Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_66

Experiment: L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_64 and PfGW456L13_65 overlap by 1 nucleotidesPfGW456L13_65 and PfGW456L13_66 overlap by 4 nucleotidesPfGW456L13_66 and PfGW456L13_67 overlap by 8 nucleotides PfGW456L13_64 - Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-3b C17-methyltransferase, at 74,786 to 76,492 _64 PfGW456L13_65 - Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130), at 76,492 to 77,226 _65 PfGW456L13_66 - Cobalt-precorrin-8x methylmutase (EC 5.4.1.2), at 77,223 to 77,849 _66 PfGW456L13_67 - Cobalamin biosynthesis protein CobG, at 77,842 to 79,113 _67 Position (kb) 77 78Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 76.326 kb on + strandat 76.359 kb on + strandat 76.360 kb on - strandat 76.416 kb on + strandat 76.416 kb on + strandat 76.417 kb on - strandat 76.429 kb on + strandat 76.430 kb on - strandat 76.430 kb on - strandat 76.432 kb on + strandat 76.433 kb on - strandat 76.433 kb on - strandat 76.433 kb on - strandat 76.433 kb on - strandat 76.535 kb on + strandat 76.535 kb on + strandat 76.607 kb on + strand, within PfGW456L13_65at 76.608 kb on - strand, within PfGW456L13_65at 76.608 kb on - strand, within PfGW456L13_65at 76.608 kb on - strand, within PfGW456L13_65at 76.608 kb on - strand, within PfGW456L13_65at 76.608 kb on - strand, within PfGW456L13_65at 76.769 kb on + strand, within PfGW456L13_65at 76.868 kb on + strand, within PfGW456L13_65at 76.868 kb on + strand, within PfGW456L13_65at 76.868 kb on + strand, within PfGW456L13_65at 76.868 kb on + strand, within PfGW456L13_65at 76.868 kb on + strand, within PfGW456L13_65at 76.869 kb on - strand, within PfGW456L13_65at 76.869 kb on - strand, within PfGW456L13_65at 76.869 kb on - strand, within PfGW456L13_65at 76.869 kb on - strand, within PfGW456L13_65at 76.869 kb on - strand, within PfGW456L13_65at 76.869 kb on - strand, within PfGW456L13_65at 76.869 kb on - strand, within PfGW456L13_65at 76.869 kb on - strand, within PfGW456L13_65at 76.874 kb on + strand, within PfGW456L13_65at 76.874 kb on + strand, within PfGW456L13_65at 76.874 kb on + strand, within PfGW456L13_65at 76.874 kb on + strand, within PfGW456L13_65at 76.874 kb on + strand, within PfGW456L13_65at 76.874 kb on + strand, within PfGW456L13_65at 76.874 kb on + strand, within PfGW456L13_65at 76.874 kb on + strand, within PfGW456L13_65at 76.874 kb on + strand, within PfGW456L13_65at 76.874 kb on + strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.883 kb on + strand, within PfGW456L13_65at 76.883 kb on + strand, within PfGW456L13_65at 76.884 kb on - strand, within PfGW456L13_65at 76.884 kb on - strand, within PfGW456L13_65at 76.884 kb on - strand, within PfGW456L13_65at 76.884 kb on - strand, within PfGW456L13_65at 76.967 kb on + strand, within PfGW456L13_65at 76.968 kb on - strand, within PfGW456L13_65at 76.968 kb on - strand, within PfGW456L13_65at 76.991 kb on + strand, within PfGW456L13_65at 76.992 kb on - strand, within PfGW456L13_65at 76.992 kb on - strand, within PfGW456L13_65at 76.992 kb on - strand, within PfGW456L13_65at 77.117 kb on + strand, within PfGW456L13_65at 77.117 kb on + strand, within PfGW456L13_65at 77.117 kb on + strand, within PfGW456L13_65at 77.117 kb on + strand, within PfGW456L13_65at 77.118 kb on - strand, within PfGW456L13_65at 77.118 kb on - strand, within PfGW456L13_65at 77.425 kb on + strand, within PfGW456L13_66at 77.425 kb on + strand, within PfGW456L13_66at 77.425 kb on + strand, within PfGW456L13_66at 77.815 kb on + strandat 77.815 kb on + strandat 77.816 kb on - strandat 77.816 kb on - strandat 77.816 kb on - strandat 77.816 kb on - strandat 77.839 kb on + strandat 77.839 kb on + strandat 77.839 kb on + strandat 77.839 kb on + strandat 77.839 kb on + strandat 77.839 kb on + strandat 77.839 kb on + strandat 77.840 kb on - strandat 77.840 kb on - strandat 77.840 kb on - strandat 77.840 kb on - strandat 77.840 kb on - strandat 77.840 kb on - strandat 77.840 kb on - strandat 77.840 kb on - strandat 77.840 kb on - strandat 77.840 kb on - strandat 77.840 kb on - strandat 77.898 kb on + strandat 77.898 kb on + strandat 77.898 kb on + strandat 77.898 kb on + strandat 77.899 kb on - strandat 77.899 kb on - strandat 77.899 kb on - strandat 77.899 kb on - strandat 77.899 kb on - strandat 77.899 kb on - strandat 77.901 kb on + strandat 77.901 kb on + strandat 77.902 kb on - strandat 77.902 kb on - strandat 77.902 kb on - strandat 77.902 kb on - strandat 77.964 kb on - strandat 77.964 kb on - strandat 77.987 kb on - strand, within PfGW456L13_67at 77.987 kb on - strand, within PfGW456L13_67at 78.078 kb on + strand, within PfGW456L13_67at 78.079 kb on - strand, within PfGW456L13_67at 78.079 kb on - strand, within PfGW456L13_67at 78.079 kb on - strand, within PfGW456L13_67at 78.121 kb on - strand, within PfGW456L13_67at 78.365 kb on + strand, within PfGW456L13_67at 78.365 kb on + strand, within PfGW456L13_67at 78.365 kb on + strand, within PfGW456L13_67at 78.365 kb on + strand, within PfGW456L13_67at 78.366 kb on - strand, within PfGW456L13_67at 78.366 kb on - strand, within PfGW456L13_67at 78.366 kb on - strand, within PfGW456L13_67at 78.366 kb on - strand, within PfGW456L13_67at 78.366 kb on - strand, within PfGW456L13_67at 78.366 kb on - strand, within PfGW456L13_67at 78.366 kb on - strand, within PfGW456L13_67at 78.366 kb on - strand, within PfGW456L13_67at 78.571 kb on + strand, within PfGW456L13_67

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (N)
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76,326 + -0.2
76,359 + +0.5
76,360 - -1.4
76,416 + -3.2
76,416 + -1.6
76,417 - -1.0
76,429 + -1.4
76,430 - -1.0
76,430 - -1.6
76,432 + -1.3
76,433 - -0.5
76,433 - -0.3
76,433 - -0.2
76,433 - -0.2
76,535 + -1.3
76,535 + -1.0
76,607 + PfGW456L13_65 0.16 +0.5
76,608 - PfGW456L13_65 0.16 -1.2
76,608 - PfGW456L13_65 0.16 -2.3
76,608 - PfGW456L13_65 0.16 -1.2
76,608 - PfGW456L13_65 0.16 -1.0
76,608 - PfGW456L13_65 0.16 +2.3
76,769 + PfGW456L13_65 0.38 -0.2
76,868 + PfGW456L13_65 0.51 -1.8
76,868 + PfGW456L13_65 0.51 +0.2
76,868 + PfGW456L13_65 0.51 -0.4
76,868 + PfGW456L13_65 0.51 -0.5
76,868 + PfGW456L13_65 0.51 +0.3
76,869 - PfGW456L13_65 0.51 -1.0
76,869 - PfGW456L13_65 0.51 -1.5
76,869 - PfGW456L13_65 0.51 -1.2
76,869 - PfGW456L13_65 0.51 +0.1
76,869 - PfGW456L13_65 0.51 -1.3
76,869 - PfGW456L13_65 0.51 -0.5
76,869 - PfGW456L13_65 0.51 -0.8
76,869 - PfGW456L13_65 0.51 -0.3
76,874 + PfGW456L13_65 0.52 +0.3
76,874 + PfGW456L13_65 0.52 -1.4
76,874 + PfGW456L13_65 0.52 -1.4
76,874 + PfGW456L13_65 0.52 -0.3
76,874 + PfGW456L13_65 0.52 +0.1
76,874 + PfGW456L13_65 0.52 -1.1
76,874 + PfGW456L13_65 0.52 -1.8
76,874 + PfGW456L13_65 0.52 -1.1
76,874 + PfGW456L13_65 0.52 +0.0
76,874 + PfGW456L13_65 0.52 -0.9
76,875 - PfGW456L13_65 0.52 -0.2
76,875 - PfGW456L13_65 0.52 +0.5
76,875 - PfGW456L13_65 0.52 -2.2
76,875 - PfGW456L13_65 0.52 -0.6
76,875 - PfGW456L13_65 0.52 +0.6
76,875 - PfGW456L13_65 0.52 -1.2
76,875 - PfGW456L13_65 0.52 -0.0
76,875 - PfGW456L13_65 0.52 -0.8
76,875 - PfGW456L13_65 0.52 -0.2
76,875 - PfGW456L13_65 0.52 -1.2
76,875 - PfGW456L13_65 0.52 -0.4
76,883 + PfGW456L13_65 0.53 +0.2
76,883 + PfGW456L13_65 0.53 -0.1
76,884 - PfGW456L13_65 0.53 -0.2
76,884 - PfGW456L13_65 0.53 +0.3
76,884 - PfGW456L13_65 0.53 -0.3
76,884 - PfGW456L13_65 0.53 -1.8
76,967 + PfGW456L13_65 0.65 +0.1
76,968 - PfGW456L13_65 0.65 -1.7
76,968 - PfGW456L13_65 0.65 -1.6
76,991 + PfGW456L13_65 0.68 -1.6
76,992 - PfGW456L13_65 0.68 +0.9
76,992 - PfGW456L13_65 0.68 -0.7
76,992 - PfGW456L13_65 0.68 -0.6
77,117 + PfGW456L13_65 0.85 -1.2
77,117 + PfGW456L13_65 0.85 -1.0
77,117 + PfGW456L13_65 0.85 -1.5
77,117 + PfGW456L13_65 0.85 -0.1
77,118 - PfGW456L13_65 0.85 -1.6
77,118 - PfGW456L13_65 0.85 -0.2
77,425 + PfGW456L13_66 0.32 -0.8
77,425 + PfGW456L13_66 0.32 -1.7
77,425 + PfGW456L13_66 0.32 +0.4
77,815 + -0.8
77,815 + +0.3
77,816 - -0.9
77,816 - -0.5
77,816 - -0.9
77,816 - -0.2
77,839 + -1.1
77,839 + +0.1
77,839 + -1.4
77,839 + -1.2
77,839 + +0.1
77,839 + -0.3
77,839 + -0.3
77,840 - +0.1
77,840 - +0.5
77,840 - -0.4
77,840 - -1.0
77,840 - -0.4
77,840 - +0.1
77,840 - -0.4
77,840 - +0.2
77,840 - -1.5
77,840 - -0.2
77,840 - -1.6
77,898 + -0.8
77,898 + -0.8
77,898 + +0.0
77,898 + -0.1
77,899 - -0.6
77,899 - -3.0
77,899 - -0.2
77,899 - -2.0
77,899 - -2.0
77,899 - -1.7
77,901 + -1.2
77,901 + -0.8
77,902 - -1.3
77,902 - -1.0
77,902 - -0.8
77,902 - -3.7
77,964 - +0.0
77,964 - -0.8
77,987 - PfGW456L13_67 0.11 -1.6
77,987 - PfGW456L13_67 0.11 -3.4
78,078 + PfGW456L13_67 0.19 +1.0
78,079 - PfGW456L13_67 0.19 -0.4
78,079 - PfGW456L13_67 0.19 -2.6
78,079 - PfGW456L13_67 0.19 -1.4
78,121 - PfGW456L13_67 0.22 -1.6
78,365 + PfGW456L13_67 0.41 -0.5
78,365 + PfGW456L13_67 0.41 -2.2
78,365 + PfGW456L13_67 0.41 -0.9
78,365 + PfGW456L13_67 0.41 -0.5
78,366 - PfGW456L13_67 0.41 -0.1
78,366 - PfGW456L13_67 0.41 -2.2
78,366 - PfGW456L13_67 0.41 -1.2
78,366 - PfGW456L13_67 0.41 -2.6
78,366 - PfGW456L13_67 0.41 -0.1
78,366 - PfGW456L13_67 0.41 -2.5
78,366 - PfGW456L13_67 0.41 +0.2
78,366 - PfGW456L13_67 0.41 -2.1
78,571 + PfGW456L13_67 0.57 -1.8

Or see this region's nucleotide sequence