are separated by 204 nucleotides Atu0888 and Atu0889 are separated by 31 nucleotides
Atu0885: Atu0885 - hypothetical protein, at 878,925 to 879,239
Atu0885
Atu0886: Atu0886 - hypothetical protein, at 879,344 to 879,910
Atu0886
Atu0887: Atu0887 - acetyltransferase, at 879,932 to 880,420
Atu0887
Atu0888: Atu0888 - transcriptional regulator, MerR family, at 880,625 to 881,038
Atu0888
Atu0889: Atu0889 - hypothetical protein, at 881,070 to 881,483
Atu0889
Position (kb) 879
880
881 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 879.067 kb on + strand, within Atu0885 at 879.094 kb on + strand, within Atu0885 at 879.158 kb on - strand, within Atu0885 at 879.212 kb on + strand at 879.257 kb on - strand at 879.283 kb on - strand at 879.293 kb on + strand at 879.390 kb on + strand at 879.580 kb on - strand, within Atu0886 at 879.801 kb on + strand, within Atu0886 at 879.953 kb on + strand at 880.134 kb on + strand, within Atu0887 at 880.144 kb on + strand, within Atu0887 at 880.178 kb on - strand, within Atu0887 at 880.181 kb on - strand, within Atu0887 at 880.218 kb on + strand, within Atu0887 at 880.280 kb on - strand, within Atu0887 at 880.311 kb on + strand, within Atu0887 at 880.356 kb on - strand, within Atu0887 at 880.396 kb on + strand at 880.396 kb on + strand at 880.396 kb on + strand at 880.555 kb on - strand at 880.555 kb on - strand at 880.623 kb on + strand at 880.631 kb on - strand at 880.631 kb on - strand at 880.671 kb on + strand, within Atu0888 at 880.707 kb on + strand, within Atu0888 at 880.818 kb on - strand, within Atu0888 at 880.867 kb on - strand, within Atu0888 at 880.872 kb on - strand, within Atu0888 at 880.986 kb on + strand, within Atu0888 at 881.132 kb on - strand, within Atu0889 at 881.137 kb on - strand, within Atu0889 at 881.191 kb on + strand, within Atu0889 at 881.221 kb on - strand, within Atu0889 at 881.245 kb on - strand, within Atu0889 at 881.355 kb on + strand, within Atu0889 at 881.373 kb on - strand, within Atu0889 at 881.385 kb on + strand, within Atu0889 at 881.416 kb on - strand, within Atu0889
Per-strain Table
Position Strand Gene LocusTag Fraction spermidine (N) remove 879,067 + Atu0885 0.45 -0.2 879,094 + Atu0885 0.54 -0.1 879,158 - Atu0885 0.74 +0.2 879,212 + -0.5 879,257 - -0.2 879,283 - -0.1 879,293 + -0.2 879,390 + -0.9 879,580 - Atu0886 0.42 -0.7 879,801 + Atu0886 0.81 +0.3 879,953 + -2.9 880,134 + Atu0887 0.41 -0.5 880,144 + Atu0887 0.43 -0.9 880,178 - Atu0887 0.50 +0.8 880,181 - Atu0887 0.51 -0.1 880,218 + Atu0887 0.58 -0.7 880,280 - Atu0887 0.71 -1.2 880,311 + Atu0887 0.78 +0.0 880,356 - Atu0887 0.87 -0.4 880,396 + -0.9 880,396 + -0.6 880,396 + +0.1 880,555 - -0.3 880,555 - +0.8 880,623 + +0.0 880,631 - +0.6 880,631 - +0.2 880,671 + Atu0888 0.11 -0.1 880,707 + Atu0888 0.20 -0.0 880,818 - Atu0888 0.47 +0.8 880,867 - Atu0888 0.58 -0.1 880,872 - Atu0888 0.60 +2.3 880,986 + Atu0888 0.87 +0.1 881,132 - Atu0889 0.15 -0.4 881,137 - Atu0889 0.16 -1.1 881,191 + Atu0889 0.29 -0.5 881,221 - Atu0889 0.36 -0.4 881,245 - Atu0889 0.42 -0.1 881,355 + Atu0889 0.69 -0.0 881,373 - Atu0889 0.73 +0.5 881,385 + Atu0889 0.76 -1.9 881,416 - Atu0889 0.84 -0.0
Or see this region's nucleotide sequence