Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_284

Experiment: L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_283 and PfGW456L13_284 are separated by 183 nucleotidesPfGW456L13_284 and PfGW456L13_285 are separated by 35 nucleotidesPfGW456L13_285 and PfGW456L13_286 are separated by 289 nucleotides PfGW456L13_283 - NADP-dependent malic enzyme (EC 1.1.1.40), at 332,332 to 333,600 _283 PfGW456L13_284 - Thermonuclease family protein, at 333,784 to 334,572 _284 PfGW456L13_285 - LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent, at 334,608 to 334,826 _285 PfGW456L13_286 - Helicase PriA essential for oriC/DnaA-independent DNA replication, at 335,116 to 337,335 _286 Position (kb) 333 334 335Strain fitness (log2 ratio) -2 -1 0 1at 332.900 kb on + strand, within PfGW456L13_283at 332.900 kb on + strand, within PfGW456L13_283at 332.901 kb on - strand, within PfGW456L13_283at 332.901 kb on - strand, within PfGW456L13_283at 332.901 kb on - strand, within PfGW456L13_283at 332.901 kb on - strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.954 kb on + strand, within PfGW456L13_283at 332.955 kb on - strand, within PfGW456L13_283at 332.955 kb on - strand, within PfGW456L13_283at 332.955 kb on - strand, within PfGW456L13_283at 332.955 kb on - strand, within PfGW456L13_283at 332.955 kb on - strand, within PfGW456L13_283at 332.955 kb on - strand, within PfGW456L13_283at 332.984 kb on - strand, within PfGW456L13_283at 332.984 kb on - strand, within PfGW456L13_283at 333.138 kb on + strand, within PfGW456L13_283at 333.317 kb on - strand, within PfGW456L13_283at 333.425 kb on + strand, within PfGW456L13_283at 333.425 kb on + strand, within PfGW456L13_283at 333.426 kb on - strand, within PfGW456L13_283at 333.426 kb on - strand, within PfGW456L13_283at 333.426 kb on - strand, within PfGW456L13_283at 333.426 kb on - strand, within PfGW456L13_283at 333.426 kb on - strand, within PfGW456L13_283at 333.431 kb on + strand, within PfGW456L13_283at 333.570 kb on - strandat 333.619 kb on - strandat 333.741 kb on + strandat 333.931 kb on - strand, within PfGW456L13_284at 333.968 kb on - strand, within PfGW456L13_284at 333.968 kb on - strand, within PfGW456L13_284at 333.982 kb on + strand, within PfGW456L13_284at 333.983 kb on - strand, within PfGW456L13_284at 334.079 kb on - strand, within PfGW456L13_284at 334.235 kb on + strand, within PfGW456L13_284at 334.236 kb on - strand, within PfGW456L13_284at 334.236 kb on - strand, within PfGW456L13_284at 334.236 kb on - strand, within PfGW456L13_284at 334.236 kb on - strand, within PfGW456L13_284at 334.534 kb on - strandat 334.534 kb on - strandat 334.657 kb on - strand, within PfGW456L13_285at 334.950 kb on + strandat 334.950 kb on + strandat 334.950 kb on + strandat 334.951 kb on - strandat 334.951 kb on - strandat 334.951 kb on - strandat 335.020 kb on + strandat 335.020 kb on + strandat 335.020 kb on + strandat 335.021 kb on - strandat 335.021 kb on - strandat 335.021 kb on - strandat 335.090 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (N)
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332,900 + PfGW456L13_283 0.45 -0.5
332,900 + PfGW456L13_283 0.45 +0.4
332,901 - PfGW456L13_283 0.45 -1.4
332,901 - PfGW456L13_283 0.45 +0.1
332,901 - PfGW456L13_283 0.45 -0.2
332,901 - PfGW456L13_283 0.45 -1.9
332,954 + PfGW456L13_283 0.49 +0.1
332,954 + PfGW456L13_283 0.49 -1.4
332,954 + PfGW456L13_283 0.49 -0.8
332,954 + PfGW456L13_283 0.49 -1.2
332,954 + PfGW456L13_283 0.49 -0.0
332,954 + PfGW456L13_283 0.49 +0.3
332,954 + PfGW456L13_283 0.49 +0.3
332,954 + PfGW456L13_283 0.49 -0.4
332,954 + PfGW456L13_283 0.49 +0.1
332,954 + PfGW456L13_283 0.49 -0.8
332,954 + PfGW456L13_283 0.49 +1.4
332,955 - PfGW456L13_283 0.49 +0.1
332,955 - PfGW456L13_283 0.49 -1.0
332,955 - PfGW456L13_283 0.49 -0.7
332,955 - PfGW456L13_283 0.49 -0.9
332,955 - PfGW456L13_283 0.49 +1.5
332,955 - PfGW456L13_283 0.49 +0.4
332,984 - PfGW456L13_283 0.51 -2.1
332,984 - PfGW456L13_283 0.51 +1.2
333,138 + PfGW456L13_283 0.64 -0.9
333,317 - PfGW456L13_283 0.78 -0.0
333,425 + PfGW456L13_283 0.86 -0.7
333,425 + PfGW456L13_283 0.86 -0.6
333,426 - PfGW456L13_283 0.86 +1.1
333,426 - PfGW456L13_283 0.86 +1.0
333,426 - PfGW456L13_283 0.86 -1.0
333,426 - PfGW456L13_283 0.86 +0.4
333,426 - PfGW456L13_283 0.86 -0.5
333,431 + PfGW456L13_283 0.87 -1.0
333,570 - -0.2
333,619 - -0.0
333,741 + +0.1
333,931 - PfGW456L13_284 0.19 +1.1
333,968 - PfGW456L13_284 0.23 -0.7
333,968 - PfGW456L13_284 0.23 +0.6
333,982 + PfGW456L13_284 0.25 +0.5
333,983 - PfGW456L13_284 0.25 +0.8
334,079 - PfGW456L13_284 0.37 -1.3
334,235 + PfGW456L13_284 0.57 +0.1
334,236 - PfGW456L13_284 0.57 +1.6
334,236 - PfGW456L13_284 0.57 -0.3
334,236 - PfGW456L13_284 0.57 -0.1
334,236 - PfGW456L13_284 0.57 +0.2
334,534 - +0.4
334,534 - -0.7
334,657 - PfGW456L13_285 0.22 -1.3
334,950 + -1.0
334,950 + -0.0
334,950 + +0.5
334,951 - +1.1
334,951 - -0.3
334,951 - +0.6
335,020 + -1.0
335,020 + -0.0
335,020 + -1.2
335,021 - +0.1
335,021 - -0.2
335,021 - -0.7
335,090 - +1.1

Or see this region's nucleotide sequence