Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4952

Experiment: L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4950 and PfGW456L13_4951 overlap by 4 nucleotidesPfGW456L13_4951 and PfGW456L13_4952 are separated by 223 nucleotidesPfGW456L13_4952 and PfGW456L13_4953 are separated by 214 nucleotides PfGW456L13_4950 - Iron siderophore sensor protein, at 5,529,525 to 5,530,514 _4950 PfGW456L13_4951 - FIG006045: Sigma factor, ECF subfamily, at 5,530,511 to 5,531,089 _4951 PfGW456L13_4952 - ribosomal subunit interface protein, putative, at 5,531,313 to 5,531,720 _4952 PfGW456L13_4953 - Glycine cleavage system transcriptional activator, at 5,531,935 to 5,532,882 _4953 Position (kb) 5531 5532Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5530.366 kb on + strand, within PfGW456L13_4950at 5530.367 kb on - strand, within PfGW456L13_4950at 5530.367 kb on - strand, within PfGW456L13_4950at 5530.367 kb on - strand, within PfGW456L13_4950at 5530.367 kb on - strand, within PfGW456L13_4950at 5530.585 kb on + strand, within PfGW456L13_4951at 5530.585 kb on + strand, within PfGW456L13_4951at 5530.585 kb on + strand, within PfGW456L13_4951at 5530.585 kb on + strand, within PfGW456L13_4951at 5530.585 kb on + strand, within PfGW456L13_4951at 5530.585 kb on + strand, within PfGW456L13_4951at 5530.586 kb on - strand, within PfGW456L13_4951at 5530.586 kb on - strand, within PfGW456L13_4951at 5530.638 kb on + strand, within PfGW456L13_4951at 5530.638 kb on + strand, within PfGW456L13_4951at 5530.638 kb on + strand, within PfGW456L13_4951at 5530.638 kb on + strand, within PfGW456L13_4951at 5530.639 kb on - strand, within PfGW456L13_4951at 5530.866 kb on + strand, within PfGW456L13_4951at 5530.866 kb on + strand, within PfGW456L13_4951at 5530.866 kb on + strand, within PfGW456L13_4951at 5530.866 kb on + strand, within PfGW456L13_4951at 5530.866 kb on + strand, within PfGW456L13_4951at 5530.867 kb on - strand, within PfGW456L13_4951at 5530.867 kb on - strand, within PfGW456L13_4951at 5530.867 kb on - strand, within PfGW456L13_4951at 5530.867 kb on - strand, within PfGW456L13_4951at 5530.867 kb on - strand, within PfGW456L13_4951at 5531.054 kb on - strandat 5531.158 kb on - strandat 5531.196 kb on + strandat 5531.196 kb on + strandat 5531.197 kb on - strandat 5531.197 kb on - strandat 5531.321 kb on + strandat 5531.322 kb on - strandat 5531.419 kb on - strand, within PfGW456L13_4952at 5531.432 kb on + strand, within PfGW456L13_4952at 5531.432 kb on + strand, within PfGW456L13_4952at 5531.432 kb on + strand, within PfGW456L13_4952at 5531.432 kb on + strand, within PfGW456L13_4952at 5531.432 kb on + strand, within PfGW456L13_4952at 5531.432 kb on + strand, within PfGW456L13_4952at 5531.432 kb on + strand, within PfGW456L13_4952at 5531.433 kb on - strand, within PfGW456L13_4952at 5531.433 kb on - strand, within PfGW456L13_4952at 5531.433 kb on - strand, within PfGW456L13_4952at 5531.433 kb on - strand, within PfGW456L13_4952at 5531.433 kb on - strand, within PfGW456L13_4952at 5531.433 kb on - strand, within PfGW456L13_4952at 5531.433 kb on - strand, within PfGW456L13_4952at 5531.433 kb on - strand, within PfGW456L13_4952at 5531.433 kb on - strand, within PfGW456L13_4952at 5531.433 kb on - strand, within PfGW456L13_4952at 5531.433 kb on - strand, within PfGW456L13_4952at 5531.433 kb on - strand, within PfGW456L13_4952at 5531.433 kb on - strand, within PfGW456L13_4952at 5531.433 kb on - strand, within PfGW456L13_4952at 5531.499 kb on - strand, within PfGW456L13_4952at 5531.654 kb on + strand, within PfGW456L13_4952at 5531.654 kb on + strand, within PfGW456L13_4952at 5531.654 kb on + strand, within PfGW456L13_4952at 5531.654 kb on + strand, within PfGW456L13_4952at 5531.654 kb on + strand, within PfGW456L13_4952at 5531.654 kb on + strand, within PfGW456L13_4952at 5531.655 kb on - strand, within PfGW456L13_4952at 5531.655 kb on - strand, within PfGW456L13_4952at 5531.655 kb on - strand, within PfGW456L13_4952at 5531.655 kb on - strand, within PfGW456L13_4952at 5531.655 kb on - strand, within PfGW456L13_4952at 5531.658 kb on + strand, within PfGW456L13_4952at 5531.690 kb on + strandat 5531.690 kb on + strandat 5531.690 kb on + strandat 5531.691 kb on - strandat 5531.691 kb on - strandat 5531.691 kb on - strandat 5531.720 kb on + strandat 5531.720 kb on + strandat 5531.720 kb on + strandat 5531.720 kb on + strandat 5531.720 kb on + strandat 5531.721 kb on - strandat 5531.721 kb on - strandat 5531.721 kb on - strandat 5531.721 kb on - strandat 5531.721 kb on - strandat 5531.721 kb on - strandat 5531.721 kb on - strandat 5531.732 kb on + strandat 5531.732 kb on + strandat 5531.733 kb on - strandat 5531.742 kb on - strandat 5531.764 kb on + strandat 5531.764 kb on + strandat 5531.795 kb on + strandat 5531.795 kb on + strandat 5531.795 kb on + strandat 5531.795 kb on + strandat 5531.795 kb on + strandat 5531.796 kb on - strandat 5531.796 kb on - strandat 5531.796 kb on - strandat 5531.796 kb on - strandat 5531.796 kb on - strandat 5531.799 kb on + strandat 5531.799 kb on + strandat 5531.799 kb on + strandat 5531.799 kb on + strandat 5531.800 kb on - strandat 5531.800 kb on - strandat 5531.814 kb on + strandat 5531.815 kb on - strandat 5531.815 kb on - strandat 5531.815 kb on - strandat 5531.880 kb on + strandat 5531.921 kb on + strandat 5531.921 kb on + strandat 5531.922 kb on - strandat 5531.922 kb on - strandat 5531.922 kb on - strandat 5531.925 kb on + strandat 5531.926 kb on - strandat 5531.926 kb on - strandat 5531.926 kb on - strandat 5531.926 kb on - strandat 5531.928 kb on + strandat 5531.929 kb on - strandat 5531.929 kb on - strandat 5531.929 kb on - strandat 5531.929 kb on - strandat 5532.044 kb on + strand, within PfGW456L13_4953at 5532.044 kb on + strand, within PfGW456L13_4953at 5532.056 kb on + strand, within PfGW456L13_4953at 5532.056 kb on + strand, within PfGW456L13_4953at 5532.057 kb on - strand, within PfGW456L13_4953at 5532.057 kb on - strand, within PfGW456L13_4953at 5532.201 kb on + strand, within PfGW456L13_4953at 5532.201 kb on + strand, within PfGW456L13_4953at 5532.202 kb on - strand, within PfGW456L13_4953at 5532.248 kb on + strand, within PfGW456L13_4953at 5532.272 kb on + strand, within PfGW456L13_4953at 5532.272 kb on + strand, within PfGW456L13_4953at 5532.273 kb on - strand, within PfGW456L13_4953at 5532.273 kb on - strand, within PfGW456L13_4953at 5532.422 kb on + strand, within PfGW456L13_4953at 5532.423 kb on - strand, within PfGW456L13_4953at 5532.664 kb on - strand, within PfGW456L13_4953

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (N)
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5,530,366 + PfGW456L13_4950 0.85 +0.9
5,530,367 - PfGW456L13_4950 0.85 -0.5
5,530,367 - PfGW456L13_4950 0.85 +0.7
5,530,367 - PfGW456L13_4950 0.85 +0.8
5,530,367 - PfGW456L13_4950 0.85 +2.8
5,530,585 + PfGW456L13_4951 0.13 -0.0
5,530,585 + PfGW456L13_4951 0.13 +0.6
5,530,585 + PfGW456L13_4951 0.13 -0.3
5,530,585 + PfGW456L13_4951 0.13 +0.5
5,530,585 + PfGW456L13_4951 0.13 -0.9
5,530,585 + PfGW456L13_4951 0.13 -0.4
5,530,586 - PfGW456L13_4951 0.13 +0.1
5,530,586 - PfGW456L13_4951 0.13 -1.5
5,530,638 + PfGW456L13_4951 0.22 -0.1
5,530,638 + PfGW456L13_4951 0.22 +0.4
5,530,638 + PfGW456L13_4951 0.22 -0.5
5,530,638 + PfGW456L13_4951 0.22 -0.1
5,530,639 - PfGW456L13_4951 0.22 +0.4
5,530,866 + PfGW456L13_4951 0.61 -0.2
5,530,866 + PfGW456L13_4951 0.61 +0.5
5,530,866 + PfGW456L13_4951 0.61 -1.6
5,530,866 + PfGW456L13_4951 0.61 +1.1
5,530,866 + PfGW456L13_4951 0.61 -0.2
5,530,867 - PfGW456L13_4951 0.61 -0.7
5,530,867 - PfGW456L13_4951 0.61 +0.5
5,530,867 - PfGW456L13_4951 0.61 +0.6
5,530,867 - PfGW456L13_4951 0.61 +0.3
5,530,867 - PfGW456L13_4951 0.61 +0.9
5,531,054 - -0.7
5,531,158 - -1.2
5,531,196 + -0.2
5,531,196 + -0.1
5,531,197 - +0.3
5,531,197 - +0.5
5,531,321 + +0.6
5,531,322 - -0.3
5,531,419 - PfGW456L13_4952 0.26 +0.8
5,531,432 + PfGW456L13_4952 0.29 -0.7
5,531,432 + PfGW456L13_4952 0.29 +0.2
5,531,432 + PfGW456L13_4952 0.29 +2.0
5,531,432 + PfGW456L13_4952 0.29 -0.4
5,531,432 + PfGW456L13_4952 0.29 +1.3
5,531,432 + PfGW456L13_4952 0.29 -0.4
5,531,432 + PfGW456L13_4952 0.29 -0.2
5,531,433 - PfGW456L13_4952 0.29 -1.3
5,531,433 - PfGW456L13_4952 0.29 -0.4
5,531,433 - PfGW456L13_4952 0.29 +0.4
5,531,433 - PfGW456L13_4952 0.29 -1.0
5,531,433 - PfGW456L13_4952 0.29 -0.1
5,531,433 - PfGW456L13_4952 0.29 -0.0
5,531,433 - PfGW456L13_4952 0.29 -0.7
5,531,433 - PfGW456L13_4952 0.29 -1.3
5,531,433 - PfGW456L13_4952 0.29 -0.1
5,531,433 - PfGW456L13_4952 0.29 -0.2
5,531,433 - PfGW456L13_4952 0.29 -0.3
5,531,433 - PfGW456L13_4952 0.29 -0.8
5,531,433 - PfGW456L13_4952 0.29 +0.6
5,531,433 - PfGW456L13_4952 0.29 +0.1
5,531,499 - PfGW456L13_4952 0.46 +0.1
5,531,654 + PfGW456L13_4952 0.84 -0.6
5,531,654 + PfGW456L13_4952 0.84 +0.1
5,531,654 + PfGW456L13_4952 0.84 -0.8
5,531,654 + PfGW456L13_4952 0.84 +0.9
5,531,654 + PfGW456L13_4952 0.84 +1.3
5,531,654 + PfGW456L13_4952 0.84 +0.9
5,531,655 - PfGW456L13_4952 0.84 +1.6
5,531,655 - PfGW456L13_4952 0.84 +0.9
5,531,655 - PfGW456L13_4952 0.84 +0.3
5,531,655 - PfGW456L13_4952 0.84 -1.0
5,531,655 - PfGW456L13_4952 0.84 +0.5
5,531,658 + PfGW456L13_4952 0.85 +0.1
5,531,690 + -1.4
5,531,690 + -0.9
5,531,690 + -0.2
5,531,691 - +0.9
5,531,691 - -0.4
5,531,691 - +0.8
5,531,720 + -0.0
5,531,720 + -0.6
5,531,720 + -0.5
5,531,720 + -0.3
5,531,720 + -0.4
5,531,721 - -0.4
5,531,721 - +0.1
5,531,721 - +0.3
5,531,721 - +0.1
5,531,721 - -1.9
5,531,721 - -1.0
5,531,721 - +0.9
5,531,732 + +0.3
5,531,732 + -1.3
5,531,733 - +0.5
5,531,742 - -0.6
5,531,764 + -0.2
5,531,764 + +0.4
5,531,795 + -0.2
5,531,795 + +1.4
5,531,795 + -0.4
5,531,795 + -1.5
5,531,795 + +0.3
5,531,796 - -0.2
5,531,796 - +0.3
5,531,796 - -0.7
5,531,796 - -0.7
5,531,796 - -0.4
5,531,799 + +0.8
5,531,799 + -0.8
5,531,799 + +0.5
5,531,799 + -0.5
5,531,800 - +0.9
5,531,800 - +0.4
5,531,814 + +0.2
5,531,815 - +0.5
5,531,815 - -0.1
5,531,815 - +0.1
5,531,880 + -0.4
5,531,921 + -0.3
5,531,921 + +0.1
5,531,922 - +0.4
5,531,922 - +0.9
5,531,922 - -1.3
5,531,925 + -1.7
5,531,926 - -0.6
5,531,926 - -0.2
5,531,926 - -0.4
5,531,926 - -0.3
5,531,928 + -0.1
5,531,929 - +0.4
5,531,929 - +0.3
5,531,929 - -1.4
5,531,929 - +0.6
5,532,044 + PfGW456L13_4953 0.11 -1.4
5,532,044 + PfGW456L13_4953 0.11 -0.4
5,532,056 + PfGW456L13_4953 0.13 -0.1
5,532,056 + PfGW456L13_4953 0.13 -0.1
5,532,057 - PfGW456L13_4953 0.13 +0.4
5,532,057 - PfGW456L13_4953 0.13 -0.7
5,532,201 + PfGW456L13_4953 0.28 +0.1
5,532,201 + PfGW456L13_4953 0.28 +0.6
5,532,202 - PfGW456L13_4953 0.28 -0.0
5,532,248 + PfGW456L13_4953 0.33 -1.0
5,532,272 + PfGW456L13_4953 0.36 -0.9
5,532,272 + PfGW456L13_4953 0.36 +0.3
5,532,273 - PfGW456L13_4953 0.36 -0.8
5,532,273 - PfGW456L13_4953 0.36 +0.8
5,532,422 + PfGW456L13_4953 0.51 +1.0
5,532,423 - PfGW456L13_4953 0.51 +0.2
5,532,664 - PfGW456L13_4953 0.77 -0.4

Or see this region's nucleotide sequence